| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP016816 | 19,719 | (A)9→8 | intergenic (‑440/‑697) | JCVSYN2_00065 ← / → JCVSYN2_00070 | hypothetical protein/tetracycline resistance ribosomal protection protein Tet(M) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 19,711 | 0 | A | . | 98.4% | 7272.7 / 116.5 | 1765 | intergenic (‑432/‑705) | JCVSYN2_00065/JCVSYN2_00070 | hypothetical protein/tetracycline resistance ribosomal protection protein Tet(M) |
| Reads supporting (aligned to +/- strand): ref base A (16/12); new base . (825/889); total (848/917) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1898 total aligned reads displayed.
TTACACGCGCCTCGTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAGAAAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTAACGATAAGTAAAATGTAAAAT > CP016816/19584‑19834 | cacGCGCCTCGTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTATAAGAGTTAAGGGATGATGaaaa > 2:2820191/1‑128 (MQ=255) cacGCGCCTCGTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAGaaaa > 2:2709813/1‑128 (MQ=255) acGCGCCTCGTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAGaaaaa < 1:2241461/128‑1 (MQ=255) ccTCGTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAATGTAGAAGAGTTACGGAATGAAGAAAAaataat > 2:2070731/1‑128 (MQ=255) tCGTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGTTTTTATAAAGTAAATAAAGAAGGTAGAAGAGTTACTGAATGATGaaaaaacataaa > 2:948444/1‑122 (MQ=255) gTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGCAG‑AAAAAAAATAAACa > 1:4415394/1‑128 (MQ=255) gTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACa > 2:4637268/1‑128 (MQ=255) gTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACa > 2:2149786/1‑128 (MQ=255) gTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGAAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACa < 2:1338629/128‑1 (MQ=255) aTCTTTTAATGATGGAATAATTGGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACaaa < 1:802702/128‑1 (MQ=255) cTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAgg < 2:2313352/128‑1 (MQ=255) ttttAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAgtt > 2:1493515/1‑126 (MQ=255) ttttAATGATCGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGt < 1:3178703/128‑1 (MQ=255) ttAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAATAAGGTAGAAGAGTTAAGGAATGAAG‑AAAAAAAATAAACaaattttt > 2:3386266/1‑123 (MQ=255) ttAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGttt > 1:474698/1‑128 (MQ=255) ttAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTATAGAAAGTAAATAAAGAAGGTAGATGAGTTACTGAATGAAG‑AAAAAAAATAAACAAAGGttt > 2:2252673/1‑128 (MQ=255) atgatgGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTaaa > 1:1621274/1‑128 (MQ=255) tgctgGAATAATTTGGGAATTTACTCAGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTaaaa < 1:552568/125‑1 (MQ=255) atgGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTaaaaaa < 1:3959530/128‑1 (MQ=255) tgGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAATAAATAAACAAAGCTTTAAAAAAt > 1:1212763/1‑128 (MQ=255) ggAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAAtt < 2:4062050/128‑1 (MQ=255) gAATACTTTGGGAATATACTCTGGGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAAttt < 2:861859/128‑1 (MQ=255) gAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACa < 2:755088/112‑1 (MQ=255) gAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTaaaaaa > 2:3172495/1‑125 (MQ=255) aataatTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATATAAAAAGGTTTAAAAAATTTc > 1:3101850/1‑128 (MQ=255) ataatTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTca < 2:1425787/128‑1 (MQ=255) taatTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTcaa < 2:1765535/128‑1 (MQ=255) taatTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTAACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTcaa > 1:2884186/1‑128 (MQ=255) atTTGTGAATTTACTCTGTTTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTcaaca < 2:4177512/128‑1 (MQ=255) atTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTcaaca < 2:4442869/128‑1 (MQ=255) agttGTGAATTTTCTCTGTCTGTATTTATTTTTATGTGTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTATAAAAAATTTcaaca < 1:1115929/126‑1 (MQ=255) tttGTGAATTTCCTCTGTGTTTATTTATTTTTATGATTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTcaacaa < 1:1974597/128‑1 (MQ=255) tttGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTcaacaa < 2:2529349/128‑1 (MQ=255) ttGGGAATTAACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACaaa < 1:4574397/128‑1 (MQ=255) tGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACaaaa < 1:1845624/128‑1 (MQ=255) gggAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAGAAAAAAAAATAAACAAAGGTTTAAAAAATTTCAACaaaa > 1:3340946/1‑128 (MQ=255) aaattACTCTTTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCg < 2:3973054/125‑1 (MQ=255) aTTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGt > 1:3486325/1‑128 (MQ=255) tttACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTa > 2:3828117/1‑128 (MQ=255) ttACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAATAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTAc > 1:3401223/1‑128 (MQ=255) ttACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAATAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTAc > 2:1980772/1‑128 (MQ=255) ttACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTAc < 2:4326452/128‑1 (MQ=255) tACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTAcg > 1:1059657/1‑127 (MQ=255) tACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACt < 1:3649028/128‑1 (MQ=255) tACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACt < 2:1578459/128‑1 (MQ=255) ctctGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACttt < 1:151565/128‑1 (MQ=255) tctGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTa < 1:1377604/128‑1 (MQ=255) tctGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTa < 1:245210/128‑1 (MQ=255) ctGTGTTGATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTAc < 2:191403/128‑1 (MQ=255) gtgtTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACat < 2:3111732/128‑1 (MQ=255) tgtTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTTCGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAATAGCGTACTATACata > 1:1670611/1‑128 (MQ=255) tatttattTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACatatata > 2:3577751/1‑128 (MQ=255) tttatttTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGATTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATAtatt > 2:3885052/1‑128 (MQ=255) tttttATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATAtatttatt < 1:4151093/128‑1 (MQ=255) tttATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAg < 1:4073757/128‑1 (MQ=255) ttATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAGAAAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAg < 1:4334939/128‑1 (MQ=255) gTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTGCGGAATTAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAg < 2:1707486/128‑1 (MQ=255) tttGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAATTAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGaa < 1:3719836/128‑1 (MQ=255) ttGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGaaa > 2:1256265/1‑128 (MQ=255) tGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACatat < 2:3039906/108‑1 (MQ=255) tGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGaaaa < 1:3805002/128‑1 (MQ=255) tGTATATGGATTTTAGAAAGTAAATAACGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGaaaa < 1:913322/128‑1 (MQ=255) ttGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAg < 2:3265650/119‑1 (MQ=255) ttGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGa < 2:3732493/128‑1 (MQ=255) tGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACTGAATTAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCTAACTTTACATATATATTTATTAGACAAGAAAAGCAGAt > 2:1160463/1‑128 (MQ=255) gATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTa < 1:2812444/128‑1 (MQ=255) gATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAG‑AGATTaa < 2:333082/128‑1 (MQ=255) tttAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGTTTTAAAAAATATCACGAAAAAGCGTACTTTCCATATATATTGAGTAGACCAGACTAGCAGATTaatt > 2:290072/1‑126 (MQ=255) tttAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATTTATATTTAGTTGACTAGAATAGCTGATTaata > 1:2131101/1‑126 (MQ=255) tttAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAAt < 1:1276243/128‑1 (MQ=255) tAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAg < 1:3252196/128‑1 (MQ=255) tAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAg < 1:1916156/128‑1 (MQ=255) tAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAg > 2:4544614/1‑128 (MQ=255) gAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGat < 2:3502376/128‑1 (MQ=255) gAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGat < 2:546241/128‑1 (MQ=255) gAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGat < 1:251496/128‑1 (MQ=255) gAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGat < 2:164897/128‑1 (MQ=255) gTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTTTTAGACAAGAAAAGCAGATTAAATAGATATAc > 1:635491/1‑128 (MQ=255) gTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAg > 1:2365376/1‑110 (MQ=255) aaataaaGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCATCAACAAGCGTCCTGGACCTATTAAGTAATTATCCAAGAAACGCACATTAAATAGatattcct > 1:2992746/1‑124 (MQ=255) ataaaGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTc < 1:3868552/128‑1 (MQ=255) taaaGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGAAAAGAAAACCAGATTAATTAGAAATAAATTCg > 1:2622915/1‑128 (MQ=255) taagaagTTAGAAGAGTTACTGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGa < 2:1066201/127‑1 (MQ=255) atagaagCTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAATGGTTTAAATAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGa < 1:719281/126‑1 (MQ=255) aaaGAAGGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGa < 2:239482/128‑1 (MQ=255) aagaagGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTATACAAGAAAAGCAGATTAAATAGATATACATTCGAt > 2:3681753/1‑128 (MQ=255) agaagTTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAATAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGAtt < 2:64276/128‑1 (MQ=255) agaagGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAATGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGCTTAATGAGAGAGACCTTCgtgt > 1:993902/1‑125 (MQ=255) gaagGTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTa < 1:2732422/128‑1 (MQ=255) gTAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACTTTCGATTAACGa > 2:2451271/1‑128 (MQ=255) tAGAAGAGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTAACGa < 1:1761594/127‑1 (MQ=255) agaagaGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACTTTCGATTAGCGaga > 1:1001628/1‑126 (MQ=255) gaagaGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTAACGATaa < 1:1446733/128‑1 (MQ=255) aagaGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAACAAGCGTACTTTACATATATATTTATTAGACAAGAAAATCAGATTAATTAGATATACATTCGATGACCGATTAg > 1:2061254/1‑128 (MQ=255) aagaGTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTAACGATAAg < 2:1813667/128‑1 (MQ=255) gagTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTAACGATAAgta > 1:4224821/1‑128 (MQ=255) agTTACGGAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTAACGATAAgtaa < 1:4023659/128‑1 (MQ=255) ggAATGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTAACGATaa > 1:3583233/1‑118 (MQ=255) aaTGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTAACGATAAgtaaaatgtaaa < 2:4225321/128‑1 (MQ=255) tGAAG‑AAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTAACGATAAgtaaaatgtaaaat < 2:2608731/128‑1 (MQ=255) | TTACACGCGCCTCGTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTTTATTTATTTTTATGTTTTGTATTTGGATTTTAGAAAGTAAATAAAGAAGGTAGAAGAGTTACGGAATGAAGAAAAAAAAATAAACAAAGGTTTAAAAAATTTCAACAAAAAGCGTACTTTACATATATATTTATTAGACAAGAAAAGCAGATTAAATAGATATACATTCGATTAACGATAAGTAAAATGTAAAAT > CP016816/19584‑19834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |