Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT54.2% 2.0 / 247.6 307intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (37/103);  new base T (54/112);  total (91/216)
Fisher's exact test for biased strand distribution p-value = 2.61e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.50e-02

Only 100 of 366 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCCTTTTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGC  >  CP016816/202369‑202620
                                                                                                                                   |                                                                                                                               
  taataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTTTTATCTT‑CACAAATAAAAAAAAAAAAAAACCC‑‑ttaaa‑a‑att‑aaaaa                                                                                                                          >  1:3296761/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCC‑‑AATAAA‑A‑AAT‑aaaaaaaa                                                                                                                       >  2:1761662/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑AAAAAAT‑AAAAAAAAACAAT‑‑ACAATTAAA‑A‑ATT‑aaaaaaaaa                                                                                                                      >  2:1647043/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaa                                                                                                                   >  1:2483325/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTTTTTATCTT‑CACAAATAAAAAAAAAAAAATACC‑‑AATAAA‑A‑ATT‑aaaaaaaaaaaaa                                                                                                                  >  1:903937/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCACC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaa                                                                                                                  >  1:2611381/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CAAAAATAAAAAAAAAACAATCCC‑‑‑ATAAA‑A‑AAT‑aaaaaaaaaaaaaa                                                                                                                 >  1:1054519/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTATATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAACCAATCCCCTT‑‑‑AA‑A‑AAT‑aaaaaaaaaaaaaaa                                                                                                                >  1:1764357/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaa                                                                                                                 >  1:317625/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTATATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCAAC‑‑TTAAA‑A‑AAT‑aaaaaaaaaaaaaa                                                                                                                 >  1:1179594/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTAT‑TATAATGTAGATACT‑CTTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAAAAAAC‑‑‑TAAA‑A‑AAT‑taaaaaaaaaaaaaa                                                                                                                >  2:754908/1‑128 (MQ=255)
            taGGTTAATTAAAAATCAATAAAATTTAATAA‑TCT‑TATAAACTACAACCC‑CGTTATCTATTTTTTTATTTTTTTATCTT‑AAAAAAAAAAAAAAAAACAATCCCCTTT‑‑AA‑A‑ATT‑aaaaaaaaaaaaaaa                                                                                                                <  2:1855355/127‑1 (MQ=255)
            aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CTTGATCTATTTTTTTATTTATTTATCAT‑CAAAAATAAAAAAAAAAAAAAAAAATT‑‑‑AA‑A‑AAT‑aaaaaaaaaaaaaaaa                                                                                                               >  1:1639473/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CAAAAATAAAAAAAAAAAAAATCACATaaaaa‑a‑aaa‑aaaaaaaaaaaaa                                                                                                                  >  1:1889445/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTAATCTT‑CACAAATAAAAAAAAAACAATCAC‑‑‑AAAAA‑A‑AAT‑aaaaaaaaaaaaaaaa                                                                                                               >  1:1432768/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCAT‑AAACTTAAT‑ATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaa                                                                                                               >  1:2813746/1‑128 (MQ=255)
              gttaataaaaaaTACTTA‑AAATTTAATATTTTT‑TA‑AATTTTGATCCA‑CGTGTTTTTTTTTTTTTTTTTTTTAATTT‑CCAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                             <  1:3039593/120‑1 (MQ=255)
              ggTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCATT‑‑‑AA‑A‑AAT‑aaaaaaaaaaaaaaaaaa                                                                                                             >  1:751593/1‑128 (MQ=255)
              ggTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCACC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaa                                                                                                              >  2:2684617/1‑128 (MQ=255)
              ggTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAACAATCACC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                             >  2:2605635/1‑128 (MQ=255)
              ggTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCA‑CGAGATCTATTTTTTTATATCTTTATCTT‑CACAAAAAAAAAAAAAACAATCCACaaaaaaa‑a‑aaa‑aaaaaaaaaaaaaaa                                                                                                                >  1:3101567/1‑128 (MQ=255)
              ggTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATACT‑CTTGATCTATTTATTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCAC‑‑‑ATAAA‑A‑AAT‑taaaaaaaaaaaaaaaaa                                                                                                             >  2:2707208/1‑128 (MQ=255)
