Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9460CA31.0% 1040.3 / 75.3 597intergenic (+330/+128)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (179/226);  new base A (130/52);  total (316/281)
Fisher's exact test for biased strand distribution p-value = 8.88e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 612 total aligned reads displayed.

TAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTAATTTTGTTTATTAAATTA  >  CP016816/203819‑204073
                                                                                                                                        |                                                                                                                                
 aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAG‑ATAATTAAGATTTGGAACAACCAAAAc                                                                                                                                  >  2:2333205/1‑128 (MQ=255)
 aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTT‑T‑AAAAAA‑AAAAGTAAGATTTGGTTCAACAAAAACta                                                                                                                                >  1:932372/1‑128 (MQ=255)
   aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAATTAATTTTTGTAACAACAAAAAcaa                                                                                                                                >  1:2450541/1‑126 (MQ=255)
    aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAGTAAAATTTTGATCTAACAAAAatat                                                                                                                               >  1:639405/1‑128 (MQ=255)
     aaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGTTTTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAATTAAGATTTGTTTCAACCAAAAatat                                                                                                                               >  1:1984780/1‑128 (MQ=255)
         cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTTTT‑TAAAAT‑AAAAGTATGATTTGGTTCAACCAAATCTATATCaaa                                                                                                                         >  1:1396252/1‑128 (MQ=255)
         cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑‑‑TTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTTGATCAACCAAAACTATATaaaaaa                                                                                                                       >  1:253488/1‑128 (MQ=255)
         cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑A‑TTG‑‑TTTTTTT‑‑TTTTTTTTTGA‑ATAAAT‑TAAATTAATATTTTGATAAAACAAAAATAAATaaaa                                                                                                                         >  1:2093060/1‑128 (MQ=255)
          tATTTTTTAGTCTTTTTATTATAATTATAAAAATTACAACGCTTTAAAATGGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                                                                         <  1:312408/128‑1 (MQ=255)
             ttttttttgtatttATTTTAATTATCAACATGACAACTCATTTAACTGGTA‑TTTTTTAGT‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCaaaaaa                                                                                                                      <  1:2268725/117‑1 (MQ=255)
             gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑TAAAAT‑AAAAGTATCTTTTGTATCAAACAAAAATATATCaaaaaa                                                                                                                      >  1:1548343/1‑128 (MQ=255)
             gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTGTATCAACCAAAAATATTTCaaaaaa                                                                                                                      >  1:2193312/1‑128 (MQ=255)
                cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTTTTAAAAAAT‑AAAAATAATATTTTTATAAAAAAAAAAAATAAAAAAAAAAtt                                                                                                                   >  2:798464/1‑128 (MQ=255)
                 tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATAAATATTTTTATAAAACAAAAATATATAAAAAAAAtaa                                                                                                                  >  1:1758386/1‑126 (MQ=255)
                  aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑ATAAAT‑AAAAATAAATTTTGATTCAACCAAAAATTTATAAAAAAAATTaa                                                                                                                 >  2:1514481/1‑128 (MQ=255)
                  aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAAATAAAATTTTGATAAAACAAAAAAAAATAAAAAAAATTaa                                                                                                                 >  2:235641/1‑128 (MQ=255)
                    gttttttATTATACTTATTAAAATTAAAACGCTTTAAAATTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaa                                                                                                               <  1:2148937/126‑1 (MQ=255)
                    ggtttttATTATACTTATAAAAATTACAACGCTTTAAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑‑TTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                                                                             <  2:2386810/126‑1 (MQ=255)
                     cTTTTTATTATAATTATCAACATATCAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                                                                             <  1:2240912/128‑1 (MQ=255)
                       ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGTTTTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATAAAAATATGTAAACACCAAAAATAAAAAAAAAAATTTaaaaaa                                                                                                             >  2:1246011/1‑128 (MQ=255)
                        tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTT‑T‑AAAAAA‑AAAATCAAAAATTTGATAAAACAAAAAAAAATAAAAAAAATAaaaaaaaaaa                                                                                                         >  2:528011/1‑126 (MQ=255)
                          tattatACTTATCAAAATTACAAATCTTTAAAATTTTA‑TTTTTTTGGTT‑TTT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAta                                                                                                         <  2:259061/128‑1 (MQ=255)
                           attatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAGATTTGTATAAAACAAAAATATATAAAAAAAATTAAAAATAAtag                                                                                                        >  1:1800743/1‑128 (MQ=255)
                             tataCTTATCAACATTACAACGCTTTCAAAGTGGA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTTTT‑TAAAATAAAAAGTAATATTTGGTTCAACAAAAAAAATATAAATAAAATTAAAAAAAAttgtt                                                                                                      >  2:2257139/1‑128 (MQ=255)
