Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA42.6% 1005.1 / inf 1182intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (217/430);  new base A (425/55);  total (652/530)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1203 total aligned reads displayed.

AAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420128‑420380
                                                                                                                                     |                                                                                                                                  
 aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTa‑‑aaaaa                                                                                                                                 >  2:3918326/1‑128 (MQ=255)
 aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TATTATTAT‑C‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑Aaaaa                                                                                                                                 >  1:2872184/1‑128 (MQ=255)
  aaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTA‑‑aaaaaa                                                                                                                                >  1:3308284/1‑128 (MQ=255)
  aaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTATT‑‑TTaaaa                                                                                                                                >  1:3076040/1‑128 (MQ=255)
   aattatattatttttttAAAAATTTTTTATTTTTTATAAATTTATTATTTTTTAAATTTTTAAATTATTTTTAAATAATTATTTTTTTATTAA‑TTTTATTTT‑T‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACaaaaa                                                                                                                               <  2:2868284/117‑1 (MQ=255)
    atagaagtaattttttAAAAAATTTATATTTTTAAAAAATGAATTATTTTTAAAATTTTTAAAATATTTTAAAATAATTATATATTAATCAA‑TTTTATTCT‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACaaaaa                                                                                                                               <  1:807074/118‑1 (MQ=255)
       ctaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑‑‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAAaataa‑t                                                                                                                        >  1:1125350/1‑128 (MQ=255)
       attgCAATTTTTTAAAAAATTTTTAATTTTATTAAATTAATTATTTTTCAAAATGTTAAATTATTTTAAAATCATTATATATTAATAAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAAtata                                                                                                                           <  1:3620152/125‑1 (MQ=255)
        aaaaaatttttaAAAAAATTTTAAATT‑TTATAAAATCATTATTTTTAAAATTTTTAAATTTATTTTAAATAATTATATATTAATTAA‑ATTTATTCTCC‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATaa                                                                                                                          <  1:3214943/122‑1 (MQ=255)
           cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑Aaaaaaaataaaatt                                                                                                                       >  1:702996/1‑120 (MQ=255)
           cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTCCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAa‑ttt                                                                                                                      >  1:1751324/1‑128 (MQ=255)
            acatttttAAAAAATTTTTAATTTTAAAAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCAATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAa‑ttta                                                                                                                     <  1:3356497/125‑1 (MQ=255)
             cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑‑‑TTTTTTTTTTTTTTT‑‑AAAAAAATATAa‑ttttt‑tt                                                                                                                 >  2:3424236/1‑128 (MQ=255)
              ttttttAAAAAATTTTTATTTTTAATAAGTGAATTTTTTTTAAATTTGTTAAATTATTTTCAAATAATTATATATTAATCAT‑TTTTATGCT‑G‑G‑‑‑‑‑‑TTTTTTTTTTTTTT‑‑ACAATAATATAA‑TTTAT‑TTGa                                                                                                               <  1:2233960/128‑1 (MQ=255)
              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑T‑‑‑TTTTTTTTTTTTTTTTA‑‑ACAAAAATATAa‑tttat‑t                                                                                                                  >  2:1449923/1‑128 (MQ=255)
              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATTTAa‑tttat‑t                                                                                                                  >  2:1722953/1‑128 (MQ=255)
              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑‑TAAAAAAATAa‑tattt‑tt                                                                                                                 >  2:3349852/1‑128 (MQ=255)
              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATATAa‑tttat‑tt                                                                                                                 >  1:1405194/1‑128 (MQ=255)
              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATATAa‑tttat‑tt                                                                                                                 >  1:2684660/1‑128 (MQ=255)
