Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA44.5% 1811.5 / inf 2185intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (374/789);  new base A (783/148);  total (1173/1012)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2238 total aligned reads displayed.

AGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420126‑420378
                                                                                                                                   |                                                                                                                               
   aaaCTATAACCACTTTTTTAAAAAATTTTTAATTTTAAAAAATGAATTATTTTTCAAATTTTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGGTCG‑‑TTTTTTTTTTTTTTTTTACaaa                                                                                                                              <  2:5417660/128‑1 (MQ=255)
     actactAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGATCG‑‑ATTTTTTTTTTTTTTTTACaaaaa                                                                                                                            >  2:4284990/1‑128 (MQ=255)
      ctactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTTaaaaaaa                                                                                                                           >  2:5494383/1‑127 (MQ=255)
           ttaaattttttAAAAAATTTTTAATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTTTTTTAAAATTATTATTTATTAATAAATTTTT‑‑TTATCGT‑TTTTTTTTTTTTTTTTTACAAAAATATaa                                                                                                                       <  2:3598301/123‑1 (MQ=255)
              aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TTCTCGT‑TTTTTTTTTTTTTTTTTAAAaaaataaaatat                                                                                                                    >  1:1006258/1‑126 (MQ=255)
               cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAatttat                                                                                                                  >  2:1683746/1‑128 (MQ=255)
                ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATTTAatttata                                                                                                                 >  2:1829440/1‑127 (MQ=255)
                 tttttAAAAAATTTATAATTTTAAAAAATTAATTTTTTTTTAAATTTTTAAATTATTTTTAAATAATTTTTTTTTTATTAATTTTT‑‑TTCTTG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAatttattt                                                                                                                <  2:4146473/128‑1 (MQ=255)
                  ttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAatttattta                                                                                                               >  2:1304293/1‑127 (MQ=255)
                   tttAAAAAATTTTTAATTTTAATAAATTAAATATTTTTAAAAATTTTAAATTATTTTAAAATAATTATATATTAATAAATTTTT‑‑TTCTAG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGa                                                                                                              <  1:5429483/128‑1 (MQ=255)
                    ttAAAAAATTTTTTATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTTTTTTAAAATAATTATTTTTTTATAAATTTT‑‑‑TTTTTT‑‑TTTTTTTTTTTTTTTTTGCAAAAATATAATTTATTTGAtt                                                                                                            <  2:4614560/128‑1 (MQ=255)
                    ttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAAAAATAAtttattttat                                                                                                             >  1:5339637/1‑128 (MQ=255)
                     tAAAAAATTTTTAATTTTATAAAATTAATTTTTTTTTAAATTTTTAAATTTTTTTAAAATAATTATATATTAATAAATTTTT‑‑TTCTCT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGAtt                                                                                                            <  2:562871/128‑1 (MQ=255)
                       aaaatTTTTTAATTTTAATAAATTTATTTTTTTTTAAATTTTTAAATTTTTTTTAAAATATTATTTTTTAATAAATTTTATTTTTTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGAtt                                                                                                            <  2:6285581/128‑1 (MQ=255)
                        aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTaaa                                                                                                         >  2:5339773/1‑128 (MQ=255)
                        aaaaTTTTAATTTTAAA‑AAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAAc                                                                                                        <  2:622019/128‑1 (MQ=255)
                              tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCGT‑TTTTTTTTTTTTTTTTTAAAAAAAAATAATTTATTTGATATAACTtat                                                                                                    >  2:5135285/10‑128 (MQ=255)
                               ttaattttaatAAATTAATTATTTTTTAAATTTTTAAATTATTTTAAAATTATTATATATTAATAAATTTTA‑‑TTCTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTatat                                                                                                  <  1:24883/120‑1 (MQ=255)
                                 aattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATATTTTATTTTATTAAAAGTtttttt                                                                                                >  2:5987668/7‑128 (MQ=255)
