New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 203895481 (0.260)273 (0.130)
+TTT		 76/214 24.6 33.7% intergenic (+279/+179) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
?CP016816 203896 = 547 (0.260)intergenic (+280/+178) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 893 total aligned reads displayed.

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAA  >  CP016816/203769‑204024
                                                                                                                                     |                                                                                                                                
  aaTTTTTTTTATAAAAAAAAATAAAAATTTTTAATTTAAAGACTTTTGTAAAATATCCTATTTTTTATGCTTTTTATTATACTTTTAAAAATTACAACGCTTTCAAAGTTTATTTTTTAT‑GC‑‑TTG‑‑‑ttt                                                                                                                                <  1:1729049/128‑1 (MQ=255)
   aTTTTTTTAAAAAAAAAAAATAAAAATTTTTCATTTAAATCAATTTGTAAAAAATCCAATGTTCATGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑tttt                                                                                                                               <  2:2884928/128‑1 (MQ=255)
     tttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑tttttt                                                                                                                             >  1:753255/1‑128 (MQ=255)
      ttttttATAAAAAAAAATAAAAATTTTTTATTTTAATTAATTTTTAAAAAATCATATTTTTTATTTTTTTTATTATAATTATAAAAATTAAAAATCTTTTAAATTTTATTTTTTAT‑GC‑‑ttt‑‑‑ttttttt                                                                                                                            <  1:1820729/128‑1 (MQ=255)
      ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑ttttttt                                                                                                                            <  2:3449666/128‑1 (MQ=255)
       tttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑tttttttt                                                                                                                           >  2:2194786/1‑128 (MQ=255)
        ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCTTTTGTAAAAATGCCTTTGTTCTATGCTTTTTATTATAGTTATCAAAATTACAACGCTTTCAAAGTGTTTTTTTTAG‑GA‑‑TTG‑‑‑ttttttttt                                                                                                                          >  2:1790574/1‑128 (MQ=255)
        ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAT‑GC‑‑TTG‑‑‑ttttttttt                                                                                                                          >  2:3431529/1‑128 (MQ=255)
         tttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAACCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑GTG‑‑‑tttttttttt                                                                                                                         <  2:2125513/128‑1 (MQ=255)
            ataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGGCTTTTTATTATAATTATCAACATTAAAACCCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑ttttttttttttt                                                                                                                      <  2:4074757/128‑1 (MQ=255)
             taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑tttttttttttttt                                                                                                                     >  1:4334337/1‑128 (MQ=255)
             taAAAAAAAAAAAAAATTTTTCATTTAAAGCCATTTTTAAAAAATCCTATTTTATAGGATTTTTATTATAATTATCAAAATTAAAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑tttttttttttttt                                                                                                                     <  2:4623799/128‑1 (MQ=255)
              aaaaaaaaaTAAAAATTTTTCATTTACAGCCATATGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑GTG‑‑‑ttttttttttttttt                                                                                                                    <  2:1302340/128‑1 (MQ=255)
                aaaaaaaTAAAAATTTTTCATTTAAAGCAATTTGTAAAAACCCCTATGTTATAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTTTATTTTTTCG‑GC‑‑TTG‑‑‑ttttttttttttttgta                                                                                                                  <  1:3655677/128‑4 (MQ=255)
                  aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑ttttttttttttttttttt                                                                                                                >  2:1174552/1‑125 (MQ=255)
                  aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTATCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑ttttttttttttttttttt                                                                                                                >  2:3886894/1‑125 (MQ=255)
                    aatttaaaatTTTTAATTTTAATATATTTTTAAAAAATCATATTTTTTTTTTTTTTTTTTTTAATTTTCAAAATTAAAACGCTTTTAAATTTTTTTTTTTTT‑GC‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTaaa                                                                                                              <  1:2087214/123‑1 (MQ=255)
                     aataaaaaaTTTTCATTTTATCCAATTTTTAAAAAAGCTTTTTTTATATGTTTTTTTTTATAATTATAAAAATTAAAATCTTTTCAAATTTTTTTTTTTAG‑GT‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTaaa                                                                                                              <  1:1434800/128‑1 (MQ=255)