              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATAATa‑ttttt‑tt                                                                                                                 >  2:270384/1‑128 (MQ=255)
               tttttAAAAAATTTTTAATTTTATTTAATTTATTTTTTTTAAATTTTTTTAATTATTTTTAAATTTTTTTTTATTTATAAA‑TTTTATTCT‑T‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAa‑tttat‑tt                                                                                                                 <  2:2371413/128‑1 (MQ=255)
               tttttAAAAAATTTTTAATTTTAATAACTTAATAATTTTTAAAATTTTTAAATTATTTTAAAATAATTATCTATTAATAAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAa‑tttat‑tt                                                                                                                 <  2:3864751/128‑1 (MQ=255)
                ttttAAAAAATTTTTAATTTTTATAAATTAATTATTTTTCAAATTGTTAAATTATTTTAAAATAATTATATATTAATAAA‑TTTTATTCT‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAa‑tttat‑tt                                                                                                                 <  1:456940/128‑1 (MQ=255)
                ttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAa‑tttat‑tt                                                                                                                 >  2:494927/1‑128 (MQ=255)
                 tttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAATAa‑ttttt‑ttt                                                                                                                >  2:3155954/1‑127 (MQ=255)
                  ttAAAAAATTTTTTATTTTAATAAATGTATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTTTATTTTTATAAT‑TTTTTTTCT‑A‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGa                                                                                                               <  2:1299762/128‑1 (MQ=255)
                   tAAAATATTTTTAATTT‑AATAAATTAATTTATTTTAAAATTTTTTAATTATTTTCAAATCATTTTATATTAATTAA‑TTTTTTTTT‑T‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTa                                                                                                            <  2:808248/128‑1 (MQ=255)
                     aaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATAAAa‑tttat‑tatataa                                                                                                            >  2:1903121/1‑122 (MQ=255)
                      aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGAT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAT‑TTTAT‑TTAATTaaa                                                                                                          >  2:1567687/1‑128 (MQ=255)
                      aaaaTTTTTAATTTTAAAAAATTAATTTTTTTTAAAATTTTTTAATTTTTTTTAAATAATTATATATTAATAAA‑TTTTTTTCT‑T‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTaaa                                                                                                          <  2:165076/128‑1 (MQ=255)
                        aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑‑TTTTTATTTTTTTTTA‑‑AAAAAAATAAAA‑TTTAA‑TTTATTaaaaat                                                                                                       >  1:1011335/1‑125 (MQ=255)
                             ttaattttaatAAAAGAATTATTTTTAAAATTTTTTAATTATTTTAAAATAAATTTATTTTAAACAA‑TTTTTTTAT‑T‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑tt                                                                                                 <  2:1967651/120‑1 (MQ=255)
                              tttatttaataatTGTATTTTTTTTTTAATTGTTAATTTTTTTTAAAATCATTTTTTATTTATTAA‑TTTT‑TTTT‑T‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAATCGTATA‑ttt                                                                                                <  2:3816409/121‑1 (MQ=255)
                                 ttttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑‑‑TTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTTATTAAACGTATA‑TTTAttt                                                                                            >  1:964750/5‑126 (MQ=255)
                                   ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TATTTTTTTTTTTTTTT‑‑AAAAAAATAAAA‑TTTATATTAATTAAA‑TTATA‑TTTATGt                                                                                            >  1:2353324/3‑128 (MQ=255)
                                    taattaattaaTTTTTTTTTAATTTTTTATATTTTTTTAAAATATTTATTTATTAATAAA‑TTTTATTCT‑A‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGtt                                                                                           <  1:1349972/119‑1 (MQ=255)
                                    taatAACTTAATTATTTTTTAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAA‑TTTTATTCT‑A‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGtt                                                                                           <  1:884749/127‑1 (MQ=255)
                                     aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAAAGTATA‑TTTATtttt                                                                                          >  1:1289358/1‑128 (MQ=255)
                                           tttattattTTTTAAATTTTTTAATTTTTTTTAAATAATTTTTAATTAATTAA‑TTTTATTCT‑A‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATaaa                                                                                    <  2:1094586/125‑1 (MQ=255)
                                           taatttattTTTAAAATTTTTAATTTTTTTTAAAATATTTATATATAAATAAA‑TTTTATTCT‑CTT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTtaataa                                                                                     <  1:3246122/124‑1 (MQ=255)
