Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9370CA30.7% 943.8 / 75.6 583intergenic (+321/+137)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (181/205);  new base A (132/39);  total (318/265)
Fisher's exact test for biased strand distribution p-value = 1.57e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 596 total aligned reads displayed.

TAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203807‑204064
                                                                                                                                            |                                                                                                                               
    gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAATATTTGGTTCa                                                                                                                                >  1:2160455/1‑128 (MQ=255)
       atatGTAAAAAATCCTATGTTCTATGCGTTTTATCATAATTAACAACATTACAACGCTTTCAAAGTGTA‑TTTTTTTG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAAc                                                                                                                              <  2:1530693/125‑1 (MQ=255)
            tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAGTAATATTTGTAAAAACCaaaa                                                                                                                         >  1:882193/1‑128 (MQ=255)
             taaaaaGCATATGTTCTAGGGTTTTTATTTTAATTATCAAAATTACAACGGTTTCAAATTGTT‑TTTTTTAG‑G‑GTTGT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAAc                                                                                                                        <  2:2220183/127‑1 (MQ=255)
               aaatGCTTATGTTTTCTGTTTTTTATTTTATTTTTCAAATTTAAATGGTTTTTAAAGTTTT‑TTTTTTTG‑G‑TTTT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACtat                                                                                                                     <  1:1911604/128‑1 (MQ=255)
                   gCCTATGTTCTTGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGTT‑TTTTTTT‑‑TTTTTTTTTGT‑TAAATT‑ATAAGTAACTTTTGGAAAACCCTAAAGtatag                                                                                                                   >  1:2295510/1‑127 (MQ=255)
                   gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGTTTTTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACtata                                                                                                                    >  1:1870716/1‑128 (MQ=255)
                      tATGTTTTAGTCTTTTTATTATACTTATCAAAAATACAACTCTTTCAAAGTGTA‑TTTTTTTG‑G‑GTTGT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                                                               <  2:2019203/128‑1 (MQ=255)
                      tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAATTAAGATTTGGATAAACAAAAAATATTTAaaaa                                                                                                              >  1:292729/1‑128 (MQ=255)
                            cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑ATTG‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑TAAAATAAAAATTAATATTTTTATAAAACAAAAATATAAAAAAAAAAtt                                                                                                         >  1:928733/1‑128 (MQ=255)
                              aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGTT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAAGATTTGGATCAACCAAATATATATAAAAAAAAttt                                                                                                        >  1:1777515/1‑127 (MQ=255)
                              aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAATAAAATTTTGATAAAACAAAAAAAAATAAAAAAAATTaa                                                                                                       >  2:235641/1‑128 (MQ=255)
                              aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGAGTA‑TATTTTAG‑G‑CTTG‑‑‑TATTTTT‑‑TTTTTTTTT‑T‑AAAAAA‑AAAAATAAAAATTAGAAACAACAAAACTA‑ATTAAAAAAAATaaaaa                                                                                                    >  2:2114303/1‑128 (MQ=255)
                               tgatttttATTATAATTATAAAAATTACATAGCTTTCAAAGTGTT‑TTTTTTAT‑T‑GTTG‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaa                                                                                                     <  2:2382986/125‑1 (MQ=255)
                                gttttttATTATACTTATTAAAATTAAAACGCTTTAAAATTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaa                                                                                                     <  1:2148937/126‑1 (MQ=255)
                                 cTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAGTAAAATTTTGATCAACCAAAACAATATAAAAAAAATTaaaaa                                                                                                    >  1:2100259/1‑128 (MQ=255)
                                 cTTTTTATTATAATTATCAACATATCAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                                                                   <  1:2240912/128‑1 (MQ=255)
                                   ttttATAATAATTAATAAAATTAAAACGCTTTAAAATTTTATTTTTTTTG‑GTTTTT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                                                                   <  2:2161743/128‑1 (MQ=255)
