Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.53.2% 575.3 / inf 637intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (54/213);  new base . (168/136);  total (260/377)
Fisher's exact test for biased strand distribution p-value = 3.57e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.81e-13

Only 100 of 679 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202358‑202612
                                                                                                                                 |                                                                                                                              
 aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCAtta                                                                                                                               >  2:5554087/1‑127 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAA‑AATCACCttaa                                                                                                                              >  1:5553998/1‑126 (MQ=255)
       tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAAAT‑AAAAAAAAACAATCCCAttaaaaatt                                                                                                                         >  2:5787597/1‑121 (MQ=255)
           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCCC‑‑Ttaaaaattaaaa                                                                                                                   >  2:2503224/1‑128 (MQ=255)
            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCtt‑‑‑aaaaataaaaaa                                                                                                                 >  2:5085059/1‑128 (MQ=255)
            aaaataTAATTAATGTTAATTAAAATACCATAAAATTAAA‑AATTATATAAAAGTATAACCATTTTATATAATTTTTTATTTTTTTATCTTCACAAA‑AAAAAAAAAAAAATCCCC‑‑Ataaaaattaaaaa                                                                                                                  <  1:193168/126‑1 (MQ=255)
              aataGAGTTAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGAGATCTATTTATTTATATTTTTATCTTAACAAAT‑AAAAAAAAACAATCCACTT‑‑‑AAAAATaaaaaaaa                                                                                                               >  2:4622700/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTAATAATGTATATACACTTGATCTATTTTTTTATATTATAATCTTCACAAAT‑AAAAAAAAACAATAAAC‑‑TAAAAAAATaaaaaaaaa                                                                                                              >  2:1681779/1‑128 (MQ=255)
                    gTTAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                          >  2:6348724/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAA‑AATACCC‑‑ATAAAAATTaaaaaaaaaaaaaa                                                                                                         >  1:5422183/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAA‑AATAACC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                         >  2:3728123/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                        >  1:1599810/1‑128 (MQ=255)
                       tattttaatttaAATAAAATAAAAATTAT‑AATTATTTTAAATTAAATACTATTTTTATATTTTTTTTTTTTTTTA‑ATATAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                       <  1:408074/124‑1 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATACCC‑‑TTAAAAAATaaaaaaaaaaaaaaaa                                                                                                       >  2:1325188/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAT‑‑CCAATTAAAAATTaaaaaaaaaaaaaaaa                                                                                                       >  1:761184/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAA‑AATCAAATT‑‑‑AAAAATaaaaaaaaaaaaaaaaa                                                                                                      >  2:3019414/1‑128 (MQ=255)
                        agtttaattaaAATAAAATAAAATTTATAAATGTTTATAAT‑TTTATCCTCTTGTTCTTTTTTTTTTTTTTTTTTTATTTACAAATAAAAAAAAAAAAAACCC‑‑TTT‑AAAAATaaaaaaaaaaaaaaaaa                                                                                                      <  2:6215405/125‑1 (MQ=255)
                        aGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                      >  2:6598191/1‑128 (MQ=255)
                        aGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                      >  2:834459/1‑128 (MQ=255)
                        aGGTTAATTAAAAAAACATAAAATTAAT‑AATTATAATAATTTATATACTCGTTATATATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                      <  1:2227384/128‑1 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAA‑AATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                     >  2:6070883/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                     >  2:5870503/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                     >  2:758814/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaaaa                                                                                                    >  1:5486111/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                     >  2:5263761/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                     >  2:5194456/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTAACTTCACAAATAAAAAAAAAACAAAACC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                      >  1:5265623/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAAT‑AAATATTATAATGTAGATCCTCGTGATCTATTTTTTTATATGATTATCTTCACAAAT‑AAAAAAAAACAAAACCC‑‑TTAAAAAATaaacaaaaaaaaaaaaaa                                                                                                     >  2:1142101/1‑128 (MQ=255)