                                 aattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAACTTATtttt                                                                                                >  1:1850466/7‑128 (MQ=255)
                                 aatataaataaatTAATTAATTTTAAAATTTTTAAATTATTTTAAAATAAATATATATTAATAAATTTTA‑‑TTCTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATAttt                                                                                                <  1:2054771/123‑1 (MQ=255)
                                    tttaatAAATTAATTATTTTTTAAATTTTTAATTTTTTTTATAATAATTATATATTTATAAATTTTA‑‑TTTTAG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACATAAAtatacg                                                                                             <  1:1951251/125‑3 (MQ=255)
                                     ttaatAACTTTATTATTTTTTAAATTGTTAAATTATTTTCAAATAAATATCTATTAATAAATTTTA‑‑TGCT‑T‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGtt                                                                                           <  2:5000821/126‑1 (MQ=255)
                                     ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAAATTAAATTTATGt                                                                                            >  1:1732475/3‑128 (MQ=255)
                                      taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCT‑‑TTTTTTTTTTTTTTTTAAAAAAAATTAAAATTAATATATTAAAATTAAAtttttttt                                                                                           >  1:4695343/2‑123 (MQ=255)
                                      taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCGT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACTTATATTTAttt                                                                                            >  1:2371403/2‑126 (MQ=255)
                                       aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑‑‑TTTTTTTTTTTTTTTACAAAAAAATAATTTATTTTATTAAACTTTTATTTATGTTtaa                                                                                        >  2:1456926/1‑128 (MQ=255)
                                       aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATATATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTAATTTATTAAAATAATATTTATtttt                                                                                          >  1:3711488/1‑128 (MQ=255)
                                          aatttatttttttttAATATTTTTAAATTATTTTTTAATTATTTTTTATTTTTTATTTTTT‑‑TTTTAG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaat                                                                                       <  2:2706212/118‑1 (MQ=255)
                                          aaCTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TTCTCGTTTTTTTTTTTTTTTTTTTACAAAAATATAATATATTTTATTAAAATTTTATTTATTTTta                                                                                         >  1:943520/1‑128 (MQ=255)
                                            attaaTTATTTTTAAAATTTTTTATTTAATTTAAAATTATTATATATTTATAAATTTTA‑‑TTTTTG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                     <  2:2124365/125‑1 (MQ=255)
                                             tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTTTTTAAACGTATATTTATTTTTATTaaa                                                                                    >  2:721793/1‑128 (MQ=255)
                                                 ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTAACAAAAAAATAATTTATTTTATTAAACTTTTATTTATGTTAAAAAAAAA‑Tg                                                                               >  1:1345720/1‑128 (MQ=255)
                                                 ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAAATTAATTTTATTTATTTAAAC‑TATATTTTTGTTTAATtaaaaatt                                                                               >  1:4062876/1‑125 (MQ=255)
                                                     ttttCAAATTTTTAAATTATTTTTAAATCATTAAATATTAATCAATTTTA‑‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGaaaa                                                                          <  1:6506975/128‑1 (MQ=255)
                                                      tttaaatattttAAATAATTTTAAAATCAATATTTATTATTTAATTTAT‑‑TTCTTG‑‑TTTTTTTTTTTTTTTTTAGAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGaaaa                                                                          <  1:4971215/118‑1 (MQ=255)
                                                        tCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCGT‑TTTTTTTTTTTTTTTTTACAAAAATATTATTTATTTTATTAAACGTTTATTTTTGTTTTATAAAAA‑TGAaaaat                                                                         >  2:6090044/1‑127 (MQ=255)
                                                             ttGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAAAATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAA‑TTTAaaataaattt                                                                   >  1:2699564/1‑125 (MQ=255)
                                                             ttGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTAAAAAAAAAAAATTTTATTTTTTTAAAGTTATTTTTTTTTTAAATAAAAT‑TTAAaaagattgta                                                                   >  1:5587159/1‑123 (MQ=255)
                                                               tttAAATTAATTTAAAATTATTATATTTTAATAAATTTTA‑‑TTTTTG‑‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAAt                                                                <  2:6388842/127‑1 (MQ=255)