                                           tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑GTT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAAAAA‑TTAAT‑TTTATTAAAATTATA‑TTTATTTTtaata                                                                                      >  1:1800457/1‑128 (MQ=255)
                                            taaTTATTTTTAAATTTTTTAAATTTTTTTTATATATTTATTTTTTAATTAA‑TTTTTTTTT‑C‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATaaaa                                                                                   <  1:2285529/127‑1 (MQ=255)
                                            taaTTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATTTTAATAAA‑TTTTATTCT‑T‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATaaa                                                                                    <  2:2983323/127‑1 (MQ=255)
                                             aaTTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAACCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATTTTA‑TTTTT‑TTTATTAAACGTATA‑TTTATTTTTAATaaaaa                                                                                  >  1:400786/1‑128 (MQ=255)
                                               ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTTATTAAACTTATA‑TTTATTTTTAATAAAAATg                                                                                >  1:613414/1‑128 (MQ=255)
                                                tattTTTTTTATTTTTAATTTATTTTTATATTATTATTTTTTAATAAT‑TTTTTTTTT‑T‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATT‑TTTATGTTTAATAAAAATgg                                                                               <  2:220998/128‑1 (MQ=255)
                                                tattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTAATTAAAATAAAA‑TTTATTTTAAAAAAAAAtta                                                                               >  1:538819/1‑126 (MQ=255)
                                                  tttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTTATTAAAATTATA‑TTTATTTTTAATAAAAAtttaa                                                                             >  1:1078934/1‑124 (MQ=255)
                                                   ttttCATATTGTTAAATTATTATAATATAATTATATTTTAATAAA‑TTTTATTCT‑A‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGaaaa                                                                           <  2:3968450/128‑1 (MQ=255)
                                                   ttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTGATTAAAATTATA‑TTTATTTTTAATAAAAAttaaaa                                                                            >  1:2174578/1‑123 (MQ=255)
                                                      ttaaaTTTTTTAATTTTTTTTAAATTATTTTTTTTTAATAAATTTTTTTTTT‑T‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAaaag                                                                          <  2:2255992/126‑1 (MQ=255)
                                                      taaattttttAAATTTTTTTAAAATAATTTTTTTTTTATAAT‑TTTTTTTAT‑T‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAaaag                                                                          <  2:2525156/120‑1 (MQ=255)
                                                       cAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑GTT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTTATTAAAGTTATT‑TTTATTTTTATTAAAAATTTaaaat                                                                          >  1:3141453/1‑127 (MQ=255)
                                                        aaaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAAAAA‑TTAAT‑TTAATTAAAATTATA‑TTTATTTTAAATAAAAATTaaaaaaaa                                                                        >  2:587759/1‑128 (MQ=255)
                                                         aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATTCT‑C‑G‑‑‑TTTTTTTTTATTTTTTT‑‑AAAAAAAAAAAA‑AATAT‑ATAAAAAAAAATATA‑ATAATATTTAAAAAAAATATaaaaaaaat                                                                      >  2:929713/1‑127 (MQ=255)
                                                         aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTTATTAAAATTATA‑TTTATTTTTAATAAAAATTAAaaataaa                                                                       >  1:1935439/1‑128 (MQ=255)
                                                         aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTTATTAAACTTTTA‑TTTATGTTTAATAAAAATGTAaaataaat                                                                      >  1:2109412/1‑127 (MQ=255)
                                                         aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTTATTAAACGTTTA‑TTTTTTTTTAATAAAAATTTaaaaaaaat                                                                      >  2:372969/1‑127 (MQ=255)
                                                           ttGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAATATAA‑TTTAT‑TTTATTAAACTTTTT‑TTTATTTTTAATAAAAAttaaaataaaat                                                                      >  1:3380059/1‑117 (MQ=255)
                                                           ttGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTTTTTAAAATTATA‑TTTATTTTTAATAAAAATTAAaaagaaattt                                                                    >  1:2631933/1‑125 (MQ=255)
                                                           ttGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTTATTAAAATTATA‑TTTATTTTTAATAAAAATTTAaaataatttta                                                                   >  1:1546854/1‑123 (MQ=255)