                       taaaattTTTTAAATTAAACAAATTTTTAAAAATTCTTATTTTTTTTGATTTTTTTTAAACTTATCAAAATTAAACCCATTTAAAATTTTATTTTTTTT‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTaaaaa                                                                                                            <  2:1230275/128‑1 (MQ=255)
                       taaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑tttttttttttttttttgatatag                                                                                                           >  2:667288/1‑120 (MQ=255)
                       taaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑tatttttttttttttttagtaaaa                                                                                                           >  2:2555820/1‑120 (MQ=255)
                          aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑ttttttttttttttttttttaaaaata                                                                                                        >  1:1598376/1‑117 (MQ=255)
                          aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTTTAAAATtaa                                                                                                        >  2:1398851/1‑128 (MQ=255)
                           aatTTTTTATTTAAATCCAATTTTAAAAATACATATCTTAATCGATTTTAATTATAATTATAAAAATAAAAACTCTTTAAAATTTTATTTTTTAT‑GCT‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATaaa                                                                                                        <  1:472497/128‑1 (MQ=255)
                           aatTTTTATTTTAAATAAATTTTTAAAAAATAATATTTTATATTTTTTTTTTTTTAATTATCAAAATTAAAAAGATTTAAAATTTTATTTTTTAT‑GCTTTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATaa                                                                                                         <  2:2513184/128‑1 (MQ=255)
                           aatTTTTAATTTAAATCAATTTGTAAAAAATCATATGTTATAGGCTTTTTATTATAATTATAAAAATTACAACGCTTTAAAAGTGTATTTTTTAT‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATaaa                                                                                                        <  2:1707289/128‑1 (MQ=255)
                             tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTATAAATAAAAg                                                                                                      >  2:4275523/1‑128 (MQ=255)
                               tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTTTAAAAATaaaatt                                                                                                     >  1:1159958/1‑126 (MQ=255)
                                  catttaataactttttTAAAAAAGACTATGTTCTAGGCTTTTTATTATACATATCAAAATTACAACGCTTTAAAAGTGTTTTTTTTTG‑GG‑‑TTGTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAg                                                                                                  <  1:3609432/116‑1 (MQ=255)
                                    tttAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAatat                                                                                                >  2:4122028/1‑128 (MQ=255)
                                      tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTTTTTTTTTTTTTTTTTTTGTTAAAATAAAAGTAAGAtt                                                                                               >  2:3649820/1‑128 (MQ=255)
                                      tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTATGATTTg                                                                                             >  2:3735038/1‑128 (MQ=255)
                                      tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTTTAaaaaaaaaagattcatttg                                                                                            >  1:2308394/1‑117 (MQ=255)
                                       aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTTTAAAATTAAAAGTAATATTTg                                                                                             >  1:1536767/1‑128 (MQ=255)
                                          accATTTGTAAAAAACCATATTTTCATATTATTTTATTAAACTTATAAAAATAAAAACTCTTTCTAATTGTTTTTTTTTT‑TC‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCa                                                                                        <  1:1101355/127‑1 (MQ=255)
                                                 ttAAAAAATCTTATTTTTTTTGATTTTTTTTATAATTATCAACATTAAAACTCTTTAAAATTTTATTTTTTTT‑GC‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                                 <  1:2236383/127‑1 (MQ=255)
                                                 gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTTTTTTTTTTTTTTTTTTTGTAAAAATAAAAGTAatatattcaaaaaaca                                                                                    >  2:3277701/1‑116 (MQ=255)
                                                 gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTGTCAAAGTGTATTTTTTAG‑TC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATATAATTAAAAATTGTATAAACaaaa                                                                                  >  2:419457/1‑128 (MQ=255)
                                                  tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGGATAAACCaaaa                                                                                 >  2:3510324/1‑128 (MQ=255)
