Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT53.4% 8.3 / 207.4 234intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (32/77);  new base T (46/79);  total (78/156)
Fisher's exact test for biased strand distribution p-value = 2.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.89e-02

Only 100 of 309 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑‑AAAA‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202369‑202621
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aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTGGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCC‑‑attaa‑‑‑aaat‑t‑aaaa                                                                                                                             >  1:3341020/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑ttaa‑‑‑aaat‑t‑aaaaa                                                                                                                            >  2:3466995/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAACAATCCCCtt‑‑‑a‑‑‑aaaa‑t‑aaaaa                                                                                                                            >  2:3812424/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAACAATCCCC‑‑Ttaa‑‑‑aaaa‑t‑aaaa                                                                                                                             >  2:2521526/1‑128 (MQ=255)
  taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATACAC‑‑ttaa‑‑‑aaat‑t‑aaaaa                                                                                                                            >  1:2606070/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATTTAGATCCACTTGATCTATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAACAAT‑‑ACAATAAA‑‑‑AAAA‑T‑aaaaaaaa                                                                                                                         >  2:1385024/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAA‑T‑aaaaaaaa‑a                                                                                                                       >  1:3035482/1‑128 (MQ=255)
      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAACATT‑‑‑A‑‑‑AAAA‑T‑aaaaaaaa‑aa                                                                                                                      >  2:1214077/1‑128 (MQ=255)
        ttttAAGGTTAATTAAAATAACATAAACTTTATAATTCT‑TAAAATGTTTATACTCTTTATCTATTTTTTTTTTTTTTTATATTCAAAAATAAAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAAT‑T‑aaaaaaaa‑aa                                                                                                                      <  2:3318288/126‑1 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAA‑T‑aaaaaaaa‑aaaaa                                                                                                                   >  2:3008238/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TAAAATGTATATCCTCGTGATCTAATTATTTATATAATAATCATCACAAAA‑AAAAAAAAAAACAAAACCaaaaaa‑‑‑aaaa‑a‑aaaaaaaa‑aaa                                                                                                                     >  2:504916/1‑128 (MQ=255)
           tAATGTTTAATAAAAAAACATAAAAATAATAATTATATAAAATTTATACCCTCGT‑TTATATTTTTTTATTTTTTTTTTTTAACAAAA‑AAAAAAAAAAAAACCCCC‑‑‑TAA‑‑‑AAAA‑T‑aaaaaaaa‑aaaaaaa                                                                                                                 <  2:1598071/128‑1 (MQ=255)
           tAAGGTTAATTAAAATAAAATAAACTTAATAATTAT‑TATAATATAGATCATCTTTATATAATTATTTATTTTTTTATCTTAACAAAT‑AAAAAAAAAACAAT‑‑AAAAATAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaa                                                                                                                  >  2:1076018/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaa                                                                                                                 >  2:3231204/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaa                                                                                                                >  2:3544626/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATAATATTGATCTATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaa                                                                                                                >  2:1478456/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAA‑‑‑AAAA‑T‑aaaaaaaa‑aaaaaaaaa                                                                                                               >  2:2976666/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaa                                                                                                               >  2:3861398/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTCTTTATCTTCACAAAT‑AAAAAAAAAACAA‑‑AACAATTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaa                                                                                                               >  2:2294659/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCT‑TATAATGTAGATACTCTTAATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAAAACAC‑‑ATAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                           >  1:3532206/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCT‑TATAAAGTAGATCCTCGTGATCTATTTATTAATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAT‑‑CCAAATAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                            >  2:3973356/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAAAACACCTAAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaaaa                                                                                                             >  2:3684639/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAA‑AAAATAAAATTAA‑‑‑AAAA‑T‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                           >  2:217971/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTAAAA‑‑‑ATAa‑a‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                            >  1:2037752/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATATTTTTATTTGATTATCTTCACAAAT‑AAAAAAAAAAAAATCCACAaaaaa‑‑‑aaaa‑a‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                            >  2:1861461/1‑128 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCC‑‑ATTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaaaaaaaa                                                                                                         >  2:888188/1‑126 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCA‑TATAATGTATATACTCTTTATCTATTATTTTATTAGTTTAAAATAAAAAAT‑AAAAAAAAAACAAACAC‑‑‑ATAA‑‑‑AAAA‑T‑aaaaaaaa‑aaaaaaaaaaaaaaaa                                                                                                        >  2:3109161/1‑125 (MQ=255)
                    ttaaAATACAATAAACTTAATAATTCT‑TATAATGTAGATACTAGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATACAAATAAAA‑‑‑ATaa‑a‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                           >  2:2737711/1‑128 (MQ=255)
                     taaAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCTTGATCTATTTTTTTAATTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAATAAC‑‑CTAA‑‑‑AAAA‑T‑aaaaaaaa‑aaaaaaaaaaaaaaaa                                                                                                        >  1:3792918/1‑125 (MQ=255)
                     taaAATACCATAAAATTAATAAATAT‑TATAATTTTTATCATCGTGTTTTTTTTTTTTATTTTTTTATCTTAACAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaaaactaaa                                                                                                        <  2:309209/128‑6 (MQ=255)
                       aaaTACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                      >  2:3660687/1‑123 (MQ=255)
                       aaaTACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACC‑‑ATTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                      >  1:483045/1‑123 (MQ=255)
                       aaaTACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAACTTCACAAAT‑AAAAAAAAAACAATCCCATT‑‑‑A‑‑‑AAAA‑T‑TAAAAAAA‑AAAAAAAAAAAAACAaaaa                                                                                                     >  2:3257135/1‑128 (MQ=255)
                        aaTATCATAAATTTAAAAATTAT‑AAAAATTTATATACTCGTGATATATTTTTTTATTTTATTATATTAAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaaactaaaaaca                                                                                                     <  1:3815383/128‑10 (MQ=255)
                        aaTACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAA‑‑‑AAAT‑T‑Aaaaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                     >  1:3296566/1‑128 (MQ=255)
                        aaTACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTAATTATTTAATTATTTATATTCACAAAT‑AAAAAAAAAACAA‑‑ACAAAATAA‑‑‑AAAT‑T‑Aaaaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                     >  1:429111/1‑128 (MQ=255)
                         aaaacaaaaaaTTAATAATTTT‑TAAAATTTATATACTTTTGTACATATTTTTTATTTTTTTAACTTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑AAAA‑T‑‑‑AAAAAA‑AAAAAAAAAAAAACTAAaaaca                                                                                                  <  2:2049109/121‑1 (MQ=255)
                         aTACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaaaaaaaaaataa                                                                                                    >  2:798888/1‑121 (MQ=255)
                          aaacATAAAATTAATAATTAT‑TAAAATATACATACTCCTTTACAATTTTTTTATTTGTTTAAATTCAAAAAT‑AAAAAAAAAACAATCCCCAT‑‑‑A‑‑‑AAAA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAaaaca                                                                                                  <  1:2494839/125‑1 (MQ=255)
                            ccATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAAT‑T‑aaaaaaaa‑aaaaaaaaaaaataaaaaaaaaa                                                                                                 >  1:3102395/1‑117 (MQ=255)
                            acaaaaaaTTAATAAATAT‑TATAATTTATATAATTTTTAAATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑A‑‑‑AAAA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAaaacaaa                                                                                                <  1:1355799/124‑1 (MQ=255)
                             cATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATTTTCACAAAT‑AAAAAAAAAACAATCCCCTTAAAA‑‑‑ATTA‑A‑AAAAaaaa‑aaaaaaacaaaaaaaaaaaaca                                                                                                  >  2:3361469/1‑128 (MQ=255)
                                aaaaTTAATAATTTT‑TATAATTTTTATACTAGTTATATTTTTTTTTATTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑A‑‑‑AAAA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAActct                                                                                            <  1:3201110/128‑1 (MQ=255)
                                 aaCTTAAATATTCT‑TATAATTTTGATCCTCCTTATATATTTTTTTTTTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:2796978/128‑1 (MQ=255)
                                  aattAATAATTAT‑TATAATTTATATCATCTTGATCTATTTTTTTATTTGTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:3482799/126‑1 (MQ=255)
                                   atttataatTTT‑TTTAATGTTTATCACTGGGATCTATTTTTTTTATTTTTTATATTCAAAAAT‑AAAAAAAAAAAAAATCCCCTTAAA‑‑‑AATT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAActct                                                                                            <  2:3630625/124‑1 (MQ=255)
                                   attAAAAATTTT‑TATAATTTATATACAATTTATTTATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑TTAAA‑‑‑AATT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:2984129/127‑1 (MQ=255)
                                    ttAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAA‑TAAaaacaaaaaatattt                                                                                        >  1:3167922/1‑120 (MQ=255)