               tttaaataaAAAAAAAT‑AAAATTAAAAATTTT‑TAAAATTTATATACT‑CTTTTTATATTTTTTTTTTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                             <  2:2758206/127‑1 (MQ=255)
               tgtaattaaATAACCAT‑AAACATAATAAATTT‑ATTAATGTAGTGCCG‑TGTGTTATTTTTTTTTATTTTTTTTTTTT‑TAAAAAAAAAAAAAAAAAAAACCCC‑‑ATAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                             <  1:2794427/126‑1 (MQ=255)
               gTTAATTAAAAAACCAT‑AAAATTAATAAATAT‑TATAAATTCTACCCT‑CGTGATTTTTTTTTTTTTTTGTTTATTTT‑AAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                             <  1:3086596/128‑1 (MQ=255)
                tttattaaAATAAAAA‑AAAATTAATAATTAT‑TATAATTTATATCAT‑CGTGTTTTATTTTTTTATTTTTTTATATT‑AACAAAAAAAAAAAAAACAAAACCCTTT‑‑AA‑A‑ATT‑aaaaaaaaaaaaaaaaaaa                                                                                                            <  2:2888397/125‑1 (MQ=255)
                ttaattaaAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTATTATTTGTTTATATT‑CACAAATAAAAAAAAAACAAAACC‑‑‑ATAAA‑A‑AAT‑taaaaaaaaaaaaaaaaaaa                                                                                                           >  2:3253919/1‑128 (MQ=255)
                ttaattaaAATAAAAT‑AAAATTAAAAAATAT‑AAAAAATTATAAACT‑AGTTATATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaa                                                                                                            <  2:1503210/128‑1 (MQ=255)
                ttaattaaAAAAACAT‑AAAATTAAAAATTCTATAAAAT‑TATAAAAT‑CCTTATCTATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaa                                                                                                            <  2:381143/128‑1 (MQ=255)
                  aattaaAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAA‑AAAATCAACTTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaaa                                                                                                           >  2:2572127/1‑128 (MQ=255)
                   attaaAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CTTTATCTATTTTTTTATTTGTTTATCTT‑CAAAAATAAAAAAAAAAAAAT‑‑CAAATAAAA‑A‑AAT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:178224/1‑127 (MQ=255)
                   attaaAATACCAT‑AAAATTAATAAATCT‑TATAATGTAAATACT‑AATTATATATTTTAATATTAGTTTATATA‑CACAAATAAAAAAAAAAAAAT‑‑CAAATAAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:2041781/1‑127 (MQ=255)
                     taaAATAACAA‑AAAATTAAAAAATCT‑TATAATTTATTTCCT‑TGTTTAATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTa                                                                                                       <  1:2887794/128‑1 (MQ=255)
                      aaaaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATACCC‑‑TTAAA‑A‑AAT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:673658/1‑124 (MQ=255)
                      aaaaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAAT‑‑CCAAATAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:803762/1‑124 (MQ=255)
                      aaaaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAAACCCC‑‑TAAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:2948575/1‑124 (MQ=255)
                      aaaaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAAAAAT‑‑ACAATTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:834486/1‑124 (MQ=255)
                        aataaaaT‑AAAATTAATAATTTT‑TATAATTTTTATAAT‑AGTGTTATTTTTTTTTATTTGTTTATCTT‑TAAAAAAAAAAAAAAAAAAATCCCCTTAAAAA‑T‑TAA‑AAAAAAAAAAAAAAAAAAAAACTaa                                                                                                      <  1:2565354/122‑1 (MQ=255)
                        aaTACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:393669/1‑128 (MQ=255)
                         atatCAT‑AAAATTAATAATTAT‑TATAAATTACATACT‑AGTTTTATATTTTTTTATTTTTTTAAAAT‑AAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                                   <  2:3194093/128‑1 (MQ=255)
                         aaaaacaaaaaCTTAATAAATAT‑TAAAATTTACAACCA‑CGTTATCAATTTTTTTAATTTTTTAACAT‑AAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                                    <  2:3058508/120‑1 (MQ=255)
                             cAT‑AAAATTAATAATATT‑TATAATTTTTATCATACGT‑ATTTTTTTTTTTATTTTTTTTAATA‑TAAAAATTAAAAAAAAAAAAACCCCATAAAAA‑T‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                 <  2:2149530/128‑1 (MQ=255)
                                 aaaataaataaataT‑TATAATATAGATCAT‑TGTATACTAATTTTTTAATTTTTTATCAA‑AAAAAAAAAAAAAAAAAAAATACCCAT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                           <  2:1096664/122‑1 (MQ=255)
                                 aaaCTTAATAATTAT‑TATAATTTATATAAT‑ATTTATATATTTTTTTATTTTTTTATATT‑AAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AA‑A‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                          <  2:442340/128‑1 (MQ=255)
                                   aatttataatTAA‑TATAATTTATATCCT‑AGTTATTTATTTTTTTATTTTTTTATCTT‑AAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                         <  2:2729086/123‑1 (MQ=255)
                                   aattAAAAATTCT‑TATAATTTCTCACCC‑CCCGATCTATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                          <  2:1436751/126‑1 (MQ=255)
                                    ataaataatTAT‑TAAAATTTACATACA‑CTTTATAAATATTTTTATTTTTTTATAAT‑AAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑A‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                                       <  2:520378/125‑1 (MQ=255)
                                          aatTTT‑TATAATTTATTTCCT‑CGTTAATTATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                   <  1:2504532/128‑1 (MQ=255)
                                                            atcaactttttttatttttttattttttTATCTT‑CAAAAATAAAAAAAAAACAATCCCC‑TTAAAA‑A‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                    <  2:3169814/116‑1 (MQ=255)
                                                             taaactttttatatttttttattttttTATTAT‑AAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                  <  2:1686450/117‑1 (MQ=255)
