Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4880T.38.2% 702.1 / inf 629intergenic (+266/‑409)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (190/168);  new base . (40/181);  total (252/377)
Fisher's exact test for biased strand distribution p-value = 1.59e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.27e-06

Only 100 of 689 total aligned reads displayed.

TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTA  >  CP016816/202367‑202614
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tAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑Ttaaa‑aaat‑aa                                                                                                                       >  2:5017227/1‑128 (MQ=255)
  aataatAGAGTTAAGTTTAATTAAAATACCATAAACTTAATAAATCTTATAATGTACATCCTCGTGATCTATTTTTATATATTTTTATCTTCACAAA‑AAAAAAAAAACAAAAACC‑‑Ttaaa‑aaat‑aaaa                                                                                                                     >  2:3284851/1‑128 (MQ=255)
  aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑Ttaaa‑aatt‑aaaa                                                                                                                     >  1:5767706/1‑128 (MQ=255)
     aataGTGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAA‑AATT‑aaaaaaa                                                                                                                  >  2:3715898/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCAACTT‑‑‑AA‑AAAT‑aaaaaaaaaa                                                                                                               >  1:3258140/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑‑TAAA‑AAAT‑taaaaaaaaa                                                                                                               >  2:1996230/1‑128 (MQ=255)
          agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTATATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCAAC‑‑TTAAA‑AATT‑aaaaaaaaaaaa                                                                                                             >  1:2038790/1‑128 (MQ=255)
           gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑aaaaaaaaaaaaaa                                                                                                           >  1:6012243/1‑128 (MQ=255)
           gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAA‑AATT‑aaaaaaaaaaaaa                                                                                                            >  2:6348724/1‑128 (MQ=255)
            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑ATAAA‑AATT‑aaaaaaaaaaaaaa                                                                                                           >  1:3495635/1‑128 (MQ=255)
            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTAAAAAATTAAATCATCGTGATCTATTTTTAAATATTATTATCTTCAAAAATAAAAAAAAAA‑AATAAC‑‑AATAAA‑AAAT‑aaaaaaaaaaaaaa                                                                                                           >  2:1198286/1‑128 (MQ=255)
             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                          >  2:5090719/1‑128 (MQ=255)
              aattttaattaaAATAACAAAAACATAATAATTTTTATAATTTATTATCTCGTGATTTTTTTTTTTTTTTTTTTATTTTAACAAATAAAAAAAAAA‑AATACCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaa                                                                                                         <  2:1606541/124‑1 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACACCAT‑‑‑AA‑AAAT‑aaaaaaaaaaaaaaaaa                                                                                                        >  2:6254655/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAA‑AAAAAAAAAACAATCCCCTTAaaaa‑aaaa‑aaaaaaaaaaaaaa                                                                                                           >  2:1683567/1‑128 (MQ=255)
               aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                        >  2:6598191/1‑128 (MQ=255)
               aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                        >  2:834459/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaa                                                                                                       >  1:45737/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaa                                                                                                       >  2:5411575/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAA‑AATT‑aaaaaaaaaaaaaaaaaa                                                                                                       >  2:758814/1‑128 (MQ=255)
                ggTTAATTAAAATACAAAAAAATTAATAATTCTTATAATTTATATCCTCGTGTTCTTTTTTTTTTTTTTTTTATCATAACAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaa                                                                                                       <  1:5593111/128‑1 (MQ=255)
                  ttaattaaAATACCATAAACTTAATAATTCTTATAATTTAGATCAACTTTATATAATTATATATAAAAAAATATTAAAAAATAAAAAAAAAA‑AAT‑‑‑CAAAAAAA‑AAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:26926/1‑128 (MQ=255)
                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCAAC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:6074647/1‑128 (MQ=255)
                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATACCC‑‑ATAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:5271334/1‑128 (MQ=255)