                               taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAATTAAGATTTGGAACAACCAAAACAATATCAAAAAAATTAAAAAAAAtagttta                                                                                                    >  2:1837149/1‑128 (MQ=255)
                                 cTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAAAATTTTGATAAACCAAAAATATTTAAAAAAAATTAAAAAAAAtattttattt                                                                                                 >  1:203303/1‑128 (MQ=255)
                                  ttATCAACATAACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTTA‑TTTTTTTTTTTAAAAAAT‑AAAATTAATATTTGTATCAACCAAAAAAAATAAAAAAAAATTAAAAAAAAtatattaat                                                                                                  >  2:2301438/1‑121 (MQ=255)
                                        tatttttttattttttAAAGTTTATTTTTTTTGA‑T‑TTT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGttt                                                                                           <  1:157182/116‑1 (MQ=255)
                                          tttACAACTGATTAAAATTTTA‑TTTTTTATG‑C‑TTT‑‑TTTTTTTTATTTTTTTTTGT‑AAAAAT‑AATAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTc                                                                                          <  1:2082504/127‑1 (MQ=255)
                                           ttACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGTTTTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATAAATTTTTTTAACAACCAAAACTATTTAAAAAAAAAAAAAAAAAAtattttattttatttaaa                                                                                         >  2:1696707/1‑120 (MQ=255)
                                             aCAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTTGATAAACCAAAAAAATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTaaaaa                                                                                      >  2:2067860/1‑127 (MQ=255)
                                              cAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTTGT‑TAAATT‑AAAAATAAAATTTTGTTAAACCAAAACTATTTCAAAAAAAATAAAAAAAATAGTTTATTTTAGTTTAAAAtat                                                                                    >  2:1370817/1‑126 (MQ=255)
                                              cAACGCTTTAAAAGTTTT‑TTTTTTAGT‑G‑TTGTTTTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                                                                      <  2:2112397/128‑1 (MQ=255)
                                               aaCGCTTTCAAAGAGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAATTAATTATTGTAACAACACAAACAAAATAAATAAAAGTAAAAAAAAAAGATAATTTGATGTACAAAtata                                                                                   >  2:1022650/1‑125 (MQ=255)
                                                aCGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAATATTTGGTTCAACCCAAACTATTTCAAAAAAATTAAAAAAAATATTTTAGTTGATTTTaaaaagtg                                                                                   >  1:118672/1‑124 (MQ=255)
                                                 cgtttttaatttgtA‑TTTTTTTGG‑G‑TTG‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCa                                                                                 <  1:1890630/117‑1 (MQ=255)
                                                    tttCAAAGTGTA‑TTTTTTAGG‑C‑TTGTTTTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAATAAAAATTTAGATAAACCAAAAATTTATAAAAAAAATTAAAAAAAATAATTTAATTTAATTTaaaaaataaaa                                                                                >  1:1936403/1‑121 (MQ=255)
                                                     ttCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAACATTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCatata                                                                             >  1:466841/1‑128 (MQ=255)
                                                     ttCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TATTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAATAAAAAAAAAAAATTATGTTTAGTTTAAAATCTGCataat                                                                             >  1:677922/1‑126 (MQ=255)
                                                       aatattttttttttttTGG‑T‑TGT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                                                                            <  1:2212713/118‑1 (MQ=255)
                                                         aattttA‑TTTTTTATG‑CTTTT‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                                                                          <  1:2158822/123‑1 (MQ=255)
                                                             gtA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTTGATAAACAAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGAATTTATATTaaa                                                                      >  1:795232/1‑126 (MQ=255)
                                                             gtA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAA‑AAAATTAAGATTTGGATAACCCAAAACTATATAAAAAAAATTAAAAAAAATTGTTTTTTTTAGTTTCAAATCTGGAATTATAGTACa                                                                      >  2:1944782/1‑128 (MQ=255)
                                                             gtA‑TTTTTTAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAA‑AAAAGTAAAATTTGGTTAAACCAAAACTTTATAAAAAAAATTAAAAAAAATTTTTTATTTGATTTTAAAAAATGCATATATAGTACa                                                                      >  1:201610/1‑128 (MQ=255)
                                                               ttttttttTGT‑T‑TTT‑‑TTTTTTT‑‑TTTTTTTTTGT‑TATAAT‑AATAGTAAGATTTGGATCTACAAAAACTATATCAAAATAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaaa                                                                    <  2:376533/126‑1 (MQ=255)
                                                                   ttttAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAGATTTGGAAAAACCAAAACATTTTAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTAAAAATTGCATATATA‑TACaaaagga                                                                >  1:380594/1‑124 (MQ=255)
                                                                      tAGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAAATTTGGATAAACAAAAAATATATAAAAAAAATTAAAAAAAAAATTTTAGTTTATTTTAAAATCTGCATATTTTTTACAAATGAAtt                                                              >  1:1079967/1‑128 (MQ=255)
                                                                       aGG‑C‑TTGT‑TTTTTTT‑‑TTTTTTTTTTT‑AAAAAA‑AAAAGTAATATTTGGTACAACCAAAAAAATATAAAAAAAATTAAAAAAAATATTTTAGTTGATTTTCAAAACTGCATTAATATTAAAAAGGAAttt                                                             >  2:2122707/1‑128 (MQ=255)