                                                                  attattTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAAAAA‑TTTTT‑TTATATAAAATATTA‑TTTATTTTTTAAAAAAATTGAaaataaatttaaattta                                                             >  1:2574733/1‑118 (MQ=255)
                                                                   ttattTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAAAAA‑TTAAT‑TTTATAAAACTTAAA‑TTAATTTATAATAAAATTAAAAAAAaaattaaatttaat                                                            >  2:71453/1‑124 (MQ=255)
                                                                   ttattTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTTATTAAACGTATA‑TTTATTTTTAATAAAAATTTAAAATAAATTTAATTGTCat                                                           >  1:2526693/1‑128 (MQ=255)
                                                                    ttttttAAAATAATTATTTATTAATAAA‑TTTTTTGCT‑C‑‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCata                                                          <  2:436483/126‑1 (MQ=255)
                                                                    tattTTCAAATTATTATCTATTATTAAA‑TTTTATTCT‑C‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCata                                                          <  2:3262326/128‑1 (MQ=255)
                                                                      ttttCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑GTTTTTTTTTTTTTTTTTTTT‑‑AAAAAAATAAAA‑TTTTT‑TTTATTAAAATTATA‑TTTATTTTTAATAAAAATTTAAAATAAATTTAAttttaa                                                            >  1:2790104/1‑124 (MQ=255)
                                                                      ttttCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATTTAT‑TTTAT‑TTTATTAAACGTTTA‑TTTTTGTTTTATAAAAATGGAAAAGAAATTGAAttttaattat                                                        >  2:1210768/1‑120 (MQ=255)
                                                                      ttttAAAATTATTTTATATTATTAAA‑TTTTATGCT‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCataata                                                       <  1:3685904/128‑1 (MQ=255)
                                                                            aaTCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTTATTAAACGTATA‑TTTATTTTTAATAAAAATGTAAAATAAATTGAATTTTAATAAtaattt                                                   >  1:3891183/1‑128 (MQ=255)
                                                                              taatatatatttAATAAA‑TTTAATTCT‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAAtaatttaat                                                <  2:3029734/118‑1 (MQ=255)
                                                                              tCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTAT‑TTTATTAAACTTATA‑TTTATTTTTAATAAAAATTAAAAATAAATTTAATTTTAATAAtattttaa                                                 >  1:1499432/1‑128 (MQ=255)
                                                                                 ttATCTATTAATCAA‑TTTTATGCT‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATAAAA‑TTTAT‑TTTATTAAAAGTATA‑TTTTTTTTTATAAAAAATTAAAAATAAATTTAATTTTAATAAtaatttaatt                                               >  1:1603179/1‑128 (MQ=255)
                                                                                   aTCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAAAGTTTA‑TTTTTTTTTAATAAAAATGTAAAAAAAATTTAATTTTAAAAATAATTTAATTaaa                                            >  1:2441786/1‑128 (MQ=255)
                                                                                          aaTCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATTAAA‑TTTTT‑TTATTTAAACGTTTT‑TTTATTTTTAATAAAATTGAAAAAAAATTTTATTTTTAATTATATTTTAATAAAATATATaa                                     >  2:3572467/1‑128 (MQ=255)
                                                                                          aaTCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑A‑AAAAAAATAT‑TTTTT‑TTTTTTTAAAATTTATTTTTTTTTTAATAAAAAATTTAAAAAAAATTTATTTTAATAAAAATTTTATTAAA‑ATATaaa                                    >  1:3443759/1‑127 (MQ=255)
                                                                                            tCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTTATTAAACGTAAA‑TTTATTTTTAAAAAAAATGGAAAAGAAAGTTAATTTTAATAAAATTTTAATAAAttaataaaca                                   >  2:1025340/1‑121 (MQ=255)
                                                                                             taa‑TTTTATTTT‑A‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACaa                                  <  1:351685/127‑1 (MQ=255)
                                                                                              aa‑TTTTATGCT‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTTT‑TTGATTAAACGTATA‑TTTATTTTTAATAAAAATTTAAAATAAATTTAATTTTAAAAATATTTTATTTaaaatattaacaa                                  >  2:3521503/1‑118 (MQ=255)
                                                                                                    tATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAATAATTTTTT‑TTTTTTAAAGTTATT‑TTTTTTTTTAATAAAATTTTAAAA‑AAATTATATTTTAAATAAAATTTAATTAAAT‑TATAaaaaaattaat                           >  1:3758489/1‑121 (MQ=255)
                                                                                                     aTGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTTATTAAACGTTTA‑TTTATGTTTAATAAAAATGAAAAAGAAATATAATTTTAATAATAATTTAATTAAATATATAAAAATTTaatt                           >  1:1686975/1‑126 (MQ=255)