                                                                  aatttattTTAAAATAATTTTATATTAATAAATTTTA‑‑TTTTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTg                                                              <  1:5743206/125‑1 (MQ=255)
                                                                    attattTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATTTTTATGTTTATTAAAAA‑TGTAAAAGAATGTGAATTGTc                                                            >  1:5988577/1‑128 (MQ=255)
                                                                    attattTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAACTTATATTTTTTTTTAATAAAAA‑TGAAAAAAAAAGTTAATTGTc                                                            >  2:5247002/1‑128 (MQ=255)
                                                                      tattTTCAAATCATTATCTATTAAACAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAAAGTATATTTATGTTTAATAAAAA‑TTTAAAATAAaattaattttaat                                                          >  1:4544029/1‑123 (MQ=255)
                                                                       attTTTAAATATTTATCTATTTTTTAATTTTA‑‑TGTTAT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCata                                                         <  2:5064885/128‑1 (MQ=255)
                                                                       attTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAAAAAAATTTATTTTATTAAACATATATTTATGTTTAAAAAAAA‑TTGAAAAGAAAGTTAATTGTCata                                                         >  2:4391209/1‑128 (MQ=255)
                                                                        ttttCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTAAAAATATATAATTAATTTTATTAAACGTATATTAATTTTTAATAAAAT‑TGTAAAATAAAATTAATTGtaataaa                                                       >  2:6608686/1‑127 (MQ=255)
                                                                        ttttCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAACTTATATTTATTTTTTATAAAAA‑TTTAAAATAAATTTAATTTTAatatt                                                       >  1:73860/1‑126 (MQ=255)
                                                                        ttttAATATAATTATTTATTAATAAATTTTT‑‑TTATAT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCataa                                                        <  1:2193522/128‑1 (MQ=255)
                                                                         tttCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAACGTATTTTTTTTTTTAAAAAAAA‑TTTAAAAGAAAGTTAATTGTAattat                                                       >  2:322825/1‑128 (MQ=255)
                                                                              aaTCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTATTAAAAA‑TGTAAAAGAAATTTAATTTTAATAAtaattt                                                  >  1:6086483/1‑128 (MQ=255)
                                                                               aTCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACGTATATTTATGTTTATTAAAAA‑TGAAAAATAAAGTGAATTTTAATAAtaattta‑a                                               >  1:386681/1‑128 (MQ=255)
                                                                                tCATTATCTATTAATCAATTTTA‑‑TGCTCGT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACTTATATTTATTTTTAATAAAAA‑TGTAAAAAAAATTAAATTTTAATATaaattta                                                 >  1:3428253/1‑128 (MQ=255)
                                                                                 cATTATCTATTAATCAATTTTA‑‑TGCTCGT‑TTTTTTTTTTTTTTTTTACAAAAATAAAATTTATTTGATTAAAAGTATATTTATTTTTAAAAAAAA‑TTGAAAAGAAAATTAATTTTAATAAtaattta‑a                                               >  1:5150629/1‑128 (MQ=255)
                                                                                 cATTATCTATTAATCAATTTTA‑‑TGCTCGT‑TTTTTTTTTTTTTTTTTAAAAAAATAAAATTTATTTTATTAAACGTTTTTTTTTGTTTAATAAAAA‑TGGAAAAAAAATTAAATTTTAATAAtaattta‑a                                               >  1:5808390/1‑128 (MQ=255)
                                                                                 cATTATCTATTAATCAATTTTA‑‑TGCTCGT‑TTTTTTTTTTTTTTTTTAAAAAAATAAAATTAATTTATTTAAACTTATATTTTTTTTTAAAAAAAT‑TGAAAAAAAAAGATAATT‑TAAAAAtaattttaa                                               >  2:1960391/1‑125 (MQ=255)
                                                                                       cTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTAATTAAAAGTA‑ATTTATTATTTATAAAAATTGAAAAAAAAAGTAAATT‑TAATTAAAATTTATATTAAata                                        >  2:3025243/1‑128 (MQ=255)
                                                                                        tATTAATCAATTTTA‑‑TGCTCGT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACGTATATTTTTTTTTAATAAAAA‑TTTAAAAAAAATTTAATTTTAATAATAATTTA‑ATTAAata                                        >  1:2588035/1‑128 (MQ=255)
                                                                                         aTTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAAAATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAatata                                      >  1:5649080/1‑128 (MQ=255)
                                                                                         aTTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAAAATAATTTATTTTATTAAACGTATATTTATTTTTAAAAAAAA‑TTGAAAATAAATTTAATTTTCAAATTATTTTA‑ATTAAataaa                                      >  1:1602284/1‑126 (MQ=255)
                                                                                           tAATCAATTTTA‑‑TGCTCGT‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAA‑TGGAAAATAAATTTAATTTTAATAATAATTTA‑ATTAAatatat                                     >  1:81109/1‑128 (MQ=255)
