New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 203895890 (0.230)556 (0.130)
+TTT		 107/214 16.2 35.7% intergenic (+279/+179) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
?CP016816 203896 = 1032 (0.230)intergenic (+280/+178) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1740 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAA  >  CP016816/203768‑204024
                                                                                                                                       |                                                                                                                                     
 ttAATTTTTTTTTTAAAAAAAAAAAAAAATTTTTTATTTAAAGACATTTGTTAAAAAGCCTATGTGCTAGGGTTTTTATTAT‑ACTTATCAAAAATACAACGCTTTCAAATTGTA‑TTTTTTAGGC‑‑TTG‑‑‑t                                                                                                                                       <  2:5421005/128‑1 (MQ=255)
  tAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑tt                                                                                                                                      >  1:7339792/1‑128 (MQ=255)
  tAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑tt                                                                                                                                      >  1:8694182/1‑128 (MQ=255)
  tAATTTTTTTTATAAAAAAAAAAAAAAAATTTTAATTTAAATCCATTTTTAAAAAATCCTTTTTTCTTGGCTTTTTTTTAT‑AATTATCAACAATAAAACGCTTTAAAATTGTA‑TTTTTTAGGC‑‑TTG‑‑‑tt                                                                                                                                      <  2:6086101/128‑1 (MQ=255)
      tttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑tttt‑‑tt                                                                                                                                >  2:5024867/1‑128 (MQ=255)
       ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑tttt‑‑ttt                                                                                                                               <  1:8439268/128‑1 (MQ=255)
       ttttttAT‑AAAAAAAATTAAAATTTTTCATTTAAAGCCTTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTTT‑ACTTATCAACATTACACCGCTTTCAAAGTGTA‑TGTTTTATGC‑‑TTG‑‑‑tttt‑‑tttt                                                                                                                              >  1:6108204/1‑128 (MQ=255)
        ttattATAAAAAAAAAAAAAAATTTTTCATTTAAAGCAATTTTTAAAAAACCCTATGTTCTAGGCTTTTTAATAT‑ACTTATCAACATTAAAACGCTTTAAAAGTTTA‑TTTTTTAGGC‑‑TTG‑‑‑tttt‑‑tttt                                                                                                                              <  2:2883795/125‑1 (MQ=255)
             ataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTATGCTTTTTATTAT‑ACTTATCAACAATACAACGCTTTCAAAGTGTT‑TTTTTTAGGC‑‑TTG‑‑‑tttt‑‑ttttttttt                                                                                                                         <  1:1114570/128‑1 (MQ=255)
             ataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑tttt‑‑ttttttttt                                                                                                                         >  1:3471247/1‑128 (MQ=255)
             ataAAAAAAAATAAAAATTTTTAATTTAAATAAATTTTTAAAAAATCATATTTTCTTTTTTTTTTATTAT‑AATTATAAACATTAAAAACCTTTCAAATTTTA‑TTTTTTAGGC‑‑TTG‑‑‑tttt‑‑ttttttttt                                                                                                                         <  1:5840216/128‑1 (MQ=255)
              taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑tttt‑‑tttttttttt                                                                                                                        >  2:1130854/1‑128 (MQ=255)
              taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTCTAGGC‑‑TTG‑‑‑tttt‑‑tttttttttt                                                                                                                        >  1:3302742/1‑128 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAATCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGTC‑‑TTG‑‑‑tttt‑‑ttttttttttt                                                                                                                       >  2:7561567/1‑128 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCATTTAAACCCATTTTAAAAAAATCCTATTTTCTTGGCTTTTTATTAT‑AATTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑tttt‑‑ttttttttttt                                                                                                                       <  2:1302219/128‑1 (MQ=255)
                aaaaaaaaTTAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑tttt‑‑tttttttttttt                                                                                                                      >  1:9324542/1‑128 (MQ=255)
                aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACTCTTTCAAAGTGTA‑TTTTTTAGGA‑‑TTG‑‑‑tttt‑‑tttttttttttt                                                                                                                      >  2:7445844/1‑128 (MQ=255)
                aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGA‑‑TTG‑‑‑tttt‑‑tttttttttttt                                                                                                                      >  1:6986458/1‑128 (MQ=255)
                   aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑tttt‑‑tttttttttttttat                                                                                                                   >  1:5994369/1‑125 (MQ=255)
                    aaaataaaaatTTTTTATTTAAATAAATTTTTAAAAAAGCCTATGTTATATGTTTTTTTTTTT‑ACTTATAAACATTAAAACGCTTTAAAATTGTT‑TTTTTTATGC‑‑TTG‑‑‑tttt‑‑ttttttttttttttgt                                                                                                                  <  1:2879812/128‑5 (MQ=255)