                         ggTTAATTAAAATACCAT‑AACTTAAT‑AATTCTTATAATGTATATCATCTTGATCTATTTATTTATTTATTAATCTTAAAAAATAAAAAAAAAAAAA‑‑‑AAAATT‑AAAAATaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:3889322/1‑128 (MQ=255)
                          gTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTAGTTATCTATTTTTTTATTTGTTTATATTCTCAAATAAAAAAAAAAAAA‑‑CAC‑ATAAAAAAATaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:3433574/1‑128 (MQ=255)
                           ttaattaaAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:3536836/1‑128 (MQ=255)
                           ttaattaaAAAACCAAAAAATTAAT‑AATTATTTTAAATTAGATACCCGTTTTATATTTTTTTTTTTTTTTTTTATAACAAATAAAAAAAAAA‑AATCCCC‑‑ATAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                                   <  2:4956182/128‑1 (MQ=255)
                            taattaaAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:5315276/1‑128 (MQ=255)
                            taattaaAATAACATAAAATTAAT‑AATTATTATAATTTATAAACACGTTTTATATTTTTTTTTTTTTTTAAATTCACAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                                  <  1:613955/128‑1 (MQ=255)
                             tattaaAAAACAATAAACTTAAT‑AATTATTATAATTTAAATACTATTTATATATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaac                                                                                                  <  1:3081529/127‑2 (MQ=255)
                             aattaaAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTATTATATTCACAAAT‑AAAAAAAAACAAT‑‑AAAATTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:4188229/1‑127 (MQ=255)
                             aattaaAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:2840015/1‑127 (MQ=255)
                             aaataaAAAACAATAAACTAAAA‑AAATATTAAAAATTATAAACTCGTTATATATTTTTTTAATTCTTAAAAATCACAAATAAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaac                                                                                                  <  1:370909/125‑2 (MQ=255)
                              attaaAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:5605497/1‑126 (MQ=255)
                              attaaAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGAGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAACAATCAAC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:235494/1‑126 (MQ=255)
                               ttaaAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAAACC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:1930079/1‑125 (MQ=255)
                               ttaaAATACAATAAACTTAAT‑AATTCTTATAATGTATATACTCTTAATCTATTTTTTTATTTTTTTATATTAACAAATAAAAAAAAAAAAAACAC‑‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:3859172/1‑125 (MQ=255)
                                taaAATACCATAAACTTAAA‑AAATATTAAAATTTAGAACCTCGTGATCTTTTTTTTTATTTGTTTATATTAACAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTaaa                                                                                             <  1:6316605/128‑1 (MQ=255)
                                 aaaaatcaaTAAAATTAAT‑AATTATTATAATTTATATAATAGTTATATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTaaa                                                                                             <  1:5742862/120‑1 (MQ=255)
                                 aaaaaaACATTAACTAAAT‑AATTAATATAAATTAGAACCTCGTTTTATAATTTTTTTTTTTTTTATAATAACAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaactaa                                                                                             <  1:4436808/128‑6 (MQ=255)
                                 aaaaTACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:6136106/1‑124 (MQ=255)
                                 aaaaTACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTATTTATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAA‑AATAACC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  1:1003267/1‑123 (MQ=255)
                                 aaaaTACCAAAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATATTCAAAAAT‑AAAAAAAAACAATACCCTTAAAAATaaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:4104281/1‑125 (MQ=255)
                                   aaTAACATATAATTAAT‑ATTTTTTTTATTGTTGATTATTGTGATATTTTTTTTTTTTTGTTTTTATTAAAAAAATAAAAAAAAAAAATACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaactaaaaaca                                                                                            <  2:1601709/128‑10 (MQ=255)
                                     tACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑Taaaaaaaa                                                                                        >  2:2143387/1‑128 (MQ=255)
                                        cATAAACTTAAT‑AATTATTAAAATGTATTTCCTCGTGATTTATTTTTTTATTTGTTTAAAATCACAAAT‑AAAAAAAAACAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                   <  1:5391581/128‑1 (MQ=255)
                                          ataaattAAT‑AATTATTATAATGTTTAATCTTGTTATATATTTTTTTATTTTTTAATATTAAAAAATAAAAAAAAAAAAAACCC‑‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  2:5451092/123‑1 (MQ=255)
                                           aaaaataat‑aaTTATTAAAATTTATAACCTCGTGATCTATTTTTTTATTTTTTTAACTTAACAAAT‑AAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  1:6551888/123‑1 (MQ=255)