                                     ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAATTAATATTTGGATTCACCAAAACTAATAAAAAAAAATTAAAAAAAAt                                                                                                >  2:452868/1‑128 (MQ=255)
                                      ttttatACTTATCAAGATTACAACTCTTTATAAGTTTA‑TTTTTTTGTT‑TTTT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAta                                                                                               <  2:943241/126‑1 (MQ=255)
                                      tattatACTTATCAAAATTACAAATCTTTAAAATTTTA‑TTTTTTTG‑GTTTTT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAta                                                                                               <  2:259061/128‑1 (MQ=255)
                                       attatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTGGATAAACCAAAAAAATATAAAAAAAATTAAAAAAAAtaa                                                                                              >  1:1957802/1‑127 (MQ=255)
                                       attatACTTATCAACATTACAACGCTTTCAAAGTGTA‑GTTTTTAG‑G‑CTTGTT‑TTTTTTT‑‑TTTTTTTTTGT‑TAAAAT‑AAAATTAAATTTTTGTTAAACCCAAAC‑ATATAAAAAAAAAAaataaaaaaga                                                                                              >  1:1232254/1‑125 (MQ=255)
                                        ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGTTTTTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAATTTTTTAAAAACAAAAAATATATAAAAAAAATTAAAAAAAAta                                                                                               >  1:1190976/1‑128 (MQ=255)
                                        ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGTT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTGTATAAAACAAAAATATATAAAAAAATTTAAaataaatat                                                                                              >  1:752125/1‑127 (MQ=255)
                                        ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAA‑AAAAGTAATATTTGTATAAAAAAAAAATATATAAAAAAAATAaaaaaaaaaatt                                                                                             >  1:716332/1‑124 (MQ=255)
                                        atttaattATCAAAATTACAAACCTTTCAAATTGTT‑TTTTTTTT‑G‑TTTGTTTTTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAta                                                                                               <  2:1963627/122‑1 (MQ=255)
                                         tataCTTATCAACATTACAACGCTTTCAAAGTGGA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑TAAAATAAAAAGTAATATTTGGTTCAACAAAAAAAATATAAATAAAATTAAAAAAAAttgtt                                                                                            >  2:2257139/1‑128 (MQ=255)
                                           taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAAATTTGTAAAAACAAAAAAaattaaaaaaaaattaaaaaaatatatttt                                                                                          >  1:313491/1‑120 (MQ=255)
                                           taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAATTAAGATTTGGAACAACCAAAACAATATCAAAAAAATTAAAAAAAAtagttta                                                                                          >  2:1837149/1‑128 (MQ=255)
                                              ttATCAACATAACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTTA‑TTTTTTTTTTTAAAAAAT‑AAAATTAATATTTGTATCAACCAAAAAAAATAAAAAAAAATTAAAAAAAAtatattaat                                                                                        >  2:2301438/1‑121 (MQ=255)
                                               tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAATTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTAATTg                                                                                      >  2:1109936/1‑128 (MQ=255)
                                                aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGTT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAAGTAAATTTTGGTACAACCAAAATTATAATAAAAAAATTAAAAAAAAttttttttttg                                                                                      >  1:1729040/1‑118 (MQ=255)
                                                aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAAtattttttttta                                                                                     >  1:2336273/1‑122 (MQ=255)
                                                  cAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATAAAAATATGATAAAACAAAAAAAAAAAAAAAAAAATTAAAAAAAAtatatattttagtt                                                                                   >  2:687201/1‑116 (MQ=255)
                                                   aaaaTTACAACGCTTTAAAAGTGTT‑TTTTTTAG‑G‑TTTG‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGttt                                                                                 <  1:2026850/125‑1 (MQ=255)
                                                      tttACAACTGATTAAAATTTTA‑TTTTTTAT‑G‑CTTT‑‑‑TTTTTTTTATTTTTTTTTGT‑AAAAAT‑AATAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTc                                                                                <  1:2082504/127‑1 (MQ=255)
                                                      aTTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAAGTTTGTTTAAAACAAAAATATAGAAAAAAAATTAAAAAAAAAATTTTTGTTGAtttaaa                                                                               >  1:245258/1‑125 (MQ=255)
