Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT56.3% 9.1 / 310.8 382intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (41/126);  new base T (85/130);  total (126/256)
Fisher's exact test for biased strand distribution p-value = 2.14e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.39e-04

Only 100 of 447 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGC  >  CP016816/202370‑202620
                                                                                                                                |                                                                                                                                 
aaaaaaactttATGGTTTATTAAAATCACATTAAATTATAAATTATTATAATGTAGATCCTGGTGATCTTTTTTTTTAT‑TTGTTTATCATAAA‑AAAT‑AAAAAAAAAACAAACCCC‑‑Ttaaaa‑att‑aaaa                                                                                                                             <  1:1046349/119‑1 (MQ=255)
  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCC‑‑AAtaaaa‑aat‑aaaaaa                                                                                                                           >  2:4222208/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTAT‑TTGTTTATATTCAC‑AAAA‑AAAAAAAAAAAAATAAC‑‑‑ATAAAA‑AAT‑aaaaaaaaa                                                                                                                        >  1:283693/1‑128 (MQ=255)
       agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaa                                                                                                                      >  1:3670262/1‑128 (MQ=255)
        gTTAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAATAAAAAAAAAAACAATCCC‑‑‑AAAAAA‑AAT‑aaaaaaaaaaaa                                                                                                                     >  1:3107526/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCAAC‑‑‑TAAAA‑AAT‑taaaaaaaaaaaa‑‑a                                                                                                                 >  1:1288826/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTAGTGATCTATTTTTATAT‑ATTTTTATATTCAC‑AAAT‑AAAAAAAAAACAAT‑‑AAAATTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aa                                                                                                                >  1:1697743/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTTTTTATCTTCAC‑AAAT‑AAAAAAAAAAACAAACCAAAT‑‑AAA‑AAT‑aaaaaaaaaaaaa‑‑aa                                                                                                                >  2:4114121/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aa                                                                                                                >  1:3933503/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aa                                                                                                                >  2:3744694/1‑128 (MQ=255)
            agtttaatttaAAAACAATAAAAATAATAATTTTTATTATTTTGATACTTTTTTAATATTTTTTTTT‑TTTTTTAAAATAAA‑AAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaa                                                                                                               <  1:4164608/125‑1 (MQ=255)
            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAA‑AAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑AAT‑aaaaaaaaaaaaa‑‑aaa                                                                                                               >  1:1014407/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTTTTTATATTCAC‑AAAT‑AAAAAAAAAACAAACCAC‑‑TAAAAA‑AAT‑aaaaaaaaaaaaa‑‑aaaa                                                                                                              >  1:2655650/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATACCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaa                                                                                                              >  1:3773843/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACACC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaa                                                                                                              >  1:4510811/1‑128 (MQ=255)
              tttaattaaAAAAAAATAAAATTAATAATTATTATAAATTATAATCTAGTTATCTATTTTTTTAT‑TTTTTTTTCTTAAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaa                                                                                                             <  2:3600772/127‑1 (MQ=255)
              tttaaataaAATACCATAAAATATAAAATTATTAAAAAGTTATTCCTCGTTTTCTATTTTTTTTT‑TTGTTTATATTAAA‑AAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaa                                                                                                             <  1:1477003/127‑1 (MQ=255)
              gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTTTTTATATTAAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaa                                                                                                             >  2:470120/1‑128 (MQ=255)
              gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaa                                                                                                             >  2:3982529/1‑128 (MQ=255)
              gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaa                                                                                                            >  2:3717520/1‑128 (MQ=255)
               ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTTTTTATATTCAC‑AAAT‑AAAAAAAAAAAAATAAAC‑‑‑TAAAA‑AAT‑taaaaaaaaaaaa‑‑aaaaaaa                                                                                                           >  1:42117/1‑128 (MQ=255)
               ttaattaaAAAAACAAAAAAATAATAAATATTATAAATTACATACTCTTGATCTAATTTTTTAT‑TTTTTTAAATTCAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaa                                                                                                            <  2:1910100/128‑1 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAT‑‑AAAATTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaaa                                                                                                           >  2:17293/1‑128 (MQ=255)
                taattaaAATACCATAAACTTAATAAATCTTATAATGTATATACTCTTGATCTATATTTTTAT‑TTGTTTATCTTAAC‑AAAT‑AAAAAAAAAAAAAAAAAATT‑‑‑AAA‑AAT‑aaaaaaaaaaaaa‑‑aaaaaaaa                                                                                                          >  2:2720797/1‑128 (MQ=255)
                taattaaAAAAAAATAAAATTAATAATTATTATAATTTAAATCCTCGTGATAAATTTTTTTAT‑TTGTTTATATTAAC‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaac                                                                                                           <  2:4493626/128‑2 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTAT‑TAGTTTATCATCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aataaaaaaaaaa‑‑aaaaaaaa                                                                                                          >  1:4034247/1‑128 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACACAATAAAAAT‑Aaa‑aaaaaaaaaaaaa‑‑aaaaaaa                                                                                                           >  1:2155504/1‑128 (MQ=255)
                     aaaaaaACATAAACTTAATAAAAATTAAAATTTAAAAACACTTCATCTATTTTTTTAT‑TTTTTTAAATTAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTaa                                                                                                      <  2:1353635/128‑1 (MQ=255)
                      aaataaaataAAATTAATAAATATTATAAATTATAAACTAGTTATAAATTTTTTTAT‑TTTTTTATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTaaa                                                                                                     <  2:1506681/128‑1 (MQ=255)
                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAATAAAAAAAAAAACAATCAC‑‑ATTAAAA‑ATT‑aaaaaaaaaaaaa‑‑aaaaaaaaaaaa                                                                                                      >  2:526045/1‑124 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAAACC‑‑ATTAAAA‑ATT‑Aaaaaaaaaaaaa‑‑aaaaaaaaaaaaaa                                                                                                    >  1:294470/1‑128 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTCATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑Aaaaaaaaaaaaa‑‑aaaaaaaaaaaaaa                                                                                                    >  1:3591128/1‑128 (MQ=255)
                        aaaataTAAAATTAATAATTATTATAATTTATATACTCGTTTTTTATTTTTTTTT‑TTTTTTATTTTAAA‑AAAT‑AAAAAAAAAACAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTaaaaa                                                                                                   <  2:3621234/123‑1 (MQ=255)
                        aaaacATAAAAATAATAATTATTTAAATTTTTATCCTCTTGATATATTTTTTTTT‑TTTTTTATATTCAC‑AAA‑‑AAAAAAAAAAAAAACCCCTTAAAAAATAAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTaaa                                                                                                     <  1:4137291/124‑1 (MQ=255)
                          tataaaaaaTTAATAATTCTTATAATTTATATAATAGTTTTATATTTTTTTTT‑TTTTTTTTATTAAA‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAaaaca                                                                                                 <  2:3283554/123‑1 (MQ=255)
                           aaaaaaaaTTAAAAATTTTTATAATTTTTATCATATTTTTATATTTTTTTTT‑TTTTTTTTATTCAA‑AAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAaaaca                                                                                                 <  1:1654674/124‑1 (MQ=255)
                                aaattAATAATTTATAAAATGTATATACTCCTGTAATAATTTTTTTT‑TTTTTTATATTAAA‑AAAA‑AAAAAAAAAACAATCCACTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTa                                                                                          <  2:4260752/125‑1 (MQ=255)
                                aaactaataaTTATTATAAATTTATTACTCTTTATTTATTTTTTTAT‑TTTTTTATCTTAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAActct                                                                                           <  2:2380103/124‑1 (MQ=255)
                                aaaataataaATATTATAATGTATATCCACCTGATATATTTTTTTAT‑TTTTTTATATTAAC‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTa                                                                                          <  2:4038178/124‑1 (MQ=255)
                                aaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAAATAAAAAAAAActaa                                                                                           >  1:3456454/1‑126 (MQ=255)
                                 aattAATAATTATTATAATTTATATAATATTGTTATATTTTTTTAT‑TTTTTTATATTAAA‑AAAA‑AAAAAAAAAACAAACCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTa                                                                                          <  2:1073690/126‑1 (MQ=255)
                                     tttaatTATTTTAATTTTTATCCTGTTGTTATATTTTTTTTT‑TTTTTTATATTTCA‑AAAT‑AAAAAAAAAAAAATCCCACTTAAAAA‑TATAAAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTAt                                                                                         <  1:2467065/126‑1 (MQ=255)
                                      ataaataatataATTTAGATCTTATTTATATATTTTTTTAA‑TTTTTTAAAATCAA‑AAAA‑AAAAAAAAAAAAAATCCC‑CTTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTc                                                                                      <  2:3782344/120‑1 (MQ=255)
                                          tttatataATTTATATACTCGTTATCTTATTTTTTAT‑TTGTTTATCTTAAC‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                               <  2:4139324/124‑1 (MQ=255)
                                               ataatttttatacTCGTTATTTATTTTTTTAT‑TTTTTTATCATAAA‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTccc                                                                           <  1:3868079/116‑1 (MQ=255)
                                                      ttaTCCTCGTGTTATTTTTTTTTAT‑TTTTTTAAATTAAC‑AAAA‑AAAAAAAAAAAAAAACCC‑ATAAAAA‑ATA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                                      <  2:579645/126‑1 (MQ=255)
                                                      atataatCGTTATATATTTTTTTAT‑TTTTTTAAATTAAA‑AAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                     <  2:1141826/122‑1 (MQ=255)
                                                        atcagatttatttATTTTTTTAT‑ATTTTTATAATAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑ATAAAAA‑ATA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                    <  2:2607028/116‑1 (MQ=255)
                                                        ataatatttatttatttttttat‑tttttTTTATTAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                   <  2:2479208/116‑1 (MQ=255)
                                                         tcaacgtttaatATTTTTTTAT‑TTGTTTATTATAAA‑AAAA‑AAAAAAAAAAAAAACCC‑‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  2:3907307/117‑1 (MQ=255)
                                                          ctctttttttatttttttaAT‑TTTTTTATATTAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  1:3625606/116‑1 (MQ=255)
                                                          cgtcggtttatttttttttAT‑TTGTTTATATTAAC‑AAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  1:581766/116‑1 (MQ=255)
                                                          catCGTTATATATTTTTTTTT‑TTTTTTATAATAAA‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                <  2:883503/126‑1 (MQ=255)
                                                          atttttatttattttttttat‑tt‑tttttatTAAA‑AAAA‑AAAAAAAAAAAAATACCCTTAAAAAT‑TAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                  <  2:4358255/116‑1 (MQ=255)
                                                          aatatttatatATTTTTTTTT‑TTTTTTATATTTAA‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  2:15791/118‑1 (MQ=255)
                                                            cgtttatatATTTTTTTAT‑ATTTATATCTAAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑AA‑‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                              <  1:983545/120‑1 (MQ=255)
                                                             tttttttattttttttAT‑TT‑TTTATATTAAA‑AAAA‑AAAAAAAAAAAAAT‑ACCATTTAAAA‑TAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                              <  2:1451069/119‑1 (MQ=255)
                                                              tttttaaatttttttat‑ttttttATATTAAA‑AAAA‑AAAAAAAAAAAAAAACCCTTAAAAAA‑TAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                               <  2:251996/121‑1 (MQ=255)
                                                               ttatatatttttttat‑tttttTATATTAAA‑AAAT‑AAAAAAAAAAAAATACCC‑TAAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                             <  2:4202325/123‑1 (MQ=255)
                                                               cttatttattttttATATTTTATATATTCTA‑AAAA‑AAAAAAAAAAAAAAACCCATT‑‑AAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                             <  1:460843/120‑1 (MQ=255)
                                                                 ttttATTTTTTTTT‑TTTTTTATATTAAA‑AAAT‑AAAAAAAAAAAAATCACCTTAAAAAT‑TAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                            <  2:2814305/125‑1 (MQ=255)
                                                                  tatatttttttat‑tttttTAAATTAAA‑AAAA‑AAAAAAAAAAAAAT‑ACCATTAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                          <  2:1785856/126‑1 (MQ=255)
                                                                    atttttttttt‑tttttTATATT‑AA‑AAAA‑ATAAAAAAAAAAAAAACCATTAAAAA‑TAT‑‑AAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                       <  1:380523/126‑1 (MQ=255)
                                                                    attttttttAT‑TT‑TTTATATTAAA‑AAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                     <  2:81244/126‑1 (MQ=255)
                                                                     tttttttttt‑tttttttttttAAA‑AAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                      <  1:3556797/127‑1 (MQ=255)
                                                                     ttttttttAT‑TT‑TTTATATTAAA‑AAAA‑AAAAAAAAAAAAATTCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                    <  2:41814/127‑1 (MQ=255)
                                                                      ttttttttt‑tTGTTTTTAGTAAA‑AAAT‑AATAAATAAACATATCCC‑‑TTAAAA‑TTT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                     <  2:2315927/128‑1 (MQ=255)
                                                                       ttttttat‑ttttttatTTAAAA‑AAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                    <  1:3486265/128‑1 (MQ=255)
                                                                        tttttAT‑TTTTTTATCATCACAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                    <  1:4248648/128‑1 (MQ=255)
                                                                        tttttAT‑TTTTTTATATTAAA‑AAAA‑AAAAAAAAAAAAA‑‑AACAATTAAAA‑ATA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                   <  1:3414657/128‑1 (MQ=255)
                                                                         tttttt‑ttttttATATTTA‑‑AAAA‑AAAAAAAAAAAAAAAAACATTAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                   <  2:454185/128‑1 (MQ=255)
                                                                          tttAT‑TTTTTAATTTAAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑‑‑TAAAA‑AAT‑‑AAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                               <  1:1739004/128‑1 (MQ=255)
                                                                            tAT‑TTTTTTATATTAAA‑AAAT‑AAAAAAAAAAAAATACC‑‑TTT‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                              <  2:3452202/128‑1 (MQ=255)
                                                                             tt‑tttttTATATTAAC‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                              <  1:4361674/127‑1 (MQ=255)
                                                                             aatatttttATCTTAAA‑AAAA‑AAAAAAAAAAAAATCCCATT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                              <  2:406753/122‑1 (MQ=255)
                                                                              aattGTTTATTTTAAC‑AAAT‑AAAAAAAAAAAAATTCC‑‑ATTAAAT‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                              <  2:212776/126‑1 (MQ=255)