                                                                          ttgtttttttttttt‑‑tttttttttGT‑AAAAAT‑AAATTTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                             <  2:1878702/120‑1 (MQ=255)
                                                                           c‑TTG‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAATTAAGATTTGGATCAACCAAAAAAATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTCAAATATGAATTAATATTACAAAGGAATTTAtaa                                                         >  2:2012875/1‑126 (MQ=255)
                                                                            ttttttttttttt‑‑tttttttttGT‑AAAAAT‑TAAAGTAAGATTTGGATTAACTTAAAATATATCAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                           <  2:134075/122‑1 (MQ=255)
                                                                                gtttttttt‑‑tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATTTAAAAAAAATTAAAAAAAATAGTTTATTTGATTTTCAAATCTGCATATATATTACAAAGGAATTTATGAtt                                                       >  1:283498/3‑127 (MQ=255)
                                                                                gtttttttt‑‑tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATa                                                       <  2:925772/126‑1 (MQ=255)
                                                                                  ttttttt‑‑ttttttttttt‑AAAAAT‑AAAATTAATATTTGGTAAAACCAAAAATTTATAAAAAAAATTAAAAAAAAAATTTTATTTTTGTTTCAAATCTTAATTTTTTTTAAAAAGGAATTTATAAttaa                                                     >  1:827790/1‑125 (MQ=255)
                                                                                  ttttttt‑‑ttttttttttt‑AAAAAT‑AAAAGTTAGATTTGGATCAACCAAAAATATTTAAAAAAAATTAAAAAAAATAGTTTTTTTTAGTTTCAAATAGGAATATTTTTTACAAATGATTTTATtatata                                                     >  1:1123922/1‑126 (MQ=255)
                                                                                   tttttt‑‑tttttttttGT‑AAATAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                    <  2:869439/128‑1 (MQ=255)
                                                                                   tttttt‑‑tttttttttGT‑AAAAAT‑ATAAGTAAGATTTGGATCAACCAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                    <  2:1291554/128‑1 (MQ=255)
                                                                                   tttttt‑‑tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                    <  1:1917022/128‑1 (MQ=255)
                                                                                    ttttt‑‑tttttttttGT‑ATATAT‑AAATTTAAGATTTGTATAAAAAAAAAATATATAAAAAAAATTTAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTAAAAAGGAATTTATGATAGaaa                                                   <  2:1432079/128‑1 (MQ=255)
                                                                                           tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCATAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt                                              <  2:706280/128‑1 (MQ=255)
                                                                                           tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt                                              <  1:2349192/128‑1 (MQ=255)
                                                                                                  ttGT‑AAATAT‑AAATGTAAGATTTGGATAAATCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                       <  2:1184297/128‑2 (MQ=255)
                                                                                                  ttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                       <  2:2219429/128‑2 (MQ=255)
                                                                                                       aataaT‑ATAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTTAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac                                   <  1:530012/125‑6 (MQ=255)
                                                                                                       aaaaaT‑AAAAGTTAGATTTTGATCAAAAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑a                                  <  1:742169/128‑1 (MQ=255)
                                                                                                       aaaaaT‑AAAAGTAAGATTTGTATAAACCAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑a                                  <  1:886681/128‑1 (MQ=255)
                                                                                                         aaaT‑AATATTTAGTTTTGGATCAACCAAATCTATATCAAAATAATTATAATTAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATa                                <  1:986612/128‑1 (MQ=255)
                                                                                                         aaaT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATa                                <  1:2121492/128‑1 (MQ=255)
                                                                                                           aT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATTAGTTG‑ATAAt                              >  1:1960258/1‑128 (MQ=255)
                                                                                                            t‑AAATGTAAGATTTGGATCAACAAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATc                             <  2:1854467/128‑1 (MQ=255)
                                                                                                              aaaaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATcc                            <  2:609814/128‑1 (MQ=255)
                                                                                                                aattAAGTTTTGGATAAACCTTATATATATGAAAAAAATTAAATATAATAGTTTAGTTGAGTTTCAAATCTGCTTATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCAt                          <  1:1220742/125‑1 (MQ=255)
                                                                                                                aaGTAATATTTTGATAAAAAAAAACTATTTCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCAt                          <  2:432434/128‑1 (MQ=255)
                                                                                                                aaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATcc                            <  1:1848568/126‑1 (MQ=255)
                                                                                                                aaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCAt                          <  1:2064174/128‑1 (MQ=255)
                                                                                                                aaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCAAAAATAGTACAAAGGAATTAATGATAGAAAAAAATTGATTAGTTG‑ATAATCCAt                          >  2:577399/1‑128 (MQ=255)