                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTAATTTTTTATTTATATATATTCACAAAT‑AAAAAAAAACAAAAAACTTAAAAA‑Taaa‑aaaaaaaaaaaaaaaaaaa                                                                                                      >  2:4580865/1‑128 (MQ=255)
                     attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCAC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:2196970/1‑126 (MQ=255)
                      ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:5882116/1‑125 (MQ=255)
                      ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAA‑AATAAAC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:2393185/1‑125 (MQ=255)
                      ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTATTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAA‑AATAAACTTAAAAA‑Taaa‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:3846403/1‑127 (MQ=255)
                       taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑‑TAAA‑AAAT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:6216569/1‑123 (MQ=255)
                       taaAATACCATAAACTTAATAATTATTATAATGTAGATCATCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:3759719/1‑124 (MQ=255)
                       taaAATACCATAAACTTAAAAAATATTAAAATTTAGAACCTCGTGATCTTTTTTTTTATTTGTTTATATTAACAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTaaa                                                                                               <  1:6316605/128‑1 (MQ=255)
                        aaaataaaataaaatTAAATATTATTATAATTTATAACCTTGTTATCTATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaactaaaaac                                                                                               <  1:1883182/128‑9 (MQ=255)
                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:6136106/1‑124 (MQ=255)
                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaataa                                                                                               >  2:5789904/1‑123 (MQ=255)
                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAATTTATCTTCACATAT‑AAAAAAAAACAAAACCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:2946053/1‑123 (MQ=255)
                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTATTTATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAA‑AATAACC‑‑TTAAA‑AAAT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:1003267/1‑123 (MQ=255)
                        aaaaTACCAAAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATATTCAAAAAT‑AAAAAAAAACAATACCCTTAAAAA‑Taaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:4104281/1‑125 (MQ=255)
                         aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:4957368/1‑128 (MQ=255)
                          aaTACCATAAAATTAATAAATTTTATAATGTATATACTTGTTATATTTTTTTTTATTTTTTTATATTAACAAATAAAAAAAAAA‑AATACCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                           <  2:2341535/128‑1 (MQ=255)
                           attacATAAAATTAAAATATCTTATAATGTATATACTCTTTATCTATTATTTTATTTTTTTATCTTAAAAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                           <  1:3025391/124‑1 (MQ=255)
                            tataaTAAAATTAATAATTATTATAATTTATATCCTTGTTTTTTATTTTTTTTTTTTTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                          <  2:1819405/124‑1 (MQ=255)
                            taacaaaaaaataataaTTCTTATAAATTATTAACTCGTTTTTTATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                          <  1:3903601/117‑1 (MQ=255)
                            taaataaaaaTTAATTATTATTATAATTTATATAATTGTTATAATTTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCC‑‑TTT‑AA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                           <  1:6436430/122‑1 (MQ=255)
                                 ataaattAATAATTATTATAATGTTTAATCTTGTTATATATTTTTTTATTTTTTAATATTAAAAAATAAAAAAAAAAAAAACCC‑‑‑TTAAA‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                    <  2:5451092/123‑1 (MQ=255)
                                  aaaaataataaTTATTAAAATTTATAACCTCGTGATCTATTTTTTTATTTTTTTAACTTAACAAAT‑AAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                    <  1:6551888/123‑1 (MQ=255)
                                  aaaaTTTATAATTATTTTAATTTATTTCATCTTTTTTTATTTTTTTTTTTGTTTTTTTTAAAAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                    <  2:5346603/128‑1 (MQ=255)
                                  aaaaTTAATAATTATTATAATTTAGTACATCGTTATCTATTTTTTTATTTGTTTATATT‑AAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                   <  2:5325973/128‑1 (MQ=255)
                                     tttAAAAATTTTTATAATTTATATCCTAGGTATAATTTTTTTTATTTTTTTATATTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                <  2:4302651/127‑1 (MQ=255)
                                      taaatattTTTTAAAATTTATTTCATCTTTATATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                                 <  1:61431/126‑1 (MQ=255)
                                       taataaTTCTTATAATTTAGATCCTAGGTATCTTTTTTTTTATTTGTTTAACTTCACAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                               <  1:5681947/128‑1 (MQ=255)
                                       taaaaaTTTTTAAAATTTATATACTCGTTATTTATTTTTTTATTTTTTTATAATCAAAAAAAAAAAAAAAAAAAACCC‑‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                <  2:3571982/128‑1 (MQ=255)
                                           aatTATTATAATTTATAACATTTTTATATATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATACCCAT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                           <  1:144541/128‑1 (MQ=255)