                                                                                           tAATCAATTTTA‑‑TGCTCG‑‑‑‑‑TTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACTTAAATTTATGTTTAATAAAAA‑TGTAAAATAAATTGAAATTTAATAATAATTTA‑ATTAAATATATAACa                                 >  2:3377291/1‑128 (MQ=255)
                                                                                               cAATTTTA‑‑TGCTCGTTTTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAA‑TGTAAAAGAAATTTAATTTTAATAATAATTTA‑ATTAAATATATaaa                                  >  1:1433480/1‑127 (MQ=255)
                                                                                               cAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAAAGTAAATTTATTTTTAATAAAAA‑TTGAAAAAAAATTAAATTGTCAAAATAATTTA‑ATTAAATATATAaaaa                                >  1:5239131/1‑128 (MQ=255)
                                                                                                 aTTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAA‑TGAAAAAAAAAGTTATTTTTAATAATAATTTA‑ATTAAAAATATAACattt                              >  1:5896515/1‑125 (MQ=255)
                                                                                                    ttA‑‑TGCTCGT‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAACGTATATTTATGTTTAATAAAAA‑TTGAAAAAAAATTTAATTGTAATAATAATTTA‑ATTAAATTAATAAAAATGTa                            >  1:3548875/1‑128 (MQ=255)
                                                                                                    ttA‑‑TGCTCG‑‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATTTTTATGTTTAATAAAAA‑TGTAAAAAAAATTGAATTGTAATAATAATTTA‑ATTAAATATATAACAATGTaat                          >  2:5693842/1‑127 (MQ=255)
                                                                                                     tA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAAAAAAATTTATTTTATTAAAAGTAAATTTATTTTTAAAAAAAA‑TATAAAAAAAATTAAATTTTAAAAAAAATTTA‑ATTAAAATAATAAAAATTTaat                          >  2:836340/1‑127 (MQ=255)
                                                                                                      a‑‑TGCTCG‑‑‑TTTTCTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGtt                        >  1:4204199/1‑128 (MQ=255)
                                                                                                         tGCTCGT‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAACGTATATTTTTTTTTAATAAAAA‑TTTAAAAAAAATTTAATTTTAATAATAATTAT‑ATTAAATATATAAAAATTTaatt                         >  1:1661940/1‑126 (MQ=255)
                                                                                                         tGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAA‑TGAAAAATAAAGTGAATTTTCATAATAATTTA‑ATTAAATATATAACaatttaattt                        >  1:5059343/1‑128 (MQ=255)
                                                                                                          ttttttttttttttttttttttttAAAAAAATATAATTTATTTGATTAAAATTATATTTATTTTTAATAAAAA‑TGTAAAAGAAATTGAATTGTAATAATAATTTA‑ATTAAATATATAACAATGTAAGt                         <  2:3985860/121‑1 (MQ=255)
                                                                                                           gttatttttttttttttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGtt                        <  2:5894871/122‑1 (MQ=255)
                                                                                                            ttg‑‑TTTTTTTTTTTTTTTTTAAATAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTa                     <  1:5518209/126‑1 (MQ=255)
                                                                                                            ttg‑‑TTTTTTTTTTTTTTTTTAAAAAAATATTATTTATTTGATTAATCGTATATTTATGTTTAATAAAAA‑TTGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTa                     <  1:485878/126‑1 (MQ=255)
                                                                                                             cG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACTTTTATTTATTTTTAATAAAAT‑TTTAAAATAAATTTAATTTTAAAAATAATTTA‑ATTAATTATATAAAAATTTAATTTTTaa                    >  1:1120736/1‑128 (MQ=255)
                                                                                                              ttttttttttttttttttttACATAAATATTATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAA‑TGTAATAGAAAGTGAATTGTTATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTa                     <  1:2817784/125‑1 (MQ=255)
                                                                                                              ttttttttttttttttttttAAAAATATATTATTTTTTTTATTAAAAGTATATTTATTTTTAATAAAAA‑TGGAAATTAAATTTAATTTTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTa                     <  2:2409439/125‑1 (MQ=255)
                                                                                                              ttttttttttttttttttttAAAAATATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTa                     <  1:4383992/125‑1 (MQ=255)
                                                                                                              g‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTTTTTTATTAAACTTTTTTTTATTTTTAAAAAAAA‑TGTAAAAAAAATTTAATTTTAATAATATTTTA‑ATTAATTATATAAAAATTTAATTTTTaaa                   >  1:6303029/1‑128 (MQ=255)
                                                                                                              cgttttttttttttttttttAAAAAAAAAAAATTTTTTTGTTTAAAATTTTTTTTTTTTTTATTAAAAA‑TGTAAAAAAAATTAAATTTTAAAAAATATTTA‑ATTAAATTTATAAAAATTTTAGttttt                     >  2:2817784/4‑127 (MQ=255)