                     aaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑ata                                                                                                               >  1:7871035/1‑126 (MQ=255)
                        taaaattTTTTAATTTAAATACATATTTAAAAAATAATATTTTATAGTTTTTTTATTTT‑ACTTATTAACATTTAAACTATTTAAAATTTTA‑TTTTTTTGTC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑aaaaa                                                                                                             <  1:444820/128‑1 (MQ=255)
                         aaaaatTTTTAATTTAAATCCATTTTTTAAAAAGCATATTTTTTTGTGTTTTTATTAT‑ACTTTTAAAAAATAAAACGCTTTTAAAGTGTT‑TTTTTTTTGT‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATa                                                                                                           <  2:4320109/128‑1 (MQ=255)
                         aaaaatTTTTAATTATATCGCATTTGTAAAAAACGCAATTTTATA‑GTTTTTTTTTATAAATTAACAAAAATACAACGCTTTCAAATTTTA‑TTTTTTAGGC‑‑TGG‑‑‑tttt‑‑ttttttttttttttgtaaaaa                                                                                                             <  2:6321318/128‑10 (MQ=255)
                          aaaatTTTTTATTTAAAGCTATTTTTAAAAAAGCCTATTTTATAGGTTTTTTATTAT‑AATTTTAAACATTAAAACGCTTTCAAAGTTTA‑TTTTTTATGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATa                                                                                                           <  2:4587862/128‑1 (MQ=255)
                          aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGTC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑TAAAATaa                                                                                                          >  1:1022150/1‑128 (MQ=255)
                          aaaatTTTT‑ATTTTAATCTATTTTTTAAAAATCCTATTTTTTTTGTTTTTTTTTTT‑ATTTATAAAAATTATACAGCTTTCAAATTTTT‑TTTTTTATGT‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATaa                                                                                                          <  2:4092025/128‑1 (MQ=255)
                           aaatTTTTAATTTAAAGCAATTTTTTAAAAAGTCTATGTTCTAGTCTTTTTATTAT‑AATTTTTAAAATTACAACTCTTTCAAAGTGTA‑TTTTTTAGGG‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATa                                                                                                           <  2:2249371/128‑1 (MQ=255)
                            aatTTTTATTTTAAAGCAATTTTTAAAAAATCATTTTTTTTTTGGTTTTTTTTTT‑AATTTTAAAAATTAAAACGCTTTAAAATTGTT‑TTTTTTTGGG‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATaaa                                                                                                         <  1:9464498/128‑1 (MQ=255)
                               ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATAAACATTAAAACGCTTTCAAAGTGTA‑GTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑TAAAATTAAAATa                                                                                                     >  2:7022614/1‑128 (MQ=255)
                                ttttATTTAAAGCAATTTGTAAAAAATCCTATGTTCTTGGCTTTTTATTAT‑TATTATAAACATTAAAACGCTTTCAAATTGTATTTTTTTGGGT‑‑TTT‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTa                                                                                                     <  2:817109/128‑1 (MQ=255)
                                tttaatttaaATCCATTTTTAAAAAAGCCTTTGTTATATGGTTTTTATTTT‑AATTATCAAAATTTAAACGGTTTAAAAGGGTA‑TTTTTTTTGCTTTTT‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGt                                                                                                      <  2:9027390/128‑1 (MQ=255)
                                    aTTTAAATCCATTTTTAAAAAATGATATTTTCTTGGCTTTTTTTTAT‑AATTTTCAAAATTACAACGCTTTAAAAGTGTT‑TTTTTTTTGG‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGAtt                                                                                                <  2:937926/128‑1 (MQ=255)
                                      taaaaGCCATTTTTAAAAAATACTATTTTTTAGTCTTTTTATTTA‑AATTATCAAAATTAAAATGCTTTCAAATTGTA‑TTTTTTTGGCT‑TTT‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGAttt                                                                                               <  2:4814366/126‑1 (MQ=255)
                                        aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAAGTAAGAttttg                                                                                             >  1:7531635/1‑126 (MQ=255)
                                         aatcatttttTAAAAAATACTATTTTATATTTTTTTTTTTTT‑ACTTTTCAACATTACAAAGCTTTCAAATTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGa                                                                                            <  1:857470/122‑1 (MQ=255)
                                         aaGCCATTTGTAAAAAAGCCTATGTGCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGGGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTTTCTTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTgg                                                                                             <  1:6704579/128‑1 (MQ=255)
                                             cATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAATTAAAATTAATATTTTGATaa‑a                                                                                       >  1:5363851/1‑128 (MQ=255)
                                                       aaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑TAAAATAAAATTAAGATTTTTTTCA‑AACAAAAatat                                                                             >  1:7163201/1‑128 (MQ=255)
                                                       aaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGTTTTTGTTCA‑ACCAAAAatatt                                                                            >  1:8923920/1‑127 (MQ=255)