                                                     aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATATGGATAAACCAAAACta                                                                              >  2:3952834/1‑128 (MQ=255)
                                                     aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTGTTTTTTTTTTAAAATAAAAAGTAAGATTTGGAAAAAACAAAACtat                                                                             >  1:3458591/1‑128 (MQ=255)
                                                         gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTATAAAAAAAAAAGTAAGATATGGCTCAACCAAAACTatat                                                                           >  1:3006749/1‑128 (MQ=255)
                                                          gttttgttgtATGTTTTTTATTTTAATTTTTATGATTTCATCTGTTTTAAATTGTATTTTTTTT‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCa                                                                         <  2:4448785/124‑1 (MQ=255)
                                                           cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAT‑GC‑‑TTG‑‑‑TTATTTTTTTTTTTTTGAATAAAAAAAAGTTAGATTTTGATAAACAAAAAATATATCaaa                                                                       >  2:4390184/1‑128 (MQ=255)
                                                           cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGAATAAACAAAAACtatttaa                                                                         >  2:609121/1‑124 (MQ=255)
                                                            tatttttttttttttttATTATATTTTACAAAATTAAAACTATTTAAAATTTTATTTTTTAGTTT‑‑TTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                       <  1:3697979/116‑1 (MQ=255)
                                                            tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAAGTAATATTTGTGTAAACCaaaaaattataaaa                                                                       >  1:860642/1‑118 (MQ=255)
                                                            tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAATGTAAGTTTTGGATAAACCAAAAatattaaaaa                                                                       >  2:849933/1‑122 (MQ=255)
                                                               aacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTT‑‑TAAAAATAAAATTAAGATTTGTTTCAACCAAAACTAAATaaaaaaaaat                                                                 >  1:1008672/5‑126 (MQ=255)
                                                                 tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑AAAATAAAAGTAAGATTTGGATAAAACCAAAATAATTAAAAAAAATTa                                                                >  2:145695/1‑128 (MQ=255)
                                                                 catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATTAAATTAATATTTGGAAAAACCAAAAATATATAAAAAAAAt                                                                  >  1:25196/3‑128 (MQ=255)
                                                                  ttttgttttttATTTTAATTTTCAAAATTACAACGCTTTGAAATTGTTTTTTTTTT‑GG‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAtt                                                                 <  1:4447583/122‑1 (MQ=255)
                                                                  attggtttttttttATAATTTTAAAAATTAAAAATCTTTAAAATTTTTTTTTTTTT‑GG‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTa                                                                <  1:1231814/122‑1 (MQ=255)
                                                                  atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTTAAAATTAAAATTAGAATTTGGTAAACCAAAACATAATaaaaaaaaat                                                                 >  1:4106201/2‑126 (MQ=255)
                                                                   tagtttttttATTTTATTTTTTAATATTTAAAAGTTTTTAATTTGTATTTTTTTT‑GG‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTa                                                                <  1:4232222/123‑1 (MQ=255)
                                                                    aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTATGATTTGTTTGAACCAAAAATAATTCAAAAAAATaaa                                                               >  2:4335134/1‑128 (MQ=255)
                                                                        tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTTTAAAAATTAAATTAAAATTTTGATAAACAAAAAATATAAAAAAAAAATTaaaaa                                                            >  2:4558785/1‑128 (MQ=255)
                                                                            tattatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTATGATTTGAATAAACCAAAAATAAATACAAAAATTTAAAaataatt                                                       >  1:3572286/1‑127 (MQ=255)
                                                                              ttattattATAAAAATTAAAACGCTTTAAAATTGTATTTTTTTT‑GT‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagt                                                     <  2:3844729/122‑1 (MQ=255)
                                                                              ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATAAAAATATGGAAACACAAAAAATATAAAATAAAAATTaaaaaaaaaatt                                                     >  1:920791/1‑124 (MQ=255)
                                                                              ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAAATTTTTTAAAAACAAAAAATataaaaaaaaaataaaaaaaaaatat                                                     >  2:756993/1‑124 (MQ=255)