                                      aataaataT‑TATAATGTATAACCTCGTTATATATTTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAA‑T‑‑‑‑TAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                                   <  1:3370337/128‑1 (MQ=255)
                                      aaaaaatCT‑TATAATTTATATACTAGTTATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑A‑‑‑AAAA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                                      <  1:840611/122‑1 (MQ=255)
                                                          tagatctttttCTATTTTTTTTTTTTTTTAATTTTAAAAAT‑AAAAAAAAAAAAAT‑AACATTAAA‑‑‑AATT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                     <  2:449123/118‑1 (MQ=255)
                                                            tatttttatattttttttttttttttTAT‑TTTAAAAAA‑AAAAAAAAAAAAAAACCCATAAAA‑‑‑AAAT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                   <  1:2287913/116‑1 (MQ=255)
                                                            aaaatttatatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  1:103008/118‑1 (MQ=255)
                                                              tctgtttttATTTTTTTTTTTTTTTATATAAAAAAAA‑AAAAAAAAAAAAAACCCC‑TAAAA‑‑‑AAAT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  2:3187591/120‑1 (MQ=255)
                                                              attttttatATTTTTTTTTTTTTTTATAAT‑AAAAAA‑AAAAAAAAAAAAATAAACTTAAAA‑‑‑AATA‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  1:604065/120‑1 (MQ=255)
                                                                 ttttttatttttttattttttTATATTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:543106/123‑1 (MQ=255)
                                                                 ttatcttattatttATTTTTTTATCTTAACAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAA‑‑‑AAAA‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:3503929/117‑1 (MQ=255)
                                                                 ggATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAA‑TAAAAAAAACCTATATTTATAAAAATTACCTATTAAACCAAatttt                                                            >  2:3041419/2‑128 (MQ=255)
                                                                  ttatttattttatATTT‑TTTATATATACAAAT‑AAAAAAAAAAAAATAAC‑‑ATTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                           <  2:1996424/121‑1 (MQ=255)
                                                                  tatatatttttttattttttTATATAAAAAAAT‑AAAAAAAAAACAATACCC‑ATAAA‑‑‑AATT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:2902958/124‑1 (MQ=255)
                                                                  gATTTATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAAACAC‑‑TTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                            <  1:876666/128‑1 (MQ=255)
                                                                  attatatttttttattt‑tttATAATTAAAAAA‑AAAAAAAAAAAAAAAACCATT‑‑A‑‑‑AAAA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                           <  1:1188682/124‑1 (MQ=255)
                                                                    atattttttttATTT‑TTAATAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                         <  1:1173529/124‑1 (MQ=255)
                                                                     atATTTTTTTATTTGTTTAATTAAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑A‑‑‑AAAA‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                        <  1:3147003/127‑1 (MQ=255)
                                                                       ttttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  2:403998/127‑1 (MQ=255)
                                                                        tttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  1:272589/128‑1 (MQ=255)
                                                                         ttttttttttttTAAAATTTAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAA‑‑‑AAAT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  1:1214077/128‑1 (MQ=255)
                                                                         ttttttATTTTTTTTTTTTAAAAAAA‑AAAAAAAAAAAAAAACCCTTTAAA‑‑‑ATTA‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  2:373654/128‑1 (MQ=255)
                                                                           ttttAATTTTTTATATTAACAAAT‑AAAAAAAAAAAAATCCCCAT‑‑‑A‑‑‑AAAA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                                  <  1:3063377/128‑1 (MQ=255)
                                                                                ttttttTATATTAAAAAAA‑AAAAAAAAAAAAATAACC‑TTAAA‑‑‑AATT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  1:1444508/128‑1 (MQ=255)
                                                                                  tttttATATTAAAAAAT‑AAAAAAAAAAAAATACC‑‑TTTAA‑‑‑AAAA‑T‑AAAAAAAATAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                             <  1:1882939/126‑1 (MQ=255)
                                                                                    ttttaattaaaaaaa‑aaaaaaaaaaaaATAACATTAAAA‑‑‑ATTA‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                            <  1:3562884/117‑1 (MQ=255)
                                                                                    tttATCTTCACAAATAAAAAAAAAAACAATCCC‑‑ATTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAA‑AAAAAACACAACAAATTTTTAAAAATACACAAAAAAAACACATTTAATTTTTAAAAAAAAatta                                          >  2:2590138/1‑126 (MQ=255)
                                                                                      tatatttaaaaaa‑aaaaaaaaaaaaATACCCTTAAAAATTAAAA‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                             <  1:3610189/119‑1 (MQ=255)
                                                                                      tATCTTCACAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑A‑‑‑AAAA‑T‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAAAAAACAAAATTAAATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAATTTTTGACa                                     >  2:3514996/1‑128 (MQ=255)