                                                                                                              attgttttttttttttttttATAAAAATATAATTTATTTGATTAAAAGTATATTTATTTTTAATAAAAA‑TGGAAAAGAAATTGAATTGTAATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTa                     <  2:2560647/124‑1 (MQ=255)
                                                                                                               gttttttttttttttttttAAAAAAATATAATTTATTTGTTTAAACTTATATTTATTTTTAATAAAAA‑TGTAAAATAAAGTTAATTGTAATAATAATTTA‑ATTAAATATATAAAATTTTAATTTTTaa                    >  1:2929507/3‑128 (MQ=255)
                                                                                                                 tttttttttttttttttATATATATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTaaaa                  <  2:2285299/128‑1 (MQ=255)
                                                                                                                    ttttttttttttttATAAAAATATAATTTATTTGATTTAACGTATATTTATGTTTAATAAAAA‑TGTAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAactt               <  1:6626153/128‑1 (MQ=255)
                                                                                                                    ttttttttttttttATAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAactt               <  2:3772506/128‑1 (MQ=255)
                                                                                                                    ttttttttttttttAAAAAAATATAATTTATTTTATTATAAGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAactt               <  1:3295113/128‑1 (MQ=255)
                                                                                                                     tttttttttttttACATTAATATAATTTATTTTATTAAAAGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTTTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAactta              <  2:1594238/128‑1 (MQ=255)
                                                                                                                        ttttttttttAAAAAAATATTATTTATTTTATTAAACGTTTATTTATTTTTAATAAAAA‑TTTAAAATAAATTTAATTTTCATAATTATTTA‑ATTAAATATATAAAAATTTTATTTTTAAAaattaatt           >  1:1247036/1‑128 (MQ=255)
                                                                                                                         tttttttttAAATAATTATAATTTATTTTATTAAAAGTATATTTATGTTTAATAAAAA‑TGTAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAACTTACttt          <  2:1121787/128‑1 (MQ=255)
                                                                                                                          ttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt         <  2:3466539/128‑1 (MQ=255)
                                                                                                                           tttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt        <  2:6511667/128‑1 (MQ=255)
                                                                                                                           tttttttAAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAA‑TGTAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt        <  1:2259454/128‑1 (MQ=255)
                                                                                                                            ttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TTGAAAAGAAATTGAATTTAAATAATATTTTA‑ATTAAATATATAAAAATTTAATTTTTAAAAATTAAtttttt       >  1:641107/1‑128 (MQ=255)
                                                                                                                            ttttttAAAAAAATATAATTTATTTGATTTAACGTATATTTTTTTTTAATTAAAA‑TGTAAAATAAATTTAATTTTAATAATAATTTA‑ATTAAATATTAAAAAATTTAATTTTTAAAACTTAAtttttt       >  1:4293581/1‑128 (MQ=255)
                                                                                                                             tttttATAAATATATTATTTTTTTTATTAAAATTATATTTATGTTTAATAAAAA‑TTTAAAATAAAGTTAATTTTAATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg      <  2:4783566/128‑1 (MQ=255)
                                                                                                                             tttttAAAAAAATATAATTTATTTGATTAAAAGTATATTTATTTTTAATAAAAA‑TTGAAATGAAATTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAACTTACtttttta      >  1:3133115/1‑127 (MQ=255)
                                                                                                                               tttACAAAAATATAATTTATTTGATTATAAGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt    <  1:619866/128‑1 (MQ=255)
                                                                                                                               ttaaCAAAAATATAATTTATTTGATTAAACTTAAATTTATGTTTAATAAAAA‑TGGAAAAAAAAGTAAATTTTCATAATAATTTA‑ATTAAATATATAACAAAGTAACTATTAAAAATTACTtttttttt    >  2:5550071/4‑128 (MQ=255)
                                                                                                                                 tACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt  <  2:581111/128‑1 (MQ=255)
                                                                                                                                   |                                                                                                                               
AGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑TGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAA‑TGGAAAAGAAAGTGAATTGTCATAATAATTTA‑ATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420126‑420378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