                                                                                                         ttatttttttttttttttttttttt‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGATAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAg                            <  2:3483793/120‑1 (MQ=255)
                                                                                                           ttttttttttttttttttttttt‑‑tAAAAAATATAA‑TTTAT‑TTGATTAAAATTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtt                          <  2:1800457/122‑1 (MQ=255)
                                                                                                            ttgttttttttttttttttttt‑‑ATAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGttt                         <  2:2070003/123‑1 (MQ=255)
                                                                                                              tttttttttttttttttttt‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:3228103/125‑1 (MQ=255)
                                                                                                              cgtttttttttttttttttt‑‑ACAAAAATATAA‑TTTAT‑TTTATTAAAAATTTT‑TTTATTTTTAAAAAAAAATGAAAAAAAATTGAATTGTAAAAATAATTTAATTAAATATAAAACAATTTAA‑TTTTaa                      >  2:2120329/4‑128 (MQ=255)
                                                                                                                 gtttttttttttttttt‑‑AAAAAAAAATAA‑TTTAT‑TTTATTAAACGTATA‑TTTTTTTTTAATAAAATATAAAAAGAAATTAAATTTTAATAATAATTTAATAAAATATATAAAAATTTAATTTTTaaaa                    >  1:3846943/2‑128 (MQ=255)
                                                                                                                  tttttttttttttttt‑‑AATAATATATTA‑TTTAT‑TTTATTAAAAGTATA‑TTTATTTTTAATAATAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                   <  1:1183877/128‑1 (MQ=255)
                                                                                                                  tttttttttttttttt‑‑AAAAAAATTTAA‑TTTAT‑TTTATTAAACGTATA‑TTTTTTTTTAATAAAAATGTTAAAGAAATTTAATTTTCATAAAAATTTAATTAAATATTTAAAAATTTAATTTTTaaaaa                   >  1:1869687/1‑127 (MQ=255)
                                                                                                                   ttttttttttttttt‑‑ATATATATATAA‑TTTAT‑TTTATTAATCGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAact                  <  2:1374553/128‑1 (MQ=255)
                                                                                                                   ttttttttttttttt‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATT‑TTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATATTAATTTAATTAAATTTATAACAATGTAAGTTTTAAAact                  >  1:3171992/1‑128 (MQ=255)
                                                                                                                     ttttttttttttt‑‑ACAAAAATATAA‑TTTTT‑TTGATTAAACGTATA‑TTTTTGTTTAATAAAAATGGAAAAAAAAGTGAATTGTCAT‑ATAATTTAATTAAATATATAACATTTTTAGTATGAAAacttac               >  2:2599851/1‑128 (MQ=255)
                                                                                                                       ttttttttttt‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact              <  2:3308284/128‑1 (MQ=255)
                                                                                                                         ttttttttt‑‑tCAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt            <  1:3018561/128‑1 (MQ=255)
                                                                                                                           ttttttt‑‑ACATATATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGATAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt          <  1:3798709/128‑1 (MQ=255)
                                                                                                                           ttttttt‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATTTTTAATAAAAATGGAAAAAAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt          >  1:3555169/1‑128 (MQ=255)
                                                                                                                            tttttt‑‑AAAAAAATATAA‑TTTAT‑TTGATTAAAAGTATA‑ATTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGATTTAAAACTTACtttttt         <  2:3637736/128‑1 (MQ=255)
                                                                                                                             ttttt‑‑ACAAATATATAA‑TTTAT‑TTGATTAAAAGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg        <  1:2024840/128‑1 (MQ=255)
                                                                                                                             ttttt‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg        <  2:3098036/128‑1 (MQ=255)
                                                                                                                               ttt‑‑AAAAAAATATAA‑TTTAT‑TTGATTAAACGTTTA‑TTTATTTTTAATAAAAATGGAAAATAAATTTAATTTTAATATTAATTTAATTAAATATATAAAAATTTATTTTTTAAAAATTAATtttttttt      >  1:2988788/1‑128 (MQ=255)
                                                                                                                                     |                                                                                                                                  
AAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCT‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTAT‑TTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420128‑420380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