                                                          cAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑TAAATT‑AAAAATAAAATTTTGTTAAACCAAAACTATTTCAAAAAAAATAAAAAAAATAGTTTATTTTAGTTTAAAAtat                                                                          >  2:1370817/1‑126 (MQ=255)
                                                            aCGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGTT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAAATTTTTGATCAACCAAAAATATTTAAAAAAAATTAAAAAAAATATTTTATTTGATTTTaaaaata                                                                          >  2:1227152/1‑125 (MQ=255)
                                                             cGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTTA‑AAAAAT‑AAAATTAAGATTTTGTTCAACCAAAAATAAATAAAAAAAATTAAAAAAACTTTTTTTGTTTAGTTTaaaaataaaa                                                                       >  1:1551231/1‑122 (MQ=255)
                                                              gCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGTTTTTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAGTAAGATTTGGATAAACCAAAACTAAATAAAAAAAATTAAAAAAAATAGTTTTGTTGAGTTTAAAATCTg                                                                         >  1:855730/1‑128 (MQ=255)
                                                              gCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGTT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAGTAATATTTTGAAAAAACAAAACTATATAAAAAAAATTAAAAAAAAAATTTTAGTTTATTTTaaaaaaatc                                                                        >  1:1841121/1‑123 (MQ=255)
                                                              gCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAATAAAATTTTGAAAAACCAAAAATAAAAAAAAAAAAATAAAAAAAAATTTTTATTTGAATTTCAAAtagaaa                                                                       >  1:2122549/1‑123 (MQ=255)
                                                                tttCAAAGTGTA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAATTAATATTTTGATAAACCAAAAAAATATCAAAAAAATTAAAAAAAATATTTTTTTTGAGTTTAAAATATGCatat                                                                    >  2:2091414/1‑128 (MQ=255)
                                                                 ttCAAAGTGTA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAACATTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCatata                                                                   >  1:466841/1‑128 (MQ=255)
                                                                   cAAAGTGTA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAGTAAATTTTGGATAAACCAAAAATTTATAAAAAAAATTAAAAAAAAATTTTTATTTTATTTTAAAATATGAatttaat                                                                 >  1:564080/1‑126 (MQ=255)
                                                                   aatattttttttttttTG‑G‑TTGT‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                                                                  <  1:2212713/118‑1 (MQ=255)
                                                                        tgtA‑TTTTTTAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAGTAATATTTGGATAAACCAAAACTTTATAAAAAAAATTAAAAAAAATATTTTAGTTTATTTTAAAATCTGCatatattttaa                                                             >  1:2000951/1‑123 (MQ=255)
                                                                        tagttttttttAG‑T‑TATA‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATAAACCTTAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATTTATAGTAc                                                             <  2:802727/123‑1 (MQ=255)
                                                                             ttttttAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAAAATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAAAATTTTAGTTTATTTTAAAAAATGAATATATATTACAAAg                                                         >  2:608859/1‑128 (MQ=255)
                                                                               ttttAG‑G‑CTTGT‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAGATTTGGAAAAACCAAAACATTTTAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTAAAAATTGCATATATA‑TACaaaagga                                                      >  1:380594/1‑124 (MQ=255)
                                                                               ttttAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAAGTAAGATTTGGATAAACCAAAAATATATAAAAAAAATAAAAAAAAATATTTTATTATATTTTAAAATATTCATAAATATTAAAAAAGaa                                                      >  2:383068/1‑128 (MQ=255)
                                                                                      aggcttgttttttttt‑‑ttttttttttt‑AAAAAT‑AAAATTAAGATTTGGATAAACCAAAACAAAAACAAAAAAATTAAAAAAAAAAGTTTAGTTTATTTTAAAATATGCATATATATTACAAATGAAtt                                                    >  2:1880922/10‑128 (MQ=255)
                                                                                        tttttttttttttt‑‑tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                  <  1:2067860/121‑1 (MQ=255)
                                                                                         ttttttttttttt‑‑tttttttttGT‑AAAAAT‑TAAAGTAAGATTTGGATTAACTTAAAATATATCAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  2:134075/122‑1 (MQ=255)
                                                                                          ttgttttttttt‑‑ttttttttttt‑AAAAAT‑AAAAGTAAGATTTGGATAAACCAAAAATATTTCAAAAAAATTAAAAAAAATATTTTATTTGTGTTTAAAAAATTCATATTTAGTAAAAATGAATTTATg                                                >  1:509645/6‑128 (MQ=255)
