Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2500T.55.2% inf / inf 2067intergenic (+214/‑328)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (486/410);  new base . (818/286);  total (1313/754)
Fisher's exact test for biased strand distribution p-value = 2.27e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2566 total aligned reads displayed.

ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377
                                                                                                                                  |                                                                                                                                
  aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTTAAAAAAATA‑TC‑tat                                                                                                                                >  1:4841653/1‑126 (MQ=255)
    tatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATATTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAAATTTTAAAAAATA‑GC‑ttttt                                                                                                                              >  1:4027577/1‑128 (MQ=255)
     atTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATAAATTTGAACTTGTTAAAAATA‑GC‑tttttt                                                                                                                             >  2:6487801/1‑128 (MQ=255)
        tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑TA‑ttttttttt                                                                                                                          >  1:2048130/1‑128 (MQ=255)
          gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑ttttatttttt                                                                                                                        >  2:2650216/1‑128 (MQ=255)
            ttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GA‑ttttttttttttt                                                                                                                      >  1:1000505/1‑128 (MQ=255)
             tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑ttttattttttttt                                                                                                                     >  1:3203865/1‑128 (MQ=255)
             tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑tatttttttttttt                                                                                                                     >  2:400984/1‑128 (MQ=255)
              cATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑ttttttttttttttt                                                                                                                    >  2:4626851/1‑128 (MQ=255)
              cATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTCTAAAAAATA‑GC‑tttttattttttttt                                                                                                                    >  1:6192896/1‑128 (MQ=255)
                ttAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑ttttttttttttttttt                                                                                                                  >  2:2790619/1‑128 (MQ=255)
                ttAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAAAA‑GC‑ttttttttttttttttt                                                                                                                  >  2:3281022/1‑128 (MQ=255)
                ttAATTTATCGCAATTGTATTAATTAGTAAGAAAATAAAAATATTATATTTTTATATTTTTTTTGTTTA‑TGCAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATT‑GC‑ttttttttttttttttt                                                                                                                  <  2:1616124/128‑1 (MQ=255)
                  aaTTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑tttttttttttttttttt‑t                                                                                                               >  2:3675395/1‑128 (MQ=255)
                   aTTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑ta                                                                                                              >  1:3340676/1‑128 (MQ=255)
                      tATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑tttttttttttttttttt‑ttata                                                                                                           >  2:5017749/1‑124 (MQ=255)
                       aTCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTATTTTTTTT‑TATAATg                                                                                                         >  1:1593745/1‑128 (MQ=255)
                         cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑ttttttttttttttttttaaaattta                                                                                                         >  1:719211/1‑120 (MQ=255)
                          gCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TAAAAttta                                                                                                       >  1:4686276/1‑125 (MQ=255)
                          gCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTta‑taaagaaat                                                                                                       >  2:1056805/1‑121 (MQ=255)
                               tGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑taattaaattataa                                                                                                  >  2:6339911/1‑116 (MQ=255)
                               tGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TAAAATTTAAAtata                                                                                                 >  1:4428936/1‑128 (MQ=255)
                                  ttGAATTTTTAATAAAATAAAAATATTATCTTTTTATATTTTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTTAAATTGTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAAtt                                                                                             <  2:3569796/127‑1 (MQ=255)
                                      aTTAGTAATAAACTAAAACTATTATTTTTTTATATTTTTTTTGTATA‑TTCAAATTTTTAAAAAATTAATTTGAAATTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAAttt                                                                                            <  2:5582529/128‑1 (MQ=255)