                                                             atcttgttttatatttttttattttttTAAATT‑AACAAAAAAAAAAAAAAAAAAACCC‑TTAAAA‑A‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                   <  2:1917808/117‑1 (MQ=255)
                                                             acctgtttaattattttatttTTTTTTTTAATT‑AAAAAAAAAAAAAAAAAAAATCCAATT‑‑‑AA‑A‑ATT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  2:1991824/117‑1 (MQ=255)
                                                              tcttgttttatATTTTTTTTTTTTTTTTTATT‑AAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  1:289983/118‑1 (MQ=255)
                                                              tatatttatttatttttttattttttTATATT‑AAAAAAAAAAAAAAAAAAAATACCCTTT‑‑AA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  2:2483325/118‑1 (MQ=255)
                                                              cT‑CGTGATC‑ATTTTTTTTTTTTTTTTTATT‑AAAAAAAAAAAAAAAAAAAAAAAACCCTTTAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  2:1828462/128‑1 (MQ=255)
                                                              actatttttatatttttttattttttTATATT‑AAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  2:468790/118‑1 (MQ=255)
                                                               attgtgtttttttttttttttttttTATATT‑‑AAAAATAAAAAAAAAAAAAAATCCCATT‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                <  1:401517/117‑1 (MQ=255)
                                                                tcttGATATATTTTATTATTTTTTTTACAT‑AAAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                               <  2:608711/125‑1 (MQ=255)
                                                                 agtttaatATTTTTTTATATTTTTAAAAT‑AAAAAAAAAAAAAAAAAAAATACCC‑‑‑TAAA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                             <  2:940885/121‑1 (MQ=255)
                                                                  tttttttatttttttattttttTATTTT‑TAAAAATAAAAAAAAAAAAATTCC‑‑TAT‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                            <  1:2643021/122‑1 (MQ=255)
                                                                  ttttttaatttttttatttttttATTTT‑TAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                             <  1:2041781/121‑1 (MQ=255)
                                                                  gtgaattatttattTAATTTTTTATATT‑AAAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                            <  2:2220713/122‑1 (MQ=255)
                                                                  cttaTCTATTTTTTTATTTGTTTATAAT‑AAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                            <  2:236151/125‑1 (MQ=255)
                                                                   ttatttATTTTTTTTTTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAATAAC‑‑ATTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                            <  2:2278536/123‑1 (MQ=255)
                                                                      tCTATTTTTTTATTTTTTTATATT‑AAAAAATAAAAAAAAAA‑AATACCCTT‑‑‑AA‑A‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                      <  2:2431015/128‑1 (MQ=255)
                                                                       atatttttttattttttTAAATT‑AAAAAAAAAAAAAAAAAAAATACCC‑‑ATAAA‑A‑AAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                      <  1:3011797/127‑1 (MQ=255)
                                                                        ttttttttttttttttTAATAT‑AAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑A‑AAT‑TTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                      <  2:1121472/126‑1 (MQ=255)
                                                                        tatttttttattttttTATTAT‑AACAAAAAAAAAAAAAAAAAAAACCTTAAAAATT‑AAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                          <  2:1595783/128‑1 (MQ=255)
                                                                          attttttttttttttATTTTATAAAAATAAAAAAAAAAAAAACCC‑‑‑ATAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                     <  1:343485/127‑1 (MQ=255)
                                                                           ttttttATTTTTTTAATAT‑AAAAAAAAAAAAAAAAAAAAT‑‑ACAATAAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                    <  2:1302584/128‑1 (MQ=255)
                                                                            ttttttttttttTATATT‑AAAAAAAAAAAAAAAAACAATCGCC‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                   <  1:2723145/128‑1 (MQ=255)
                                                                             ttttttttGTTTATCTT‑AAAAAATAAAAAAAAAAAAAAACCCTTAAAAATT‑AAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                     <  2:1180043/128‑1 (MQ=255)
                                                                             ttttATTTTTTTTTTTT‑AAAAAAAAAAAAAAAAAAAATCCCATT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                                 <  1:2743476/128‑1 (MQ=255)
                                                                              tttATTTTTTTAACTT‑AAAAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AAT‑‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                             <  2:3025043/128‑1 (MQ=255)
                                                                               tttttttttTATCAT‑AACAAATAAAAAAAAAAAAATACCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                                <  2:2978128/125‑1 (MQ=255)
                                                                               ttATTTTTTTATATA‑AAAAAATAAAAAAAAAAAAATAACC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                                <  2:962848/128‑1 (MQ=255)
                                                                                  ttttttTATATT‑AAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                             <  2:2860364/128‑1 (MQ=255)