                                            attattATAATTTATATAATCTTTATATATTTTTTTATTTGTTTTTCTT‑AAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                         <  1:4485262/128‑1 (MQ=255)
                                            atTCTTATAAATTATATCATCTTTATCTATTTTTTTAATTTTTTATATTCAAAAATAAAAAAAAAA‑AAACCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                           <  1:5429420/128‑1 (MQ=255)
                                              tCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAA‑‑TAAAAACAAACAATATTTATTAAAATTcc                                                                      >  1:833599/1‑128 (MQ=255)
                                              tCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACACAAATTAATAAAAtaac                                                                      >  1:5400825/1‑125 (MQ=255)
                                                 tataATGTATATACTCGTTATATATTTTTTTATTTGTTTATATTAACAAA‑AAAAAAAAAAAAAACCCCAT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTccc                                                                     <  1:6245234/128‑1 (MQ=255)
                                                 tataAATTAGATACTATTTATATATTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                    <  2:4827969/128‑1 (MQ=255)
                                                        tataTCCTCTTGTTCTTTTTTTTTAATTTTTTATATTAAAAAATAAAAAAAAAA‑AATTCCCTTAAAAATTAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                                  <  1:6086729/125‑1 (MQ=255)
                                                            accTAGTTATATATTTTTTT‑TATTTTTATAATTAAAAAAAAAAAAAAAAAAAACCC‑‑ATTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                           <  2:305987/127‑1 (MQ=255)
                                                            aatatattaaatatttatttattTTTTTTTTTTTAAAAATTAAAAAAAAAAAAT‑‑TAATTTAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                            <  1:2473989/117‑1 (MQ=255)
                                                              ctagttatatataTTTTTATTTTTTTATCTTCACAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                        <  1:5848661/119‑1 (MQ=255)
                                                              atatttatatatttttttattttttTATATTAAAAAATAAAAAAAAAA‑AATCCCC‑‑TTAAA‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                       <  1:3124613/119‑1 (MQ=255)
                                                               tttttttttatttttttattttttTATATTAACAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                       <  1:5508246/120‑1 (MQ=255)
                                                               ttgttatttatttttttattttttTATCTTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                      <  2:5492680/120‑1 (MQ=255)
                                                                 ggtatatatttttttattttttTATATTTA‑AAAAAAAAAAAAAAAAATCCCATT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                     <  2:5236276/122‑1 (MQ=255)
                                                                    atatttttttttATTTGTTTA‑ATTAAAAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                  <  2:5662517/123‑1 (MQ=255)
                                                                      taaTTTTTTTATTTGTTTAAATT‑AAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                               <  1:4422611/126‑1 (MQ=255)
                                                                        ttttttttATTTTTTTTTAATAAAAAAAAAAAAAAAAAAAAACCC‑‑‑TT‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                              <  1:5017227/127‑1 (MQ=255)
                                                                        atttttttatttttttATATTAAAAAAT‑AAAAAAAAACAATCACCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                             <  1:4713289/128‑1 (MQ=255)
                                                                         tttttttatttttttaTATTAACAAATAAAAAAAAAA‑AATACCCTT‑‑‑AA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                             <  1:427011/128‑1 (MQ=255)
                                                                           tttttATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATACACTT‑‑‑AA‑AAAT‑TTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                           <  2:2490181/128‑1 (MQ=255)
                                                                            ttttATTTTTTTATATAAAAAAAT‑AAAAAAAAACAATCCC‑‑ATTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                           <  1:1664023/128‑1 (MQ=255)
                                                                             tttATTTTTTTTTATT‑AAAAAAAAAAAAAAAAAAATAAAC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                         <  1:3542851/128‑1 (MQ=255)
                                                                                aTTTTTTTAT‑TTTAAAAAAAAAAAAAAAAAAATAACC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                       <  1:128032/128‑1 (MQ=255)
                                                                                 ttttttTATATTTAAAAAAAAAAAAAAAAAAAACCC‑‑‑ATAAA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                      <  1:1595041/128‑1 (MQ=255)
                                                                                  ttttttATCTTAAAAAAAAAAAAAAAAAAAAACCC‑‑‑TT‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                    <  1:529037/125‑1 (MQ=255)
                                                                                  ttttttATATTAAAAAATAAAAAAAAAA‑AATACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATATCACATTTTATTTTTAAAATAAGata                                    <  1:4113760/125‑1 (MQ=255)
