Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3360835	3361169	335	41 [30]	[16] 32	gltD/gltF	glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein

AGACTGTGTCTGGCGAATCAAATTACTGACGAAGTGCGCGTTGTTTTCTGGCAAATGCGGCATGAGCGTTTGACCTTTCCTATAATAGGGATAATTTTCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATAC  >  NC_000913/3360639‑3360897                                                                                                                                                                                                    |                                                                aGACTGTGTCTGGCGAATCAAATTACTGACGAAGTGCGCGTTGTTTTCTGGCAAATGCGGCATGAGCGTTTGACCTTTCCTATAATAGGGATAATTTTCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATAc                                                             <  2:170275/200‑1 (MQ=255)                       ttACTGACGAAGTGCGCGTTGTTTTCTGGCAAATGCGGCATGAGCGTTTGACCTTTCCTATAATAGGGATAATTTTCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTc                                       <  2:541833/200‑1 (MQ=255)                            gACGAAGTGCGCGTTGTTTTCTGGCAAATGCGGCATGAGCGTTTGACCTTTCCTATAATAGGGATAATTTTCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTc                                  <  2:5711/200‑1 (MQ=255)                                                        tGCGGCATGAGCGTTTGACCTTTCCTATAATAAGGATAATTTTCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAat      <  2:311673/200‑1 (MQ=255)                                                                          ccTTTCCTATAATAGGGATAATTTTCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCt                                               <  1:14515/141‑1 (MQ=255)                                                                                  ataataGGGATAATTTTCAATAAATTTTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACTATACCGATTCTGCAAGCTATTCAGTCTTTTCATTc                              <  4:528050/150‑1 (MQ=255)                                                                                         ggATAATTTTCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 <  2:188910/108‑1 (MQ=255)                                                                                         ggATAATTTTCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 >  4:188898/1‑108 (MQ=255)                                                                                                  tCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 <  2:98999/99‑1 (MQ=255)                                                                                                  tCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 >  4:98991/1‑99 (MQ=255)                                                                                                       aaaTTGTGCTTTGTTCAACAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 <  4:543985/94‑1 (MQ=255)                                                                                                           tgtgCTGTGTTCATCAAGTCTGATGAGTGAAGCACATCAAGCCATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAata     <  4:540949/150‑1 (MQ=255)                                                                                                                   gTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAata     >  4:286150/1‑142 (MQ=255)                                                                                                                   gTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAata     <  2:286177/142‑1 (MQ=255)                                                                                                                     tCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAatat    <  1:235448/141‑1 (MQ=255)                                                                                                                       aCCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGata           <  3:276771/132‑1 (MQ=255)                                                                                                                       aCCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATAc  <  1:327089/141‑1 (MQ=255)                                                                                                                           aGTCTGATGAGTTAAGCACATCAATCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGGCAATACCGATTCTGCAAGCTATTCAATCTTTTCCTTCCATGTAGAt                     <  4:197765/118‑1 (MQ=255)                                                                                                                           aGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 >  3:378769/1‑74 (MQ=255)                                                                                                                           aGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 >  4:704440/1‑74 (MQ=255)                                                                                                                           aGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 <  2:704517/74‑1 (MQ=255)                                                                                                                           aGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 <  1:378789/74‑1 (MQ=255)                                                                                                                           aGTCTGATGAGTGAAGCACATCAAGCAATTCCTCATATACAATTCGTATCAATTACTTGTTAACACCTCTGACAAAACCGATTCTGCAAGCTATTCCGTCTTTTCATTCCATGTATAt                     >  2:197777/1‑118 (MQ=255)                                                                                                                                gatgaGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAg                                         >  2:100173/1‑93 (MQ=255)                                                                                                                                gatgaGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAg                                         <  4:100165/93‑1 (MQ=255)                                                                                                                                   gaGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGt                                        >  1:122285/1‑91 (MQ=255)                                                                                                                                   gaGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGt                                        <  3:122275/91‑1 (MQ=255)                                                                                                                                                              tttACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 >  3:353751/1‑39 (MQ=255)                                                                                                                                                              tttACAATCCGTCTCAATTACTTGTTAACACCTCTGACa                                                                 <  1:353771/39‑1 (MQ=255)                                                                                                                                                              tttACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATAcc                                                            >  3:281686/1‑44 (MQ=255)                                                                                                                                                              tttACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATAcc                                                            <  1:281702/44‑1 (MQ=255)                                                                                                                                                              tttACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTc                                       <  3:210063/65‑1 (MQ=255)                                                                                                                                                              tttACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTc                                       >  1:210078/1‑65 (MQ=255)                                                                                                                                                                            cAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCt                                      <  4:426118/52‑1 (MQ=255)                                                                                                                                                                            cAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCt                                      >  2:426171/1‑52 (MQ=255)                                                                                                                                                                            cAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATAc  <  2:184696/88‑1 (MQ=255)                                                                                                                                                                            cAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATAc  >  4:184684/1‑88 (MQ=255)                                                                                                                                                                                     gTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGata           <  4:135702/70‑1 (MQ=255)                                                                                                                                                                                     gTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGata           >  2:135713/1‑70 (MQ=255)                                                                                                                                                                                            ccTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAatat    <  3:417328/70‑1 (MQ=255)                                                                                                                                                                                            ccTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAatat    >  1:417348/1‑70 (MQ=255)                                                                                                                                                                                                    |                                                                AGACTGTGTCTGGCGAATCAAATTACTGACGAAGTGCGCGTTGTTTTCTGGCAAATGCGGCATGAGCGTTTGACCTTTCCTATAATAGGGATAATTTTCAATAAATTGTGCTTTGTTCACCAAGTCTGATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATAC  >  NC_000913/3360639‑3360897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.