                                                                                    tttatATCTT‑CAAAAATAAAAAAAAAAAAAACTCC‑‑ATAAA‑A‑ATT‑TAAAAAAAAAAAAAAATAAAACTAAAAACAAACTCTATTTCTTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGat                                           <  2:579669/124‑1 (MQ=255)
                                                                                      ttatatattaaaaaaTAAAAAAAAAAAAAAACCC‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                          <  2:3276535/116‑1 (MQ=255)
                                                                                        ttaaatataaaaaaaaaaaaaaaaaaaaCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                        <  2:3142886/118‑1 (MQ=255)
                                                                                         tataataaaaaaTAAAAAAAAAAAAATACCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                      <  2:2331204/119‑1 (MQ=255)
                                                                                           att‑CAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                    <  2:2944750/127‑1 (MQ=255)
                                                                                            attaaaaaaaaaaaaaaaaaaaaaCACCTTT‑‑AA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                    <  2:67031/122‑1 (MQ=255)
                                                                                              taaaaaaTAAAAAAAAAAAAAACACCTTAAAAA‑A‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                    <  1:2866866/124‑1 (MQ=255)
                                                                                                aaaaaaaaaaaaaaaaaaATACCC‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                                <  1:2186291/126‑1 (MQ=255)
                                                                                                 caAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AAT‑‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACAATATTTATTAAAATACCATTTTAAACCACATTTTATTTTTAAAATAAGATATTGAAAAaataaata                           >  2:2809729/1‑128 (MQ=255)
                                                                                                   aaTAAAAAAAAAAAAATACAC‑‑TTAAA‑A‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                             <  2:1463268/128‑1 (MQ=255)
                                                                                                        aaaaaaaaaaATCCCC‑TTAAAA‑A‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                         <  2:344983/128‑1 (MQ=255)
                                                                                                          aaaaaaaaATACACTTTTAAA‑ATAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                         <  1:2536975/128‑1 (MQ=255)
                                                                                                              aaaaaaataacattAAA‑A‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata                    <  2:190113/116‑1 (MQ=255)
                                                                                                                 aacaatacacataa‑a‑aat‑taaaaaAAAAAAAATAATATACTAAAAACAAAATCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                 <  2:875785/116‑1 (MQ=255)
                                                                                                                 aaaataacattAAA‑A‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                 <  2:1459541/119‑1 (MQ=255)
                                                                                                                  aaatacaaataaa‑a‑aataaaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTAATTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                 <  2:1741048/119‑1 (MQ=255)
                                                                                                                   aatacaattaaa‑a‑attaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAAATCTATTTCTTAAAATTCCCTATTATACCAAATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata                <  2:777495/121‑1 (MQ=255)
                                                                                                                   aataaaaattaa‑a‑aat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat               <  2:1270245/118‑1 (MQ=255)
                                                                                                                   aaactaattAAA‑A‑ATT‑TAAAAAAAAAAAAAAATAAAACTAAAAACAAACTCTATTTATTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat               <  1:1716292/121‑1 (MQ=255)
                                                                                                                        ccataaa‑a‑aat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc          <  1:2684617/125‑1 (MQ=255)
                                                                                                                         ccttaa‑a‑aat‑taaaaaAAAAAAAAAAAAAAA‑TAAAAAAAAACAATATTTATTAAAATTCCAAATTAAAACAAATTTTATTTTAAAAAAAATATTTTTAAAAAATATATATAAAATATATataataata        >  2:69002/5‑128 (MQ=255)
                                                                                                                              a‑a‑aat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACAGTATTTATTAAATTTCCCTATTATCCCCACTTTTATTTTTAAAAAAATTTATTGAAATATTTTTAATCTAATTTTTATTATACttaatt    >  1:323260/1‑123 (MQ=255)
                                                                                                                                a‑aat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTg   <  1:713443/128‑1 (MQ=255)
                                                                                                                                   |                                                                                                                               
AATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCT‑TATAATGTAGATCCT‑CGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCCTTTTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGC  >  CP016816/202369‑202620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