                                                                                          gttttttttttt‑‑ttttttttttt‑AAAAAT‑AAAATTAAGATTTGGTTCAACCAAAAATATTTAAAAAAAATTAAAAAAAATTTTTTTTTTTAGTTTAAAATATGAATATATTTTAAAAAGGAATTTAtt                                                >  1:1447986/6‑127 (MQ=255)
                                                                                           g‑‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAAAATTTTGATAAACAAAAAAAAAATAAAAAAAATTAAAAAAAAAAGTTTATTTTATTTTAAAATATGAATATTAATTAAAAAAGAATTTAtaaata                                            >  2:52121/1‑123 (MQ=255)
                                                                                              tttttttt‑‑ttttttttttt‑AAAAAT‑AAAAGTAATTTTTGGATCAACCAAAACTTTATAATAAAAATTAAAAAAAATATTTTTTTTGAATTTAAAATCTTCATATATAGTAAAAAGGATTTTATGATAg                                            >  1:2056962/2‑128 (MQ=255)
                                                                                               ttttttt‑‑ttttttttttt‑AAAAAT‑AAAAGTTAGATTTGGATCAACCAAAAATATTTAAAAAAAATTAAAAAAAATAGTTTTTTTTAGTTTCAAATAGGAATATTTTTTACAAATGATTTTATtatata                                           >  1:1123922/1‑126 (MQ=255)
                                                                                                tttttt‑‑tttttttttGT‑AAAAAT‑AAAATTAAGAATTGTGTAAACCAAAAATATATAAAAAAAATTAAAAAAAATTTTTTATTTGTTTTTAAAATATACATATTTATTAAAAAGGAATTTTTGATATaa                                          >  1:2384893/1‑128 (MQ=255)
                                                                                                 ttttt‑‑tttttttttGT‑AAAAAT‑AAAAGTAAGAGTTGGATCAACCATAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  2:1286734/128‑1 (MQ=255)
                                                                                                   ttt‑‑tttttttttGT‑AAATAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                       <  1:1977475/128‑1 (MQ=255)
                                                                                                          tttttttGT‑AAATAT‑TAAAGTAATATTTTGATAAATTAAAACTATATTAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                                  <  2:326449/128‑1 (MQ=255)
                                                                                                          tttttttGT‑AAAAAT‑AAAAGTAAGATTTGGTACAACCAAAAATATATAAAAAAAATAAAAAAAAAAATTTTATTTTATTTTCAAAAGATAATATATAATAAAAAATATATTATGATACaaaaaaaagt                                  >  1:807579/1‑125 (MQ=255)
                                                                                                              tttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGGATTa                              <  1:1385480/128‑1 (MQ=255)
                                                                                                               ttGT‑AAATAT‑AAATGTAAGATTTGGATAAATCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  2:1184297/128‑2 (MQ=255)
                                                                                                                  ttataaaT‑AAAATTAATATTTGGATCAAACAAAAATATATATAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt                           <  2:1715318/124‑1 (MQ=255)
                                                                                                                      aaaT‑AATATTTAGTTTTGGATCAACCAAATCTATATCAAAATAATTATAATTAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATa                       <  1:986612/128‑1 (MQ=255)
                                                                                                                      aaaT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATa                       <  2:2123720/128‑1 (MQ=255)
                                                                                                                         t‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAGTTATGATAGAAAAAAAAGGATTAGTTGATACTcc                   >  2:1588576/1‑128 (MQ=255)
                                                                                                                           taaaGTAAGATTTTGATCTAACAATACTATATCAAAAAAATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:1279523/127‑1 (MQ=255)
                                                                                                                           aaaaGTAATATTTGGATCAAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:1926988/128‑1 (MQ=255)
                                                                                                                           aaaaGTAAGATTTTGTTAAAAAAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGATTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:1538605/128‑1 (MQ=255)
                                                                                                                           aaaaGTAAGATTTGGATAAACCAAAACTATATCAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  2:2005908/128‑1 (MQ=255)
                                                                                                                            aaaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  1:2267292/128‑1 (MQ=255)
                                                                                                                             aattAAGATTTTGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGATTCTAATCTGCATATATTGTACAAAGGAATTTATGATATAAAAAAATGTATTTGTTGATTATCCAt                 <  2:2052835/125‑1 (MQ=255)
                                                                                                                             aaGTAATATTTGGATCAACAAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 <  1:640155/128‑1 (MQ=255)
