| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,619,150 | T→C | intergenic (+161/‑42) | nikR → / → rhsB | transcriptional repressor, Ni‑binding/Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 3,619,150 | 0 | T→C | 100.0% | 223.5 | 59 | intergenic (+161/‑42) | nikR/rhsB | transcriptional repressor, Ni‑binding/Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Reads supporting (aligned to +/- strand): new base (28/31): ref base (0/0): total (28/31) | ||||||||||
CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCT > NC_000913/3618960‑3619297 | cATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATa > 1:789933/1‑200 (MQ=255) aTTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATAc < 1:170144/200‑1 (MQ=255) gCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTc < 1:393884/200‑1 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCa < 1:535208/200‑1 (MQ=255) tGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAaat < 1:18991/200‑1 (MQ=255) tattatTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGa < 1:1673/200‑1 (MQ=255) attattGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGAt > 1:322515/1‑200 (MQ=255) cTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGACCCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAAc < 1:565445/200‑1 (MQ=255) tGAACGATTGACAAATGTGCACTATCACACCTGCGTCCTCTCTGAATACCCTCTCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAGATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATAc < 2:520570/150‑1 (MQ=255) aaCGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTg < 2:264976/150‑1 (MQ=255) ccACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATAc < 3:581387/132‑1 (MQ=255) cTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAaat < 4:12866/141‑1 (MQ=255) cTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGaaaa > 2:20543/1‑150 (MQ=255) ccTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCTTTAAAATAATAGAAAATGAtcttg > 2:8750/1‑149 (MQ=255) ccTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGaaa > 4:150428/1‑141 (MQ=255) tctctAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGaac > 3:410586/1‑131 (MQ=255) tctctAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTa > 4:28180/1‑141 (MQ=255) ctAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGAt > 4:523860/1‑107 (MQ=255) ctAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGAt < 3:523830/107‑1 (MQ=255) ctAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGtt > 1:314565/1‑200 (MQ=255) cccTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTAc < 3:542801/132‑1 (MQ=255) aTCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGc > 1:277901/1‑200 (MQ=255) aaCCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGATGATACTGTCAATAAACTAATAGAAAAGGATTTTACGATGAGCgg > 3:466360/1‑132 (MQ=255) cTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGaaa < 3:127848/132‑1 (MQ=255) tctTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTAt < 1:98884/200‑1 (MQ=255) ctTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAaat < 1:21932/97‑1 (MQ=255) ctTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAaat > 2:21931/1‑97 (MQ=255) ctTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAg < 4:457877/102‑1 (MQ=255) ctTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAg > 3:457856/1‑102 (MQ=255) ctTTTGTAACGTTCCAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACcgg > 3:486498/1‑132 (MQ=255) gTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTaaa < 2:31968/85‑1 (MQ=255) gTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTaaa > 1:31969/1‑85 (MQ=255) gTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAaat < 2:23661/87‑1 (MQ=255) gTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAaat > 1:23662/1‑87 (MQ=255) gTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACAt > 4:459877/1‑141 (MQ=255) gTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACAt > 4:377378/1‑141 (MQ=255) gTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGc > 2:382634/1‑146 (MQ=255) gTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGc < 1:382675/146‑1 (MQ=255) tCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATg > 2:9032/1‑150 (MQ=255) cTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCg > 1:46448/1‑200 (MQ=255) atatatTCCTAAAAATCTTCAATTCATTGTGACCACAAGCTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTCTTGGTGCCCCCACCGGCGt > 1:346111/1‑200 (MQ=255) atTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATAGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGcc < 1:8228/200‑1 (MQ=255) ttCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCt > 1:562816/1‑200 (MQ=255) tCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGt < 2:754654/150‑1 (MQ=255) cTTCAATTCATTGTGCCCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAAT‑ATAGAAAAGGATTTTACGCTGAGCGGAAAACCGGCGGAGCGTCAGGGTGAAATGACGCAGTATGGCGGATCCATTGTTCAGGGTTc > 2:519295/1‑150 (MQ=255) cTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTg < 4:432087/141‑1 (MQ=255) ttCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCgg < 3:64277/132‑1 (MQ=255) tCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGtt > 4:318785/1‑141 (MQ=255) aaTTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAaat < 4:103724/60‑1 (MQ=255) aaTTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAaat > 3:103720/1‑60 (MQ=255) aTTCATTGTGACCATAAGGTGTTCTGCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGc < 3:506990/132‑1 (MQ=37) aTTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCAtt < 3:175687/54‑1 (MQ=255) aTTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCAtt > 4:175693/1‑54 (MQ=255) gtgACCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTc < 3:377362/132‑1 (MQ=255) aCCACAAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTa < 2:279562/150‑1 (MQ=255) cacaAGTTTTTCTTCGCTTGTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGt < 3:617904/132‑1 (MQ=255) caAGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGTAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTGCAGGGTTCAGCCGGGGTACGTATTgg > 2:257285/1‑150 (MQ=255) aGTTTTTCTTCGCTTTTTCGCATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTg < 2:211876/150‑1 (MQ=255) tgtttCGCATGAAGATACTGTCAGGAAAATAATAGAAAAGGATTGTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTAt < 3:177161/130‑1 (MQ=255) | CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACACCTGATTCCTCTCTAAATACCCTATCCGAACCTTCTCTTTTGTAACGTTCTAAATATATTCCTAAAAATCTTCAATTCATTGTGACCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCT > NC_000913/3618960‑3619297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |