Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9520CA33.6% 1689.5 / 215.4 1091intergenic (+336/+122)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (308/393);  new base A (268/86);  total (587/504)
Fisher's exact test for biased strand distribution p-value = 2.88e-23
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1128 total aligned reads displayed.

GCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203826‑204079
                                                                                                                                   |                                                                                                                                
   tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAATTAATATTTTTATCAACA‑AAAACTATATaaa                                                                                                                                >  2:3610581/1‑128 (MQ=255)
      gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TT‑TTTTTTTTTTTTTGTAAAAATAAAATTAATATTTGGATAAACC‑AAAACAATATGAAAAAAAt                                                                                                                          >  2:4601727/1‑128 (MQ=255)
      aacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTT‑TTTTTTTTTTTT‑‑TAAAAATAAAATTAAGATTTGTTTCAACC‑AAAACTAAATaaaaaaaaat                                                                                                                         >  1:1008672/5‑126 (MQ=255)
        tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAATTAAATTTTTGTGCAACC‑AAAA‑TTTATTaaaaaaaat                                                                                                                         >  2:1894160/1‑126 (MQ=255)
            ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTTTTAAAATAAATTTAATATTTTGATAGACC‑AAAACTATATAAAAAAAATT‑aaa                                                                                                                     >  1:4611803/1‑128 (MQ=255)
                 tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTTTT‑TTTTTTTTTTTTTGTAAAAATAAAATTAATATTTGTATAAACC‑AAAAATATTTAAAAAAAATA‑aaaaaa                                                                                                                  >  1:1151102/1‑128 (MQ=255)
                 tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑TTT‑TTTTTTTTTTTTTTTAAAAATTAAAGTAATATTTGGATAAAAC‑AAAAATAATTAAAATAAATT‑taaaaaa                                                                                                                 >  2:1098892/1‑128 (MQ=255)
                   ttttatAAATATCAAAATTAAAAATCTTTAAAATTGTTTTTTTTATTTTTT‑‑‑TTT‑TTTTTTTTTTTTTGTAAAAATTAAATTTAGATTTGGTTCAAAC‑AAAACTATATCAAAAAATTT‑AAAAAAAAtag                                                                                                             <  1:1241513/126‑1 (MQ=255)
                   tattatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTGATAAAAA‑AAAAATTTAAAAAAAAAAAT‑AAAAAAtataa                                                                                                             >  2:3193947/1‑127 (MQ=255)
                          cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGGATCAACC‑AAAAATATATAAAAAAAATT‑AAAAAAAAtattttat                                                                                                        >  2:3811746/1‑127 (MQ=255)
                          attattaAAATTTCAAATCTTTTAAATTTTTTTTTTTAGTTTTT‑‑‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAAtagtttagtt                                                                                                      <  1:1590291/127‑1 (MQ=255)
                            tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTATAAAAAAAAATATAATATTTGTAT‑‑ACA‑AAAAAAATTTAAAAAAAATT‑TAAAAAAAtatttttgttttt                                                                                                   >  2:3418134/1‑125 (MQ=255)
                            tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGTTCAACC‑AAAAATATAAAAAAAAAATT‑AAAAAAAAATATTTATTTGa                                                                                                    >  1:69270/1‑128 (MQ=255)
                                  cATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGATAAACA‑AAAAAAAAAAAAAAAAAAAT‑AAAAAAAAtattttagttttattt                                                                                                >  1:176368/1‑122 (MQ=255)
                                  cATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTTTTAAAATAAAATTAAAATTTGTATAAACC‑AAAAAAAAATAAAAAAAATT‑AAAAAAAAATTTTTATTTTAGttta                                                                                               >  1:433497/1‑127 (MQ=255)
                                  cATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTATTAAAAAAAAAAAAATATTTGGCT‑ACAC‑AAAAAAAAAAAAAAAAAATT‑AAAAAAAAtaatttttttgtatttat                                                                                              >  1:2396827/1‑116 (MQ=255)
                                      aCAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTGGATAAACC‑AAAACTATATAAAAAAAATT‑AAAAAAAAAATTTTATTTTAGTTTAAAAt                                                                                           >  2:83517/1‑128 (MQ=255)
                                      aCAACGCTTTCAAAGTGTATTTTTTAGGCTAGT‑‑TTT‑TTTTTTTTTTTTTTTAAAAAAAAAATTAATAATTGGATAAAAA‑AAAAAAAATTAAAAAAAATT‑AAAAAAAAATATTTAATTAAGTTTAAAAt                                                                                           >  1:1693263/1‑128 (MQ=255)
                                        aaCGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGGTTCAACA‑AAAAATATAAAAAAAAATTT‑AAAAAAAAATGTTTATTTATGTTTAAAAttgg                                                                                        >  1:962065/1‑125 (MQ=255)
                                           gCTTTCAAAGTGTATTTTTTAGGCTTGTTTTTT‑TTTTTTTTTTTTTGTAAAAAAAAAAGTAAGATTTGGTTAAACC‑AAAAAATAATAAAAAAAATT‑AAAAAAAATATTTTTTTTGAGTTAAAAAACTg                                                                                        >  1:4272424/1‑128 (MQ=255)
                                           gCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGGATCAACC‑AAAACAATATAAAAAAAATT‑AAAAAAAAATGTTTAGTTGAGTTTCAAATCTTCa                                                                                      >  2:366743/1‑128 (MQ=255)
                                            cTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTGTAAAAAAAAAAGAAAGATTTGGATCACCC‑CAAACTATATCAAAAAAATT‑AAAAAAAAAAGTTTATTTAATGTTCaaaaaagaat                                                                                     >  2:2600410/1‑121 (MQ=255)
                                              ttCAAAGTGTATTTTTTAGGCTTGTT‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAATTAATTTTTTGTTCAACCAAAAAATTTAAAAAAAAAATA‑AAAAAAAAT‑TTTTAGTTGATTTTAAAAtattaata                                                                                    >  2:4432958/1‑121 (MQ=255)
                                              ttCAAAGTGTATTTTTTAGGCTTGTT‑TTT‑TTTTTTTTTTTTTTTAAAAAAAAAATTAATATTTTGAAAAACC‑AAAACTATTAAAAAAAAATT‑AAAAAAAAAATTTTAGTTTAGATTAAAAttagaaat                                                                                    >  2:3042068/1‑121 (MQ=255)
                                                taaaGTTTTTTTTTTATGATT‑‑‑‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                                                                               <  2:1557785/127‑1 (MQ=255)
                                                cAAAGTGTATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAAATAAGATTTGGATAAACA‑AAAACAAAATAAAAAAAATT‑AAAAAAATTATTTTAATTATGTTTAAAAAAGGCatataa                                                                                 >  1:1351957/1‑127 (MQ=255)
                                                aatgtttatttttttTGTTTTT‑‑‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCAtatata                                                                                <  1:4219474/119‑1 (MQ=255)
                                                  aattgtATTTTTTATGCTTT‑‑‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGt                                                                              <  1:2666599/125‑1 (MQ=255)
                                                    gtgtATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTTATAAACC‑AAAACAAAAAAAAAAAAATT‑AAAAAAAATATTTTTTTTTATTTTAAAATATgaaaaaaaataa                                                                             >  1:3661577/1‑117 (MQ=255)
                                                     tgtATTTTTTAGGCTTGTTTTTT‑TTTTTTTTTTTTTTTAAAAATAAAAATAATATTTGTAAAAAAC‑AAAAATATTTAAAAAAAATT‑AAAAAAAAAATTTAATTTTATTTAAAAATCTTAAtatatatt                                                                              >  2:2782715/1‑126 (MQ=255)
                                                     tgtATTTTTTAGGCTTG‑‑‑TTT‑TTTTTTTTTATTTGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAAATATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTAAGTTTAAATACTGAATATATAGTACa                                                                           >  2:1219688/1‑128 (MQ=255)
                                                      gtATTTTTTAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTGATCAACA‑AAAAATATTTAAAAAAAATT‑AAAAAAAATATTTTTTTTGATTTTAAAATATAAATATATATTaaa                                                                           >  2:4491215/1‑126 (MQ=255)
                                                      gtATTTTTTAGGCTTGCT‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTGATCAACC‑AAAACAATATAAAAAAAATT‑AAAAAAAATATTTTATTTTATTTTAAAATATGAAAATATAGTaa                                                                            >  2:331111/1‑127 (MQ=255)
                                                       tATTTTTTAGGCTTG‑‑‑TTTCTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATAAAAAAAATT‑AAAAAAAATAATTTAGTTTAGTTTAAAATCTGCATATATAATACaa                                                                          >  2:4248632/1‑128 (MQ=255)
                                                           ttttAGGCTTGT‑‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAAATAAAATTTGGATAAACC‑AAATATATTTAAAAAAAATT‑AAAAAAAAATTTTTTATTAAGTTTAAAAACTGGAAATTTATTACAAAgat                                                                      >  1:1427563/1‑126 (MQ=255)
                                                           ttttAGGCTTG‑‑‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGaa                                                                     >  2:1651208/1‑128 (MQ=255)
                                                             ttAGGCTTGTT‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGTAAAAACA‑AAAAAAATAAAAAAAAAATT‑AAAAAAAAAATTTTATTTTAGTTTAAAATAAGCATATTTATTACaaatata                                                                     >  1:2579003/1‑124 (MQ=255)
                                                                 ttttttttttt‑tttttttttttttGTAAAAATAAATGTAAGATTTGGATAAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                  <  2:1744611/120‑1 (MQ=255)
                                                                  cTTG‑‑‑TTT‑TTTTTTTTTTTTTGTAAAAAAAAAATTAAGATTTTGATCAACA‑AAAAATATTTAAAAAAAATT‑AAAAAAAATATTTTATTTGAGTTTCAAAAATAAAAATATAGTAAAAAGCAAttattca                                                              >  2:1979349/1‑123 (MQ=255)
                                                                   gtttgtttt‑tttttttttttttGTAAAAATAAAAGTAAGATTTGTATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  1:4170555/122‑1 (MQ=255)
                                                                    tttgtgtt‑tttttttttttttGTAATAATAATAGTAAGATTTGGATCAACA‑AAAACTATATCAAAAAAATT‑ATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                                                               <  2:536996/122‑1 (MQ=255)
                                                                     ttttttt‑tttttttttttttGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa                                                              <  1:4023334/124‑1 (MQ=255)
                                                                     gtttttt‑tttttttttttttGTTAAAATAAAAGTAAGATTTGGATAAACA‑AAAAGTATATAAAAAAAATT‑AAAAAAAATATTTTATTTTGATTAAAAATATGAATATATATTACAAATGAAtttttca                                                              >  2:2250585/5‑124 (MQ=255)
                                                                     g‑‑‑TTT‑TTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTGGATCAACC‑AAAAATATTTCAAAAAAATT‑AAAAAAAATTTTTTATTTTAGTTTAAAATATGCTTATATATTACAAAGTAATTTATtatat                                                           >  2:1299454/1‑127 (MQ=255)
                                                                        tttt‑tttttttttttttttAAAAATAAAAGTAATATTTTGATTAAAA‑AAATATATATAAAAAAAATT‑ATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                                                           <  1:2766871/127‑1 (MQ=255)
                                                                        tttt‑tttttttttttttttAAAAATAAAAGTAAGTTTTGGATAAACC‑AAAAATTTTTAAAAAAAATT‑AAAAAAAATATTTTTGTTTATTTTAAAATCAGAATATAATTTAAAAAGGAATTTATGATat                                                           >  2:268818/2‑127 (MQ=255)
                                                                          tt‑tttttttttttttGTAAAATTAATTTTAAGATTTTGATCAACC‑ATAACTATATCAAAAAAATT‑AAAAAATATATTTTAGTTGAGTTTCAAATCTGCATATATATTACAAAGGAATTTATGATAGaa                                                         <  1:884580/128‑1 (MQ=255)
                                                                          tt‑tttttttttttttGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                         <  2:3867005/128‑1 (MQ=255)
                                                                          tt‑tttttttttttttGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                         <  1:3814270/128‑1 (MQ=255)
                                                                           t‑tttttttttttttttAAAAATTAAAGTAAGATTTGGATCAACA‑AAAACTTTATCAAAAAAATT‑AAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                                        <  1:815198/128‑1 (MQ=255)
                                                                              ttttttttttttttAAAAATAAAAGTAATATTTGGATCAACC‑AAAACTATATAAAAAAATTT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                                      <  1:3013092/128‑1 (MQ=255)
                                                                              ttttttttttttGTAAAAATAAAAGTAAGATTTTGATAAATA‑AAAATTATATAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGaaaaa                                                      <  1:20110/128‑1 (MQ=255)
                                                                               tttttttttttGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                                                     <  2:433497/128‑1 (MQ=255)
                                                                                ttttttttttGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                                    <  1:1510026/128‑1 (MQ=255)
                                                                                    ttttttttAAAAATAAAATTAATATTTGTATAAAAC‑AAAAATATAAAAAAAAAATT‑AAAAAAAATATTTTATTTGAGTTTAAAAAATTAATATATATTAAAAAAGAATTTATATAATAAAAAAATgat                                                >  2:4203889/1‑126 (MQ=255)
                                                                                    ttttttGTATTAATAAAAGTATTATTTTGATCAAAC‑AAAAATATATCAATAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa                                                <  2:2955177/128‑1 (MQ=255)
                                                                                        ttGTTAAATTAAAAGTAAGATTTGGATAAAAC‑AAAACTATATGAAAAAATTT‑AAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGAAAAAAATGGATTAg                                            <  1:3885660/128‑1 (MQ=255)
                                                                                        ttGTAAAAATAAAAGTATGATTTTGATCAACA‑AAAACTATATAAAAAAAATT‑TAAAAAAATAGTTTAGTTTAGTTTAAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATTGATTat                                            <  2:2354909/128‑2 (MQ=255)
                                                                                          gTAAAAATAATAGTAAGATTTGTATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt                                          <  1:532614/128‑1 (MQ=255)
                                                                                             aaatTAAAAGTAAGATTTGGATCAACC‑AAAAATATATAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                       <  1:2161825/128‑1 (MQ=255)
                                                                                             aaaaTAAAAGTAAGATTTTGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact                                       <  2:3753415/128‑7 (MQ=255)
                                                                                               aaTAAAAGTTAGATTTGGATAAAAA‑AAAACTATATAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATaa                                     <  1:3115970/128‑1 (MQ=255)
                                                                                                aTAAATGTAAGATTTTGATCAAAC‑AAAACTATATAAAAAAAATT‑AAAAAAAATATTTTAGTTGAGTTTCATATCTGCATATATGGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt                                    <  2:1141531/128‑1 (MQ=255)
                                                                                                 tttaaGTTATATTTGTATTAACT‑AAAACTTTTTAAATAAAATT‑AAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  1:2072745/125‑1 (MQ=255)
                                                                                                 tAAAAGTAAGATTTGGATCGACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  1:3973880/128‑1 (MQ=255)
                                                                                                 tAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAATAAAATGGATTAGTTGATAATc                                   >  2:2088051/1‑128 (MQ=255)
                                                                                                  aaaaGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  >  2:40946/1‑128 (MQ=255)
                                                                                                   aaaGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                                 <  1:3747128/128‑1 (MQ=255)
                                                                                                    aaGTAAGATTTTGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                <  1:577902/128‑1 (MQ=255)
                                                                                                    aaGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                >  2:1812303/1‑128 (MQ=255)
                                                                                                    aaGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                <  2:4027961/128‑1 (MQ=255)
                                                                                                         aGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           >  2:625335/1‑128 (MQ=255)
                                                                                                         aGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           >  2:897841/1‑128 (MQ=255)
                                                                                                         aGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           >  2:1476379/1‑128 (MQ=255)
                                                                                                          gATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          <  2:3572286/128‑1 (MQ=255)
                                                                                                          gATTTGGATCAAAC‑AAAAATATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          <  1:4080910/128‑1 (MQ=255)
                                                                                                           aTTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa                         <  2:2854053/128‑1 (MQ=255)
                                                                                                           aTTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa                         >  1:3604607/1‑128 (MQ=255)
                                                                                                            tttGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                        >  1:3952680/1‑128 (MQ=255)
                                                                                                              tGGATCAACC‑AAAACTATATCAAATAAATT‑AAAAAAAATAGTTTAGGTGAGTTTCTAATCTGCATATATAGTACAAAGGAATTTATGATAGATAAAAATGGATTTGTTGAGATTCGATTTTTTAAgtt                      >  1:1891848/1‑128 (MQ=255)