                                                        aatcatATGTTATAGGTTTTTTTTTTT‑AATTTTAAAAAATAAAACTATTTAAATTTGTA‑TTTTTTAGGT‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACtata                                                                            <  1:6340288/123‑1 (MQ=255)
                                                         agcctagaacatAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑TAAATTAAAAGTTAGTTTTGGATCG‑ACCAAAACTttat                                                                           >  1:3626820/12‑128 (MQ=255)
                                                          gCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAATTTAATATTTTGATAA‑ACAAAAACtataaaa                                                                         >  2:5766124/1‑125 (MQ=255)
                                                              aTGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑‑‑‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGAACA‑ACCAAAACTATATAAAAAAAAtt                                                                 >  1:2092264/1‑128 (MQ=255)
                                                                gTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGTC‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTTT‑‑TAAAATAAAATTAATATTTTGAAAA‑ACCAAAA‑AATATAaaaaaa                                                                    >  2:2422789/1‑128 (MQ=255)
                                                                gTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAATTAAGATTTTGATCA‑AACAAAAATTTATaaaaaa                                                                     >  1:1632893/1‑128 (MQ=255)
                                                                 acatAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAATTTAATATTTGGTTAA‑ACCAAAACTTTTTAaaaaaa                                                                    >  1:1829077/4‑128 (MQ=255)
                                                                 acatAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAATTAAAATTTGGTTCA‑ACCAAAAATAAAACACAAAAAt                                                                  >  2:8852280/4‑128 (MQ=255)
                                                                  catAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑‑TTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTT‑T‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACAAAAAATATATCAAAAAAATTaa                                                               >  1:4643500/3‑128 (MQ=255)
                                                                   cTAGGCTTTTTATTAT‑TCTTATCAACATTACAACGCTTTCAAACTGAA‑TTTTTTAGGC‑‑ATGA‑‑TTAT‑‑TTATTATTTAATAT‑‑ATAAATAAAAATAATATTTTAAATA‑AAAAAAAAATTATCAAAAAAAtt                                                                 >  1:5612239/1‑128 (MQ=255)
                                                                   cTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAAAAAAATTAAAATTTGTAAAA‑ACAAAAAAAATATAAAAAAAAt                                                                  >  1:2386252/1‑128 (MQ=255)
                                                                    tAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAAATATTAAAAAAAAATTa                                                                >  1:8797382/1‑128 (MQ=255)
                                                                      ggCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAAAAATATTAATATTTTGTAAA‑AAAAAAACTATATaaaaaaaaattaa                                                              >  1:2472403/1‑123 (MQ=255)
                                                                        cTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAATTTAGATTTGGATCA‑AACAAAACTAAAAAAAAAAAATAaaaaaa                                                           >  2:7357398/1‑128 (MQ=255)
                                                                         tttttATTAT‑AATAATAAAAATTAAAACGCTTTAAAATTTTT‑TTTTTTTGGT‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTaaaaaaa                                                          <  2:7226278/128‑1 (MQ=255)
                                                                            tttttat‑AATTATTAAAATTACAAAGCTTTAAAAGTTTA‑TTTTTTAGGA‑‑TTG‑‑‑‑‑‑T‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAAtagtt                                                    <  1:4067277/125‑1 (MQ=255)
                                                                            ttattaT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAAAAAAATTAATATTTGGATCA‑AACAAAACTATATCAAAAAAATTAAAAAAAAt                                                        >  1:4926592/1‑128 (MQ=255)
                                                                            ttattaT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTT‑T‑‑AAAAATAAAAGTAAAATTTGTATAA‑CACAACAaaataaaaaaaaaaataaaaaaaaaat                                                      >  2:2969876/1‑125 (MQ=255)
                                                                                    aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTTTTAAAAAAAAAAATTAATATTTGAATAA‑ACAAAAAAATTAAAAAAAAAATTAAAAAAAAtatttta                                                  >  1:1196023/1‑128 (MQ=255)
                                                                                       tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAATTAATATTTGGATAA‑ACCAAAACTATTTAAAAAAAATTAAAAAAAATATTTTATTTg                                              >  1:2216275/1‑128 (MQ=255)
                                                                                        aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAATTAATATTTTGTTAA‑ACCAAAACTATTtaaaaaaaattaaaaaaaattttttttttt                                              >  1:1447152/1‑118 (MQ=255)