                                      aTTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATTTAAA‑ATAAAATTTaa                                                                                         >  2:817723/1‑127 (MQ=255)
                                        tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TATAATTAAAAAAAAATtttttt                                                                                         >  2:55023/1‑126 (MQ=255)
                                        tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATATTTTAAATATAAAatttttt                                                                                        >  2:1260250/1‑125 (MQ=255)
                                            aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGGATATATAATTTTTTGGTAtt                                                                                    >  2:5921993/1‑128 (MQ=255)
                                              gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TAAAATGTAAATATAAATTTTTTTTAtttt                                                                                  >  2:5399620/1‑128 (MQ=255)
                                               aaactaaaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATTAAAAAAAAAATTTTATTTAttttt                                                                                 >  1:2244855/1‑127 (MQ=255)
                                               aaactaaaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTT‑TATAATTTAAAAATAAATTTTattaatttttt                                                                                >  1:4273099/1‑118 (MQ=255)
                                                 actaaaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TATATTTTAAATATAAATTTTAGGTAtttttt                                                                                >  1:5342167/1‑126 (MQ=255)
                                                    aaaaattTTATATTTTTATAATTTTTTTGTATT‑TGCTAATTTTTAAAAAATTAATTTTATCTTGTAAAAAAAT‑GC‑‑‑TTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCt                                                                           <  1:792883/128‑1 (MQ=255)
                                                        attttatTTTTTTATATTTTTTTTTTATATTTAAAATTTTTAAAAAATTATTTTTAAATT‑TTAAAAATA‑‑T‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                        <  1:3710205/125‑1 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TATAATTTAAATATAAATTTTATTTATttttttttatatt                                                                        >  1:235192/1‑121 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATATTGTAATTATAAATTTTTGTTTTTTTTTTTTCTaatt                                                                       >  2:5235653/1‑126 (MQ=255)
                                                         attttttttttttTATATTTTTTTTAT‑‑TTTAAATTTTTTAAAAATTAATTTTTAATTTTTAAAAAT‑‑TT‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTa                                                                      <  2:1869174/121‑1 (MQ=255)
                                                          attatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑G‑‑‑‑ATTTTTTTTTTTTTTT‑TATAATGTAAATATAAATTTTATTTATttttttttattattttt                                                                    >  1:1500008/1‑117 (MQ=255)
                                                          attatATTTTTTTTTATTTTTTTTTTT‑TTTAAATTTTTAAAAAATTAATTTTTAATTTTTAAAAATATAT‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                        <  1:5935539/128‑1 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑T‑TAATTTAAATAAAAATTTTTGTTTTTTTTTTGTCTaataaa                                                                     >  2:382603/1‑124 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑‑‑TTTTTTTTTTTTTT‑TATTATGGAAATATAAATTTTATGTATTTTGTTGTCTAATTATCTa                                                                  >  2:3015688/1‑128 (MQ=255)
                                                            tatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TAAAATTTAAATATAAATTTTAATTATTTTTTTTTATAATTAt                                                                     >  1:905186/1‑128 (MQ=255)
                                                             ttttttttttttatTTTTTTTTTA‑TTTAAATTTTTAAAAAATTTTTTTTAAATTTTTAAAAATT‑TT‑TTTTTTTTTTTTTTTTTTATATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                     <  1:5694179/117‑1 (MQ=255)
                                                                ttttttTATATTTTTTTTTTA‑TTTTAATTTTTTAAAAATTTATTTTTAATTTTTAAAAATA‑TT‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaa                                                                 <  1:2554250/128‑1 (MQ=255)
                                                                  tttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTT‑TATAATTTAAATATAAATTTTATTTTTTTTTTTGTAAAATTAAATaaaaaaa                                                            >  2:1716922/1‑128 (MQ=255)
                                                                   ttttttatTTTTTTTATT‑TTAAATTTTTTAAAAAATTAATTTTAAATTTTAAAATATA‑‑‑‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                            <  1:6512536/123‑1 (MQ=255)
                                                                       ttatTTTTTTTATT‑TTTAAATTTTTAAAAAATTTATTTTTAATTTTTAAAAATA‑‑T‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                         <  2:2174662/127‑1 (MQ=255)
                                                                       attttttttttATT‑TGCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                        <  2:343743/125‑1 (MQ=255)
                                                                       attttttttGTTTA‑TTAAATTTTTTAAAAAATTAATTTTAACTTTTAAAAAATA‑TC‑‑TTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                         <  2:6600033/125‑1 (MQ=255)
                                                                       aatttttttttAT‑‑TGAAAATTTTTTAAAAATTAATTTTATATTTTAAAAAATA‑TC‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                         <  1:5505499/125‑1 (MQ=255)
                                                                           ttttttTATA‑TTCAAATTTTTTAAAAATTAATTTTAAATTTTAAAAAAAA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAg                                                     <  1:6295359/128‑1 (MQ=255)
                                                                               tGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAAGTATCAAAAAAAATAGAAAGTaaa                                                 >  1:5038960/1‑128 (MQ=255)