                                                                                         tatttaaaaT‑AAAAAAAAAAAAATACC‑‑GATAA‑‑‑AAAA‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  2:3608838/122‑1 (MQ=255)
                                                                                          attaaaaaa‑aaaaaaaaaaaaaaaaCCATAT‑A‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  1:222754/123‑1 (MQ=255)
                                                                                           taaaaaaa‑aaaaaaaaaaaaATCCC‑‑ATTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAAATAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                                   <  1:1511183/124‑1 (MQ=255)
                                                                                              aaaaa‑aaaaaaaaaaaaaaaaCCCATTAA‑‑‑AAAT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                                  <  1:3246526/127‑1 (MQ=255)
                                                                                                 aT‑AAAAAAAAAACAAT‑ACCATTAAA‑‑‑AATT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                              <  1:3559447/128‑1 (MQ=255)
                                                                                                            aaaaaaattacattaa‑‑‑aaat‑t‑aaaaaAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata                     <  1:1412104/116‑1 (MQ=255)
                                                                                                             aaaaaaaaaccataa‑‑‑aaat‑t‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatat                    <  1:2070784/116‑1 (MQ=255)
                                                                                                              aaaaaaaaatataa‑‑‑aata‑taaaaaaAAA‑AAAAAAAAAAAAAATTAAAACAAACTATATTTATTAAAATTCACTATTATACCACATTTTATTTTTAAAATAATATATTTACATAATATATATCTAatat                    <  1:1076018/117‑1 (MQ=255)
                                                                                                               acaataaccttaa‑‑‑aaat‑t‑aaaaaAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  1:1790938/119‑1 (MQ=255)
                                                                                                               aaaaaccacttaa‑‑‑aaat‑t‑aaaaaAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  1:3973429/119‑1 (MQ=255)
                                                                                                                 aaatcacatta‑‑‑aaaa‑t‑taaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  1:3268553/118‑1 (MQ=255)
                                                                                                                 aaaacccataa‑‑‑aaat‑t‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  1:3459007/120‑1 (MQ=255)
                                                                                                                  ataacctaaa‑‑‑aaat‑t‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatagtat               <  1:2148667/120‑5 (MQ=255)
                                                                                                                  ataacaataa‑‑‑aaaa‑t‑taaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata               <  1:3660687/121‑1 (MQ=255)
                                                                                                                  aaaccattAA‑‑‑AAATTT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  1:199088/122‑1 (MQ=255)
                                                                                                                   ttaaattta‑‑‑aaat‑t‑aaaaaaAA‑AAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  1:97805/120‑1 (MQ=255)
                                                                                                                   ataacttAA‑‑‑AAAT‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  1:3016598/123‑1 (MQ=255)
                                                                                                                   acaataaaa‑‑‑aata‑a‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  2:494671/121‑1 (MQ=255)
                                                                                                                   aacccttta‑‑‑aaat‑t‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  1:701634/120‑1 (MQ=255)
                                                                                                                   aaaaataaatttaaaa‑t‑taaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata                 <  2:973331/116‑1 (MQ=255)
                                                                                                                    acccatta‑‑‑aaaa‑a‑aaaaaaaa‑aaaaaaaaaaaaACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat             <  1:2510188/121‑1 (MQ=255)
                                                                                                                     cccatta‑‑‑aaaa‑t‑taaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataata            <  1:1656462/122‑1 (MQ=255)
                                                                                                                      caataa‑‑‑aaat‑t‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTAATTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:3283849/125‑1 (MQ=255)
                                                                                                                        aata‑‑‑aaaa‑t‑taaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta         <  1:2445837/125‑1 (MQ=255)
                                                                                                                                ata‑t‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTg    <  2:942218/126‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                  
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCT‑TATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑‑AAAA‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202369‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