                                                                                                              tGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                      >  1:4500831/1‑128 (MQ=255)
                                                                                                                gATCAACC‑AAATATATATCAAAAAAATT‑AAAAAAAATAGTTTAGGTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg                    <  1:488154/128‑1 (MQ=255)
                                                                                                                  tCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGtt                  <  1:3859313/128‑1 (MQ=255)
                                                                                                                   taaaacataaCTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGtt                  <  1:1087926/120‑1 (MQ=255)
                                                                                                                   cAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt                 <  1:346569/128‑1 (MQ=255)
                                                                                                                    ctaacaataatatataAAAAAAATT‑AATAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt                 <  1:2932279/118‑1 (MQ=255)
                                                                                                                     aCC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat               >  2:468118/1‑128 (MQ=255)
                                                                                                                     aCC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat               >  2:2139970/1‑128 (MQ=255)
                                                                                                                       ctaaatCTATATCATAATTATT‑AAAATAAATAGTTTAGTTGAGTTTCAAATATGAATATATAGTAAAAATGATTTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt              <  2:716822/126‑1 (MQ=255)
                                                                                                                       c‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGATTTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatta             >  1:3356900/1‑128 (MQ=255)
                                                                                                                       c‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatta             <  2:3900512/128‑1 (MQ=255)
                                                                                                                         aataatatataAAAAATATT‑AAAAATATTTGTTTATTTGATTTTTAAATCTTAATATATATTATAAATTAATTTATTATAGAAAAAAATTTATTAGTTGATAATACATTTTTTAATTTTGTTTATTaa            <  1:3274147/123‑1 (MQ=255)
                                                                                                                          aaaCTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa           <  1:3571557/128‑1 (MQ=255)
                                                                                                                               atatCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                         <  2:3979745/77‑1 (MQ=255)
                                                                                                                               atatCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                                 >  1:2470746/1‑101 (MQ=255)
                                                                                                                               atatCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                                 <  2:2470746/101‑1 (MQ=255)
                                                                                                                               atatAAAAAATATT‑AAAAAATATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAATATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      <  2:3500448/128‑1 (MQ=255)
                                                                                                                                tatCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAAttatta     >  2:141915/1‑128 (MQ=255)
                                                                                                                                 atCAAAAAAATTAAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAAttatta     >  1:2297481/1‑128 (MQ=255)
                                                                                                                                   cAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGc  >  1:4423023/1‑128 (MQ=255)
                                                                                                                                   |                                                                                                                                
GCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTT‑TTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACC‑AAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203826‑204079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