Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_000913	1,634,465	0	T→A	100.0%	‑0.5	1	S141C (AGT→TGT)	tfaQ	Qin prophage; putative tail fibre assembly protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/0):  ref base (1/0):  total (1/0)

GCTCACTGGCTACCTGCATCAGGTTGTTTTTTGTTTCTTCCGCCTCCCGGATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACC  >  NC_000913/1634459‑1634590       |                                                                                                                              ccTCACTGTCCACCTTCATCAGGTTGTTCTTTCTTTCTTCCGCCACCCGGATCCGGAACAGTCTTTCTGCTTCCGTATCCTTCACCTAGCCTCTCCCGTCCCCCCCCTCATTCCCCCCTTCCgcccaccacc  >  3:425322/2‑123 (MQ=0)       |                                                                                                                              GCTCACTGGCTACCTGCATCAGGTTGTTTTTTGTTTCTTCCGCCTCCCGGATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACC  >  NC_000913/1634459‑1634590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.