                                                                                                                               gTAAGATTTGTATAAAAAAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG‑AAAAAATGGATTAGTTGATAATCCAtttt              <  2:1384667/128‑1 (MQ=255)
                                                                                                                                 aaGATTTGGATCAACCAACACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  1:258110/1‑128 (MQ=255)
                                                                                                                                 aaGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCATATCTGCATATATAGTACAAAGGAAGTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  2:1014383/1‑128 (MQ=255)
                                                                                                                                  aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATATAAAAAAATAGATTAGTTGATAATCCAtttttt            >  2:2318232/1‑128 (MQ=255)
                                                                                                                                  aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:876264/1‑128 (MQ=255)
                                                                                                                                  aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:540975/1‑128 (MQ=255)
                                                                                                                                  aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:149911/1‑128 (MQ=255)
                                                                                                                                  aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGATGATAATCCAtttatt            >  1:1004050/1‑128 (MQ=255)
                                                                                                                                  aGATTTGGATCAACAAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            <  2:570587/128‑1 (MQ=255)
                                                                                                                                   gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           >  2:2411738/1‑128 (MQ=255)
                                                                                                                                   gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATAAGTTGATAATCCAattttaa           >  1:107569/1‑126 (MQ=255)
                                                                                                                                   gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAGTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           >  1:218003/1‑128 (MQ=255)
                                                                                                                                     ttttGATAAAACAAAAATATATTAAAAAAATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         <  2:1447986/128‑1 (MQ=255)
                                                                                                                                     tttGGATTAAACAAAACTATATTAAATAAATTAAAAAAATTAGTTTAGTTGAGTTTCATATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         <  1:2422491/128‑1 (MQ=255)
                                                                                                                                     tttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         >  2:1082223/1‑128 (MQ=255)
                                                                                                                                     tttGGATCAACAAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         <  2:1855956/128‑1 (MQ=255)
                                                                                                                                      tttgATAAATCAAATATATATCTAAAAAATTATAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTTGTTGATAATCCATTTTTTAAtt        <  2:1729040/125‑1 (MQ=255)
                                                                                                                                       tGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt       >  1:1158675/1‑128 (MQ=255)
                                                                                                                                          aTCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGt    >  2:764735/1‑128 (MQ=255)
                                                                                                                                           tCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAAGATAGAAAAAAATGGATTAGTTGATAATCCATGTTTTAATATTGta   >  2:1671786/1‑127 (MQ=255)
                                                                                                                                            cAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAg                                                                                    <  1:1670288/46‑1 (MQ=255)
                                                                                                                                            |                                                                                                                               
TAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑CTTG‑‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203807‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