                                                                                     ttttatattaaaaaaaaaaaaaaaaaaATACCC‑‑ATAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                  <  1:521521/117‑1 (MQ=255)
                                                                                       ttaataaaaaaaaaaaaaaaaaaaaATTCCC‑‑ATAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                <  1:2322229/119‑1 (MQ=255)
                                                                                       tatatttaaaaaaaaaaaaaaaaaaATCCCATT‑‑‑AA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                               <  1:5085059/119‑1 (MQ=255)
                                                                                           ataaaaaaTAAAAAAAAAAAAAT‑CCCTTTTAAT‑TAAT‑‑AAAAAAAAAAAAAAAATAAACTAAAAACACACTCTATTTCTAAAAATACCCTATTAAACCACATTTTATTTTTAAAATAAGATATTGACat                             <  1:3425972/123‑1 (MQ=255)
                                                                                           ataaaaaaTAAAAAAAAAA‑AATACAC‑‑TTATA‑AATT‑ATAAAAAAAAAAAAAAAAAAACTAATTACAAAATATATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                            <  1:2627758/123‑1 (MQ=255)
                                                                                            tCAAAAATAAAAAAAAAA‑AATACC‑‑ATTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                          <  1:671262/128‑1 (MQ=255)
                                                                                               caAATAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                         <  1:2164567/128‑1 (MQ=255)
                                                                                                  aataaaaaaaaaCAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACAATATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAAAAATATATTGAAATAatatata                     >  1:6391796/4‑128 (MQ=255)
                                                                                                    taaaaaaaaaCAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACACAATTTCTTAAAAATACCAATTAAACCACAATTTATTTTAAAAATAAGATATTAAAATAatatatata                   >  1:5932381/2‑127 (MQ=255)
                                                                                                    aaaaaaaaaaaaATACC‑‑ATTAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatat                    <  1:2824503/128‑1 (MQ=255)
                                                                                                     aaaaaaaaaaaaTTCCC‑ATTAAA‑AATT‑AAAAAATAAAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatat                    <  2:3458387/128‑1 (MQ=255)
                                                                                                     aaaaaaaaaCAAAACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAACACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                   <  1:764535/128‑1 (MQ=255)
                                                                                                         aaaaaCAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACAATATTTATTAAAATTCAAATTTATAACAAATTTTATTTTTAAAAAAATAAATTTAAaaaataattataaatta              >  2:6480724/1‑117 (MQ=255)
                                                                                                           aaaCAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAAAAATATTTCTAAAAATTCACTAAAAAACCAAATTTTAATTTTAAAATAAAATATTTACAAAaaatatataaaaaaaa            >  1:396758/1‑120 (MQ=255)
                                                                                                               aaaaacaccataaa‑aaat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat           <  2:1326074/118‑1 (MQ=255)
                                                                                                                acaaacccctaaa‑aaat‑‑taaaaaAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat         <  2:5720784/119‑1 (MQ=255)
                                                                                                                aaatacccttaaa‑aattaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat           <  1:5356098/120‑1 (MQ=255)
                                                                                                                  caccccttATA‑AATT‑AAAAAATAAAAAAAAAAAAAACTAAACACAAACTCTATTTCTTATAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata        <  2:6022799/122‑1 (MQ=255)
                                                                                                                      ccttAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc    <  2:5553998/126‑1 (MQ=255)
                                                                                                                       cttaaa‑aattaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc    <  1:3649180/127‑1 (MQ=255)
                                                                                                                       attaaa‑aatt‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt   <  1:1757150/127‑1 (MQ=255)
                                                                                                                         |                                                                                                                                
TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTA  >  CP016816/202367‑202614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