                                                                                         tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTTAGTTTTTGGTCA‑AACAAAACAATATCAAAAAAATTAAAAAAAAatttttagttagg                                            >  2:9153339/1‑125 (MQ=255)
                                                                                             cATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAAAAAAAGTAATTTTTGGATAC‑CACAAAACTTAAAAAAAAAAATTAAAAAAAAAAGTTTAGTTTTGttt                                         >  2:3806893/1‑128 (MQ=255)
                                                                                                tACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAATTAATATTTGTATCA‑ACAAAAAATATATAAAAAAAATTAAAAAAAATATTTATTTTGAGTTTaaa                                      >  1:7433789/1‑128 (MQ=255)
                                                                                                 aCAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAATTAAAATTTGTATAA‑AACAAAAATATATAAAAAAAATTAAAAAAAAAATTTTATTTTAATTTaaaa                                     >  1:7765180/1‑128 (MQ=255)
                                                                                                  cAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTTT‑‑TAAAAAAAAAGTAAGATTTGGATCA‑ACCAAAAAAATATCAAAAAAATTAAAAAAAAAAGTTTAGTTTAGTTTaaata                                    >  2:1624618/1‑126 (MQ=255)
                                                                                                   aaCGCTTTCAAAGTGTA‑TTTTTTAGGCTTTTT‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAAAAAAAGTAAGAATTTGTTAA‑AAAAAAACTAAATAAAAAAAATATAAAAAAATA‑TTTAATTGAAttttacaaaa                                  >  1:4765653/1‑121 (MQ=255)
                                                                                                    aCGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTTTTTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAATTAAGATTTGGATCA‑ACCAAAAATTTATAAAAAAAATTAAAAAAAAAAGTTTATTTTATTTTAAAAta                                   >  1:794779/1‑127 (MQ=255)
                                                                                                      tatttaatattttA‑TTTTTTAGTT‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCa                               <  1:7265109/116‑1 (MQ=255)
                                                                                                      gCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAAATAATATTTTTATAA‑AACAAAAATATATCAAAAAAATTAAAAAAAATAATTTATTTTATTTTAAAATATgaa                               >  2:830673/1‑126 (MQ=255)
                                                                                                       cTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTTTTTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAAGTAAGATTTTGATAA‑ACAAAAAATATATAAAAAAAATTAAAAAAAAAAGTTTTATTTAGTTAAAAAACTga                                >  2:5168760/1‑127 (MQ=255)
                                                                                                          tCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑TAAAATAAAAATAATATTTTGATAA‑AACAAAAAAATATAAAAAAAATTAAAAAAAAAAGTTTATTTTTGTTTAAAATATGCataat                           >  2:2600646/1‑126 (MQ=255)
                                                                                                          tCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAAAAAAATTAAGATTTTGATCA‑ACCAAAAAAATATAAAAAAAAAAAAAAAAAAAAATTTAATTCAGTTTAAAATCtaaaaaaa                           >  1:4231178/1‑121 (MQ=255)
                                                                                                          tCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAAAAAAAGTAAGATTTGGAAAA‑ACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATCTGCatataa                          >  1:387683/1‑127 (MQ=255)
                                                                                                            aaaGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTTGATCA‑ACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTAGTTTATTTTAAAATCTGCAtattta                         >  1:5213463/1‑128 (MQ=255)
                                                                                                             aaGTTTT‑TTTTTTATGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                        <  2:7923291/128‑1 (MQ=255)
                                                                                                             aaGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAAGTAATTTTTGGAACA‑CCCAAACCTATATCAAAAAAATTAAAAAAAATAGTTTCTTTGATTTGAAAAtagggataattag                        >  2:9513433/1‑116 (MQ=255)
                                                                                                             aaGTGTA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAAAAAAAGTAAAATTTGTTTAA‑ACCAAAAAATTAAAAAAAAAAATAAAAAAAATATTTTATTTTATTTTAAAATAAGAATATAAAg                        >  1:8366913/1‑128 (MQ=255)
                                                                                                                tgtA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAAAAAAAGTAATATTTGGTTAA‑CCCAAAAATATTTAAAAAAATTTAAAAAAAAAATTTTATTTTTTTTTAAAATATGAatattttatac                     >  1:6529280/1‑121 (MQ=255)
                                                                                                                tgtA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑TT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaaa                  >  1:3205133/1‑128 (MQ=255)
                                                                                                                 gtA‑TTTTTTAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAAAAAAATTAATATTTGGAAAA‑ACCAAAAATATTAAAAAAAAATTAAAAAAAAAATTTTTTTTTATTTTAAAATATGAAtatatataaaa                    >  1:8213433/1‑123 (MQ=255)