                                                                                ttttttttcAAATTTTTAAAAAATATATTTTTAATTTTAAAAAAAT‑TC‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaa                                                  <  1:6031119/120‑1 (MQ=255)
                                                                                tttttatttaaaTTTTTTAAAAATTAATTTTTAAATTTAAAAAAAA‑TT‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaa                                                  <  2:5803662/119‑1 (MQ=255)
                                                                                gTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGTAAATATAAATTTTAGGTTTTTTTTTTTATAATAATATAAAAAAATAtaaaataaaa                                                >  2:53185/1‑128 (MQ=255)
                                                                                 tttttttaaaaTTTTTAAAAAAATATTTTTTACTTGTTAAAATAT‑GC‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                 <  2:6110791/120‑1 (MQ=255)
                                                                                 tata‑TGCAAATTTTTAAAATATTAATTTGAACTTGTAAAAAATA‑CC‑‑‑‑‑TTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAata                                            <  1:5149320/128‑1 (MQ=255)
                                                                                 gtttatttaaaTTTTTTAAAAATTAATTTTAAATTTTTAAAAATA‑‑T‑GTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaa                                                <  1:3056283/120‑1 (MQ=255)
                                                                                     atttaaaTTTTTTAAAAATTAATTTTTAATTTTATAAAATA‑TA‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGTTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                             <  1:2912919/124‑1 (MQ=255)
                                                                                      tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGTAAATATAAATTTAACTTATTTTTTGGAATAATTAAATAAAAAAAAAGAAATAAAAAAatat                                           >  2:4173522/1‑128 (MQ=255)
                                                                                      tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTT‑TATATTTTAAATAAAAATTTTAGTAATTTTTTTTTATAATTAAATAAAAAAATAAAAATAAAAAAAAAtt                                          >  1:2657295/1‑128 (MQ=255)
                                                                                        taaaTTTTTAAAAAATAAATTTTAACTTTTAAAAAAT‑‑TT‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTg                                         <  2:6008242/127‑1 (MQ=255)
                                                                                        cAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTATGTATTTTTTTTTATAATTTTATAAAAAAATAGAAAGGAAAAAATAttt                                         >  1:5753252/1‑127 (MQ=255)
                                                                                         aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGTAAATATAATTTTTATGTTTTTTTTTTTAAATTTAAATAAAAAAATAAAAATTAAAAattatttt                                        >  2:5126792/1‑126 (MQ=255)
                                                                                         aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAAAAAAAAAAAAAATTTTAGGTATTTTTTGGAGTATTTTAATAAAAAAATAAAAAGTAAAAAAAATTGt                                        >  2:1417014/1‑128 (MQ=255)
                                                                                         aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTT‑TAAAATGGAAATATAAATTTTATGTATTTTGTTTTATAATTATATAAAAAAAAAGAAAGGAAAAAATATTTTTa                                      >  1:3908566/1‑128 (MQ=255)
                                                                                          aaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTT‑TATAATGTAAATATAAATTTTATGTATTTTTTTGTATAATTATTAAAAAAAAAATAAAGAAAAAAATTTTTTTa                                      >  2:4461436/1‑128 (MQ=255)
                                                                                           aTTTTTAAAAAATTTATATTAAATTTTAAAAAATA‑‑T‑GTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTa                                      <  2:4302826/128‑1 (MQ=255)
                                                                                           aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTATGTTTTTTTTTGTGTAATTATAAAAAAAAATATAAAGGAAAAAATATtttt                                       >  1:2165649/1‑128 (MQ=255)
                                                                                             tttAAAA‑AATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTTTTTTATAAGTATATAAAAAAATATAAAGTAAAAAATATTGTTaaaa                                   >  1:6099878/1‑128 (MQ=255)
                                                                                               ttaaaaaaTTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATTTAAATAAAAATTTTAGTTATTTTGTTTTCTATTTATATAAAAAAATAAAAAGGAAAAAATATTTTTaaaat                                  >  1:4148907/3‑127 (MQ=255)
                                                                                                 aaaaaaTTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTATT‑T‑TAATGGAAATAAAAATTTTTGGTATTTTTTTGTCTAATTATATAAAAAAAAAAAAAGGAAAAAATATTGTAAAAAgaa                                >  2:4829647/1‑126 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TATAATGAAAATATAAATTTAATTTTTTTTGATTTATAATTTTATAAAAAATTATAAAGGAAAAAAAATTTATAATATTAATa                             >  1:4571889/1‑128 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATATTGGAAATTTAAATTTTAGTTTTTTTTTTTTATAATTATTTAAAAAAATATAAAGTAAAAATTATTTTTaaatttattaa                            >  1:3560305/1‑120 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑T‑TAATGTAAAATTAAATTTTAGGTTTTTTGTTTTATATTTTTTTAAAAAAATAAAAAGTAAAAATTATTTTTAAATTTAATaat                           >  1:1402142/1‑126 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTT‑TATAATGGAAAAATAAATTTTAGTTATTTTTTTGTATAAGTTTATAAAAAAATTTAAAGGAAAAAATTATTTTAAAATTaaaaata                          >  1:1963196/1‑123 (MQ=255)
                                                                                                       ttaattTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TATATTGTAAATATAAATTTTAGGTTTTTTTTTTTATAATTATCTAAAAAAATATAAAGGAAAAAATATTTTTAAAATTAATaat                           >  1:6628836/1‑126 (MQ=255)