                                                                                ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTTAAAAATAAATTAAGATTTTGATAAACCAAAACTTAATAAAAAAAATTAAAAAAAGtatttt                                                   >  1:2621946/1‑128 (MQ=255)
                                                                                  aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATATTTTGTAAAAACAAAAAATTttaaaaaaaattaaaaaaaaatttttatt                                                >  2:1021280/1‑119 (MQ=255)
                                                                                   ctttatataaTTAAAACGCCTTCAATTTGTTTTTTTTAT‑TG‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagt                                                <  1:2405013/119‑1 (MQ=255)
                                                                                   attATAAACATTACAAAGCTTTAATAGTTTATTTTTTAG‑GT‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                               <  2:493060/127‑1 (MQ=255)
                                                                                    ttaaaaaCATTACAACCCTTTAAAAGTGTTTTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                               <  1:3893607/123‑1 (MQ=255)
                                                                                    ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTATTTTTTTTTTTTTTAAAAAAAAAAATTAAAATTTGATTAACAAAAAaaataaaaaaaaaaataaaaaaaaaaatattcttt                                              >  2:929750/1‑117 (MQ=255)
                                                                                    ttATAAAAATTACAACTATTTTAAATTGTATTTTTTAT‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTg                                              <  2:380143/128‑1 (MQ=255)
                                                                                      aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTTGATAAAAAAAAAATAAAAAAAAAAAATTAAAAAAAAaattttattt                                               >  2:20110/1‑128 (MQ=255)
                                                                                        cAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTGTATCAACCAAAACTTTATAAAAAAAATTAAAAAAAAAATTTTTGTTGAGtt                                          >  1:3139510/1‑128 (MQ=255)
                                                                                          aCATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATAAACCAAAAATATATAAAAAAAAATAAAAAAAATATTTTATTTTAGtt                                          >  2:3570806/1‑128 (MQ=255)
                                                                                           cATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTTTATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCa                                       >  2:4017907/1‑128 (MQ=255)
                                                                                            aTTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTGTTAAAATAAAAGTAATATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTaaaa                                     >  1:607060/1‑128 (MQ=255)
                                                                                            aTTACAACGCTTTAAAATTGTATTTTTTTT‑GCTTTTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTc                                        <  1:3926997/128‑1 (MQ=255)
                                                                                             ttACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAAATTTTGATAAACCAAAACAATAAAAAAAAAATTAAAAAAAATATTTTATTTgtttttaaa                                      >  1:1350211/1‑120 (MQ=255)
                                                                                               aCAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATTTTTGGATCAACCAAAAAAAAAAAAAAAAAAATAAAAAAAATATTTTATTTGATTTTAAAAt                                    >  2:2331416/1‑128 (MQ=255)
                                                                                                cAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTTGTAAAACAAAAACTATTTAAAAAAAATTAAAAAAAATATTTTATTTTAGTTTAAAAt                                    >  2:3991580/1‑128 (MQ=255)
                                                                                                cAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAATAAGATTTTTGTCAAACAAAAGTATTTAAAAAAAATTAAAATAATTATTTTATTTGAtttaaaaaaa                                   >  2:550860/1‑121 (MQ=255)
                                                                                                 aaCGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGTATAAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAAtat                                  >  2:1626962/1‑126 (MQ=255)
                                                                                                    gCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTGGATAAACCAAAACTATATAAAAAAAATTAAAAAAAATAATTTATTTGAGTTTaaaaagggaa                               >  1:200491/1‑122 (MQ=255)
                                                                                                       ttCAAAGTGTATTTTTTAG‑GC‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTTGATAAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTTATTTATTTTCAAATATTCat                              >  1:4578861/1‑128 (MQ=255)