                                                                                                                  tttttttttttGT‑‑TTT‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa                   <  1:3027846/125‑1 (MQ=255)
                                                                                                                  tttttttttGTGT‑‑TTT‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa                   <  2:1038249/125‑1 (MQ=255)
                                                                                                                  tA‑TTTTTTAGGC‑‑TTGTT‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAATTAATTTTTGGTTAA‑ACAAAAAATATTTAAAAAAAATTAAAAAAAATATTTTTTTTTATTTTAAAATATTAATATATATTaaa                    >  1:9633097/1‑126 (MQ=255)
                                                                                                                    tttttttttGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaaa                  <  2:7712110/127‑1 (MQ=255)
                                                                                                                     ttttttAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAAGTAATATTTGGATCA‑ACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTCAAATATGAATATATATTACAAAg                 >  1:7630436/1‑128 (MQ=255)
                                                                                                                       ttttAGGC‑‑TTG‑‑‑‑‑‑T‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑CCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGATTTTAAAATATCCATATATTGTACAAAGGAAtat           >  2:3483747/1‑126 (MQ=255)
                                                                                                                        tttAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTTT‑‑AAAAATAAAATTAAGATTTTGATAA‑ACCAAAACTATAAAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAAAATGAATATTTATTAAAAAGGaa              >  2:8044859/1‑128 (MQ=255)
                                                                                                                         ttAGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAATTTAGATTTGGAAAA‑ACAAAAACAATATAAAAAAAATTAAAAAAAATATTTATTTTGATTTTGAATTATTCATATTAATTAAAAAGGAAt             >  2:8523095/1‑128 (MQ=255)
                                                                                                                           aGGC‑‑TTGT‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAAAAAAAGTAAGTTTTGGATCC‑ACCAAAAATATATCAAAAAAATTAAAAAAAATATTTTTGTTGAGTTTCAAAACAGCGTATATTTTACAAATGAAatt           >  1:8058545/1‑128 (MQ=255)
                                                                                                                              tggcttttttttt‑‑ttttttttttttGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt            <  1:9043447/119‑1 (MQ=255)
                                                                                                                               tttttttttttt‑‑ttttttttttttGT‑‑AAAAATAATAGTAAGATTTGGATCA‑ACCATTAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt           <  2:6644630/120‑1 (MQ=255)
                                                                                                                               ttgttttttttt‑‑ttttttttttttGT‑‑AAAAATAAAAGTTAGATTTGGATCA‑ACAAAAACTATATCAAAAAAATTAAAAAAAATTGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt           <  1:2686742/120‑1 (MQ=255)
                                                                                                                                ttttttttttt‑‑ttttttttttttGT‑‑AAATATAAAAGTAAGATTTTGATAA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa          <  1:5080267/121‑1 (MQ=255)
                                                                                                                                 ttgttttttt‑‑tttttttttttttt‑‑AAAAAAAAAAGTAAAATTTTGATCACCCCAAAAATA‑AAAAAAAAAATAAAAAAAAAAATTTTATTTGATTTAACAATCTAAATATATAGTAAAACGGTATTTAt         >  2:8733540/7‑128 (MQ=255)
                                                                                                                                 tgtttttttt‑‑ttttttttttttGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt         <  2:3244095/122‑1 (MQ=255)
                                                                                                                                   tttttttt‑‑ttttttttttttGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa       <  2:9279768/124‑1 (MQ=255)
                                                                                                                                    tgttttt‑‑ttttttttttttGT‑‑TATAATAAATTTAAGATTTTTATTA‑AACAAAACTATATCAAATAAATTAAAATAAATAGTTTATTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt      <  2:7828120/125‑1 (MQ=255)
                                                                                                                                      ttttt‑‑ttttttttttttGT‑‑AAAAATAAAATTAATATTTGGTTAA‑ACCAAAACTTTTTAAAAAAAATTAAAAAAAATATTTTATTTTTATTTAAAATCTGAAAAAATAGTAAAAAGGAATTTataataa    >  1:9157416/2‑127 (MQ=255)
                                                                                                                                       tttt‑‑tttttttttttttt‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTTAGTTTAAAAAATGCATATATATTACAAAGGAATTAATtatata   >  2:2057547/1‑126 (MQ=255)
                                                                                                                                       |                                                                                                                                     
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑TTTT‑‑TTTTTTTTTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAA  >  CP016816/203768‑204024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.