                                                                                                       ttaattTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TATAATGTAAATATAAATTTTATTTTTTTTGTTTAATAATTAAATAAAAAAATAAAAAGAAAAAAATATTTTAAAAATTaaaaaa                           >  2:2368391/1‑124 (MQ=255)
                                                                                                       ttaattTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGTAAATATAAATTTTAGTTTTTTTTTTGTAAAATTATATAAAAAAATAAAAAGTAAAAATTTTTTTTAAAATTAataata                          >  2:2514159/1‑128 (MQ=255)
                                                                                                       ttaattTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAATTTTCTAAAAAAATAGAATGGAAAAAATATTTTTAAAATTAATACTaa                         >  1:5840260/1‑128 (MQ=255)
                                                                                                         aatattaaattGAAAAAAATA‑GA‑TTTTTTTTTATTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTaa                         <  2:1533692/119‑1 (MQ=255)
                                                                                                          attTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGTAAATATAATTTTTAGGTATTTTTTTTTCTAATTTTATAAAAATTTATAAAGGAAAAATTTTTTTTTAAATTAATATTaaaa                       >  1:1152955/1‑128 (MQ=255)
                                                                                                          agttGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATTTTGTAAATTTAATTTTTTTGTTTTTTTTTTTATAATTTTAAAAAAAATTTAAAAGAAAAAAATTTTTTTAAaataaataaataaa                       >  1:6389436/3‑122 (MQ=255)
                                                                                                            ttGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TAAAATTTAAATATAATTTTTTTTTTTTTTTTTTTATATTTATAAAAAAAAATATAAATTAAAAAATTTTTTTAAAAATAATAATAAAatt                     >  1:1299393/1‑128 (MQ=255)
                                                                                                               aaCTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑TATAATGTAATTATAAATTTTATTTATTTTTTTGTATATTTATATAAAAAAATATAAAGTAAAAAATATTTTTAAAATTATAACTAAAattatt                  >  1:1846109/1‑128 (MQ=255)
                                                                                                               aaCTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTT‑AATAATTGAAATATAATTTTTAGGTATTTTTTTATATAATTATATAAAAAAATATAAAAAAAAAAATATTTATAAAAATAATAATAATattatt                  >  1:2441157/1‑128 (MQ=255)
                                                                                                                aattttAAAAAATA‑‑T‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                 <  2:719211/123‑1 (MQ=255)
                                                                                                                 cTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTT‑TATAATGTAAATATAAATTTTTGGTTTTTTTTTGTATAATTTTATAAAAAAATAAAAATGAAAAATTATTTTTAAAAGTAATAGTAAAtttatt                  >  1:542858/1‑128 (MQ=255)
                                                                                                                 cTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑T‑TAATGTAAATATAAATTTTAGGTTTTTTTTTGTATAATTATATAAAAAAAAAAAAAGTAAAAAATATTTTAAAAATTAATAAAAAAATTATTTa                >  2:5712140/1‑128 (MQ=255)
                                                                                                                    gTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑T‑TATTTGAAAAATAAATTTTTTTTTTTTTTTTTTTAAATTTTTAAAAAAAAAATAAATAAAAAAATATTTTTAAAATATATAAAAAAATTATTTAATg             >  1:2785030/1‑128 (MQ=255)
                                                                                                                     tAAAAAATA‑‑T‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGt            <  2:2013164/128‑1 (MQ=255)
                                                                                                                      tttaaaaatttttttttttttttttttttt‑tATAATGGAAATATATATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt              <  1:3456019/116‑1 (MQ=255)
                                                                                                                       ttttaaaaatttttttttttttttttttt‑tATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg             <  2:3118513/117‑1 (MQ=255)
                                                                                                                       tttaaaaatattttttttttttttttttt‑tATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg             <  2:2274056/117‑1 (MQ=255)
                                                                                                                         ttaataaattttttttttttttttttt‑tATAATTGAAATATAAATTTTATGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAATTAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtt           <  1:495696/119‑1 (MQ=255)
                                                                                                                            tA‑GC‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAAATTAAATTTTTGGTTTTTTGTTTTATAATTAAATAAAAAAATATAATGTAAAAAATATTTTAAAATATAATAAAAAATTTTTTTATTTttaaata      >  2:6221691/1‑128 (MQ=255)
                                                                                                                             a‑GC‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTATGTATTTTTTTGTATATGTATCTAAAAAAATATAAAGGAAAAAATATTTTTAAAAGTAATAAAAAATTAATTTAATTttaattaa     >  1:5257075/1‑128 (MQ=255)
                                                                                                                              attttttttttttttttttttt‑tATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta      <  2:2918874/124‑1 (MQ=255)
                                                                                                                              aaattttttttttttttttttt‑tATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta      <  1:1716922/124‑1 (MQ=255)
                                                                                                                                  tttttttttttttttttt‑tATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAc  <  1:5565593/128‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                
ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑TATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