mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 380,013 | 0 | G→. | 12.8% | 15.7 0.0 ‑0.1 | 47 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| * | NC_000913 | 4,260,442 | 0 | T→C | 100.0% | 3.0 | 1 | L41S (TTA→TCA) | yjbL | uncharacterized protein |
| * | NC_000913 | 4,498,309 | 0 | G→T | 100.0% | 1.3 | 1 | R13L (CGT→CTT) | insC1 | IS2 repressor TnpA |
| * | NC_000913 | 720,968 | 0 | G→A | 100.0% | 0.7 | 1 | intergenic (+128/+88) | ybfK/kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| * | NC_000913 | 2,102,757 | 0 | A→T | 100.0% | 0.7 | 1 | V52D (GTC→GAC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 156,272 | 0 | C→A | 100.0% | 0.6 | 1 | intergenic (‑71/+27) | yadV/yadN | putative periplasmic pilin chaperone/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 4,507,822 | 0 | T→A | 100.0% | 0.1 | 1 | K266* (AAA→TAA) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,896 | 0 | C→A | 100.0% | 0.1 | 1 | G241V (GGT→GTT) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,921 | 0 | G→A | 100.0% | 0.1 | 1 | H233Y (CAT→TAT) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,809 | 0 | G→A | 100.0% | ‑0.0 | 1 | S270L (TCA→TTA) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,828 | 0 | T→G | 100.0% | ‑0.0 | 1 | R264R (AGG→CGG) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,829 | 0 | G→T | 100.0% | 0.0 | 1 | L263L (CTC→CTA) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,834 | 0 | T→A | 100.0% | ‑0.0 | 1 | R262* (AGA→TGA) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,836 | 0 | A→G | 100.0% | ‑0.0 | 1 | L261P (CTT→CCT) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,837 | 0 | G→C | 100.0% | 0.0 | 1 | L261V (CTT→GTT) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,854 | 0 | G→A | 100.0% | ‑0.0 | 1 | S255L (TCA→TTA) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,855 | 0 | A→G | 100.0% | ‑0.0 | 1 | S255P (TCA→CCA) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,861 | 0 | G→A | 100.0% | ‑0.0 | 1 | R253* (CGA→TGA) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,872 | 0 | G→A | 100.0% | ‑0.0 | 1 | T249I (ACA→ATA) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,826 | 0 | C→G | 100.0% | ‑0.1 | 1 | R264S (AGG→AGC) | insI1 | IS30 transposase |
| Marginal mixed read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C→T | 24.5% | 94.7 ‑2.1 ‑0.6 | 147 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1979486 = | 2 (0.020) | 45 (0.560) | 19/298 | 3.5 | 95.7% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 14 (0.180) | 14/282 | 4.5 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 15 (0.190) | 13/290 | 4.9 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 761823 = | 76 (0.950) | 3 (0.040) | 3/276 | 9.0 | 4.0% | coding (302/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 761890 = | 75 (1.010) | coding (369/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | 3856874 = | 90 (1.120) | 3 (0.040) | 3/276 | 9.0 | 3.5% | intergenic (+10/+37) | yidI/yidJ | inner membrane protein/sulfatase/phosphatase superfamily protein |
| ? | NC_000913 | 3856909 = | 83 (1.110) | intergenic (+45/+2) | yidI/yidJ | inner membrane protein/sulfatase/phosphatase superfamily protein | |||||
| * | ? | NC_000913 | = 4612024 | 93 (1.160) | 3 (0.040) | 3/282 | 9.1 | 3.2% | intergenic (+23/‑104) | osmY/ytjA | salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein |
| ? | NC_000913 | = 4612030 | 91 (1.200) | intergenic (+29/‑98) | osmY/ytjA | salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein | |||||