                                           aaaaTTAAT‑AATTAATATAATTTTAATACTCTTTATTAATTTTTTTATTTTTTTAAAAT‑AAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  1:6382208/128‑1 (MQ=255)
                                           aaaCATAAT‑AATTCATAAAAAGTACATACTCGTTTTCTATTTTTTTATTTTTTTATATTCA‑AAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  1:3581023/128‑1 (MQ=255)
                                              actataaaatTATTAAAATATATATACACGTGTTCATTTTTTTTATATTTTTTTAATAACAAA‑AAAAAAAAAAAAATCCCCTTT‑‑AAAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                                <  1:6074647/121‑1 (MQ=255)
                                               ataat‑aaTTATTAAAATTTATATACACTTGATATATTTTTTAATTTGTTTATATAAACAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                              <  1:2731440/127‑1 (MQ=255)
                                                taat‑aaTTATTAAAATTTATATAATCTTTATCTATTTTTTTATTTGTTTAAATTAACAAAT‑AAAAAAAAACAATACCC‑‑ATAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                             <  1:2420607/128‑1 (MQ=255)
                                                taaa‑aaTTTTTAAAATTTATATACTCGTTATTTATTTTTTTATTTTTTTATAATCAAAAAAAAAAAAAAAAAAAACCC‑‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                              <  2:3571982/128‑1 (MQ=255)
                                                 aat‑aatTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑‑TAAAAAAAAACTCTAttaaataa                                                                          >  2:3342805/1‑122 (MQ=255)
                                                 aat‑aatTATTTAAATGTATATCCTCGTGTTTTATTTTTTTATTTTTTTATATTCAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                           <  1:5803255/128‑1 (MQ=255)
                                                       ttCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAACAACATAATTTTCTTaaatt                                                                       >  2:5999979/1‑126 (MQ=255)
                                                       atattAAAATTTATATACTCGTGATATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                          <  1:5118693/125‑1 (MQ=255)
                                                           tataATGTATATACTCGTTATATATTTTTTTATTTGTTTATATTAACAAA‑AAAAAAAAAAAAAACCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTccc                                                                   <  1:6245234/128‑1 (MQ=255)
                                                                  tacaaactattGATATATTTTTTTATTTTTTTATCTTAACAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                            <  1:1765303/118‑1 (MQ=255)
                                                                     atcattttGATCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                       <  2:6243328/121‑1 (MQ=255)
                                                                         ttgttatttatttttttattttttTATCTTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:5492680/120‑1 (MQ=255)
                                                                         tatttttatatttttttattttttTATATTAAAAAATAAAAAAAAAA‑AAT‑‑ACAATTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:3966702/120‑1 (MQ=255)
                                                                          tttGATATATTTTTTTATTTTTTTAT‑ATAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:5409584/126‑1 (MQ=255)
                                                                          ctgtttatttttttttATTTTTTTTAATTAAAAAATAAAAAAAAAA‑TATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:571503/119‑1 (MQ=255)
                                                                          cGTTATTTATTTTTTTTTTTGTTTA‑ATTAAAAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:2075370/128‑1 (MQ=255)
                                                                          attgtataaTTTTTTTATTTGTTTAACTTAACAAA‑AAAAAAAAAAAAAACCCCAT‑‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:3519773/120‑1 (MQ=255)
                                                                           gttatatATTTTTTTAATTTTTTAAATTAAAAAATAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  1:1331907/122‑1 (MQ=255)
                                                                           ctttaatattttttatttttTTTATTTTTA‑AAAAAAAAAAAAAAAAAT‑‑ATATTTAAAATATAAAAATAATAAAAAAATAAAAATATAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:4667508/122‑1 (MQ=255)
                                                                           ctGATCTATTTTTTTATTTGTATATCATAAAAAATAAAAAAAATA‑AATACCCTT‑‑‑ATAAATTAAAAAAAAAAAAAAAATATACTAAAAACATACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                   <  1:2568313/127‑1 (MQ=255)
                                                                              attaaTTTTATTAATTGTTTATGATCACAAAAAAAAAAAAAAAAAACCC‑‑TATAAAAATT‑‑‑‑‑‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  2:2256873/124‑1 (MQ=255)
                                                                                ttATTTTTTTTTTTGTTTATAATTA‑AAAAAAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  1:235494/127‑1 (MQ=255)
                                                                                tatattttttttttttttttATTCAAAAATAAAAAAAAAA‑AATCCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  2:431668/124‑1 (MQ=255)
                                                                                  tattttttATTTTTTTAAATT‑AAAAAAAAAAAAAAAAAAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  1:5922997/126‑1 (MQ=255)
                                                                                   tttttttATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAAAACTTTTTATAAAAATAACAAATTAAACCAAAATTTATTTTTaa                                           >  2:5646504/1‑128 (MQ=255)
                                                                                   tttttttATTATTTAATATT‑AAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                           <  1:4914670/128‑1 (MQ=255)
                                                                                    ttttttATATTTTTATATT‑AAAAAAAAAAAAAAAACAATCACATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                          <  1:295305/128‑1 (MQ=255)
                                                                                    tttattTTTTGTTTATATT‑AAAAAAATAAAAAAAAAAATCAC‑‑ATTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                          <  2:1778018/128‑1 (MQ=255)
                                                                                        ttATTTTTTTATATTAAAAATTAAAAAAAAAAAAA‑‑‑CCATTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                       <  1:3165344/128‑1 (MQ=255)
                                                                                        ttATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  1:1463743/128‑1 (MQ=255)
                                                                                         tATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATAACC‑‑‑TAAAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                    <  2:3110920/128‑1 (MQ=255)
                                                                                          aTTTGTTTATCTTCACAAAAAAAAAAAAAAAAAACCAAT‑‑‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                    <  1:815856/128‑1 (MQ=255)
                                                                                              ttttATTTTAACAAA‑AAAAAAAAAAAAAT‑CCCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                  <  1:5315276/127‑1 (MQ=255)
                                                                                               tttaaaatCACAAA‑AAAAAAAAAAAAATCCCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                              <  1:4528628/121‑1 (MQ=255)
                                                                                               tttATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAAAAATATTTCTTAAAATTCAAAATTATAACAAATTTTATTTTTAAAATAATAAATTTAc                             >  1:4970571/1‑128 (MQ=255)
                                                                                                  ttataataaaaaaaaaaaaaaaaaaaaaCCATTT‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                               <  1:6424999/120‑1 (MQ=255)
                                                                                                  tatatttaaaaaaaaaaaaaaaaaATTCCCAT‑‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  1:1667056/120‑1 (MQ=255)
                                                                                                  tatataaaaaaaaaaaaaaaaaaaaaaaCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  2:5338097/120‑1 (MQ=255)
                                                                                                   tCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATAATTATAAAAATAAAAATTTAAAAAAAAATTTATTTTAAAAATAATATAtttaaat                           >  1:3311988/1‑123 (MQ=255)
                                                                                                    tattcaaaaaaaaaaaaaaaCAAACCCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                          <  2:5031106/122‑1 (MQ=255)
                                                                                                      tCAAAAATAAAAAAAAAA‑AATACC‑‑ATTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                        <  1:671262/128‑1 (MQ=255)
                                                                                                        acaAATAAAAAAAAAA‑AATCCCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                     <  1:5057318/128‑1 (MQ=255)
                                                                                                                aaaaaaaaaaATCACC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                 <  1:6011964/128‑1 (MQ=255)
                                                                                                                   aaaaaCAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACAATATTTATTAAAATTCAAATTTATAACAAATTTTATTTTTAAAAAAATAAATTTAAaaaataattataaatta            >  2:6480724/1‑117 (MQ=255)
                                                                                                                      aaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACTATATTTATTAAAATTACCAATAAAAACAAAATTTATTATAAAAATAATAAATTTAAATAATATATATCTAataaaa         >  1:4315646/1‑125 (MQ=255)
                                                                                                                                 |                                                                                                                              
AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAAT‑AATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202358‑202612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