                                                                               aatttttATATTAAA‑AAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                             <  2:319456/124‑1 (MQ=255)
                                                                                ttGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAAATAAAAAAAAACTATATTTATTAAAATTACCTTATATAAAAAATTTTTTTTTTAaaaaaata                                            >  2:2430266/1‑126 (MQ=255)
                                                                                       taaatataaaaa‑aaaaaaaaaaaaaaaaCCCATTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                        <  1:764708/120‑1 (MQ=255)
                                                                                       atattaaaaaaT‑AAAAAAAAAACAAACCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                       <  2:2010020/120‑1 (MQ=255)
                                                                                        atttttaaaaT‑AAAAAAAAAAAAAATTCCAATAAAAA‑TTA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                       <  1:518498/121‑1 (MQ=255)
                                                                                          ttaaaaaaT‑AAAAAAAAAACAATAACATT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                                  <  2:2228123/123‑1 (MQ=255)
                                                                                            taaaaaa‑aaaaaaaaaaaaaaACAATTAAAAAT‑AAA‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                                   <  2:1613993/125‑1 (MQ=255)
                                                                                            aaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                                 <  1:3999052/125‑1 (MQ=255)
                                                                                             aaaaaa‑aaaaaaaaaaaaATACCCATT‑‑AAA‑AAT‑‑‑‑AAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                             <  1:1076067/126‑1 (MQ=255)
                                                                                                    aaaaaaaaaaCAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAA‑‑AAAAAAAA‑TAAAAAAAAAATATATTTATAAAAATTAAAAATTAAACAACATTTTATATATAAAATAATATATAGAAATAaaataaatat                        >  2:3525778/1‑126 (MQ=255)
                                                                                                              aaaaatacccttAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                  <  2:3468078/118‑1 (MQ=255)
                                                                                                              aaaaataaccttaaaa‑att‑aaaaaAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                  <  1:3745101/118‑1 (MQ=255)
                                                                                                               aaataaactaataaa‑aaa‑aaaaaaaaaaaaa‑‑aaaaaaaACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                 <  2:1204963/116‑1 (MQ=255)
                                                                                                               aaaaatacaattaaa‑aat‑taaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                 <  1:2354556/116‑1 (MQ=255)
                                                                                                               aaaaaaacccttaaa‑aat‑taaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                 <  1:2310568/116‑1 (MQ=255)
                                                                                                                 aatacccttaaaa‑att‑aaaaaAAAAAAAA‑‑AAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat               <  1:3510617/121‑1 (MQ=255)
                                                                                                                 aaataaacttaaa‑aat‑taaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat               <  2:4418863/118‑1 (MQ=255)
                                                                                                                  atacaattAAAA‑AAT‑‑AAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa             <  2:1264015/122‑1 (MQ=255)
                                                                                                                  ataaaattaaaa‑att‑aaaaaAAAAAAAAATAAAAAAAACTAAAAACATACTCTATTTCTTAAAATTCACTATTATAACACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata                <  2:1641002/122‑1 (MQ=255)
                                                                                                                   attcaaataaa‑aat‑taaaaaAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa             <  2:3823536/120‑1 (MQ=255)
                                                                                                                     ccattaaaa‑attaaaaaAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat            <  1:4100015/125‑1 (MQ=255)
                                                                                                                        ttaaaa‑attaaaaaAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt         <  2:3861709/128‑1 (MQ=255)
                                                                                                                             a‑aaa‑aaaaaaaaaaaaa‑‑aaaaaaaACTAAAAACAAACTCTATTTCATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTg   <  1:4479035/128‑1 (MQ=255)
                                                                                                                               aat‑aaaaaaaaaataa‑‑aaaaaaAACTGAAATCAAACTCTATTTCTTAAAATTCAATATTATAACACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGc  <  2:2923851/128‑1 (MQ=255)
                                                                                                                                |                                                                                                                                 
ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAA‑‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGC  >  CP016816/202370‑202620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