                                                                                                                  gTAAGATTTGTATAAAAAAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG‑AAAAAATGGATTAGTTG‑ATAATCCAtttt                       <  2:1384667/128‑1 (MQ=255)
                                                                                                                     aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCAtttttt                     >  1:240054/1‑128 (MQ=255)
                                                                                                                     aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGATG‑ATAATCCAtttatt                     >  1:1004050/1‑128 (MQ=255)
                                                                                                                     aGATTAGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGATTAGTTGACTGTCAAATATTCATATATATGACAAAGGAATTTATCATAGAAAAAAAAGGAATAGTTG‑AAAATCCAtttatt                     >  2:2036585/1‑128 (MQ=255)
                                                                                                                      gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATATATGATAGAAAAAAATGGATTAGTTG‑ATAATCCTTATTTTa                    >  1:1511062/1‑128 (MQ=255)
                                                                                                                      gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTa                    >  2:2411738/1‑128 (MQ=255)
                                                                                                                       aTTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATTAGTTG‑ATAATCCATTTTTTaa                   >  1:1465601/1‑128 (MQ=255)
                                                                                                                       aTTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAATATGTTAGTTGAGGTTAAAATTATGATTTAAATTAAAAAAGTATTTATTATTTAAAAAAATTGAATAATTGAATAATAAATTTTTTat                   >  1:554435/1‑127 (MQ=255)
                                                                                                                        tttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTAAt                  >  2:1082223/1‑128 (MQ=255)
                                                                                                                         tttgATAAATCAAATATATATCTAAAAAATTATAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTTGTTG‑ATAATCCATTTTTTAAtt                 <  2:1729040/125‑1 (MQ=255)
                                                                                                                          tGGATCAACCAAAACTATATCAAAAAAATTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCTTAAATAGTACAAAGGAATTTATGATAGAATAAAATGGATTAGTTG‑ATAATCCATTTTTTAAttt                >  1:1297090/1‑128 (MQ=255)
                                                                                                                          tGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTa                    >  2:156408/1‑124 (MQ=255)
                                                                                                                           ggATGAAACAAAACTATATCAAAAAAATTAAAAAAAAAAGTTTAGGTGAGATTCAAATCTGCATATATAGTACAAATGAATTTATGATAGAAAAAAATGGAGTATTTG‑ATAATCCATTTTTTAAtttt               <  1:1261675/128‑1 (MQ=255)
                                                                                                                             aTCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTAATTTTGt             >  2:764735/1‑128 (MQ=255)
                                                                                                                              tCAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATTAGTTG‑ATAATCAATTTTTTAATtttttt            >  2:1106631/1‑128 (MQ=255)
                                                                                                                               tatacAAAAATATATCAAAATATTTAAAATATATAGTTTATTTGATTTTCAAATATGCATTTATATTACTAAGGAATTTATGATATAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTAATTTTGttt           <  1:2381646/124‑1 (MQ=255)
                                                                                                                               cAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAg                                                                                              <  1:1678705/46‑1 (MQ=255)
                                                                                                                               cAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAg                                                                                              >  2:1670288/1‑46 (MQ=255)
                                                                                                                               cAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTAATTTTGttt           <  2:2156509/128‑1 (MQ=255)
                                                                                                                                aaacAAAAATATATAAAAATTATTAATATATATAGTTTAGTTGAGTTTTAAATCTGAATATATAGTACAAATGAATTTATGATATAAAAAAATGGATTTGTTG‑ATAATCCATTTTTTAATTTTGttaa          <  1:499384/125‑3 (MQ=255)
                                                                                                                                 aCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAACAAAATGGAGTAGGTG‑ATAATCCATTTTTTAAAGTAGTttat         >  1:2326812/1‑128 (MQ=255)
                                                                                                                                  ccAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTAATTTTGTttatt        <  2:1984780/128‑1 (MQ=255)
                                                                                                                                     aaaCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTAATTTTGTTTATTaaa     >  1:1155802/1‑128 (MQ=255)
                                                                                                                                     aaaCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTAATTTTGTTTATTaaa     >  2:323063/1‑128 (MQ=255)
                                                                                                                                        |                                                                                                                                
TAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑TTG‑‑TTTTTTT‑‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTG‑ATAATCCATTTTTTAATTTTGTTTATTAAATTA  >  CP016816/203819‑204073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