                                                                                                       ttCAAAGTGTATTTTTTAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATTTTTGGGTCAACCAAAACTATAAAAAAAAAATTAAAAAAAATAGTTTATTTGATTTTCaaaagagcata                             >  1:3839999/1‑120 (MQ=255)
                                                                                                       ttCAAAGTGTATTTTTTAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATATTTTGAAAAACCAAAACTATTAAAAAAAAATTAAAAAAAAAATTTTAGTTTAGATTAAAAttagaaat                             >  2:3042068/1‑121 (MQ=255)
                                                                                                        tCAAAGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAATTAATATTTGGTAAAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTATTTGAGTTTCAAATCTGCatata                           >  2:1521868/1‑128 (MQ=255)
                                                                                                          aaaGTGTATTTTTTAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTTGATCAACCAAAAAAAAATCAAAAAAATTAAAAAAAAAATTTTAAGTAAGTTACAAATATAAAtatata                         >  1:536996/1‑128 (MQ=255)
                                                                                                              tgtATTTTTTAG‑GC‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAAATAATATTTGTAAAAAACAAAAATATTTAAAAAAAATTAAAAAAAAAATTTAATTTTATTTAAAAATCTTAAtatatatt                       >  2:2782715/1‑126 (MQ=255)
                                                                                                               gtATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGTTTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTATTTGAGTTTAAAATATGCAAATATATTACaa                   >  2:2655756/1‑128 (MQ=255)
                                                                                                                  ttttttAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGGTTAAACCAAAACTATTTAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATTCATATTTATTTCAAAg                 >  2:1112101/1‑128 (MQ=255)
                                                                                                                  ttttttAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGGATAAACCAAAACTTTTTCAAAAAAATTAAAAAAAATAGTTTATTTGAGTTTAAAATCTGCATATATATTAaaaat                 >  2:3141784/1‑127 (MQ=255)
                                                                                                                      ttAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAAATATTTAAAAAAAATTAAAAAAAATATTTTATTTGATTTTCAAAACTGCATTTATATTTAAAAGGAAt             >  2:2965402/1‑128 (MQ=255)
                                                                                                                      ttAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAAATAAAAAAATTAGTTTATTTGAGTATCAAATGAGAAAATATAGTaataagtattt            >  2:1908740/1‑118 (MQ=255)
                                                                                                                       tAG‑GC‑‑TTGTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAACTAAGATTTGGAACAACCAAAAAAAATAAAAAAAAATTAAAAAAAATAGTTTTGTTTAGTATCAAAAAAGAATATTTACGACAAAGGatt             >  1:402964/1‑126 (MQ=255)
                                                                                                                       tAG‑GC‑‑TTGT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAGTAAGATTTGGAAAAACCAAAAATAATAAAAAAAAATTAAAAAAAATATTTATGTTTAGTTTAAAAAATGCATATATAGTAAAAAGAAAtt            >  2:2701022/1‑128 (MQ=255)
                                                                                                                             ttgtttttttttttttttttttttGTAAAAATAAAAGTAAGATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt           <  2:2433429/120‑1 (MQ=255)
                                                                                                                              tggttgtttttttttttttttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa          <  1:3972320/121‑1 (MQ=255)
                                                                                                                              tcttgttttttttttttttttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa          <  1:4294879/121‑1 (MQ=255)
                                                                                                                               gtttgtttttttttttttttttGTAAAAATAAAAGTAAGATTTGTATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt         <  1:4170555/122‑1 (MQ=255)
                                                                                                                                 ttttttttttttttttttttGTAATATTTAAAGTAAGTTTTGGTTAAACTAAAAATATTTAAAAAAAATTAAATAAAATAGTTTAGTTTAGTTTCAAATCTTAATATATAGTACAAAGGAATTTATGa       <  1:3302209/124‑1 (MQ=255)
                                                                                                                                  tttttttttttttttttttGTAATAATAATAGTAAGATTTGGATCAACCAAAACTATATCATAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt      <  2:3606168/125‑1 (MQ=255)
                                                                                                                                    tttttttttttttttttttAAAAATATAAGTAAGATTTGTATAAATAAAAACTATATCAATAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg    <  1:2790045/127‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                
TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAA  >  CP016816/203769‑204024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.