Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4880T.35.6% 717.0 / inf 839intergenic (+266/‑409)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (217/234);  new base . (56/193);  total (325/514)
Fisher's exact test for biased strand distribution p-value = 1.37e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.51e-04

Only 100 of 921 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202369‑202617
                                                                                                                           |                                                                                                                                   
     taGAGTTAAGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAAT‑‑‑CAAATAAAAAATaaaaaaaaa                                                                                                                     >  2:4595199/1‑128 (MQ=255)
      agagTTAAGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATC‑TTCAC‑AAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaa                                                                                                                     >  2:2104037/1‑128 (MQ=255)
      agagTTAAGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAAAAAACCC‑‑‑ATAAAAAATaaaaaaaaaa                                                                                                                    >  1:9574471/1‑128 (MQ=255)
         gTTAAGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATCTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaa                                                                                                                  >  2:2338458/1‑128 (MQ=255)
          ttAAGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑‑AAAAAAAAACAATACCCTT‑‑‑AAAAATaaaaaaaaaaaaaaa                                                                                                               >  2:9264446/1‑128 (MQ=255)
          ttAAGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATA‑TTCAC‑AAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAAAAATtaaaaaaaaaaaaa                                                                                                                >  2:886139/1‑128 (MQ=255)
           tAAGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                                >  2:4757123/1‑128 (MQ=255)
            aaGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAATtaaaaaaaaaaaaaaa                                                                                                              >  1:4673924/1‑128 (MQ=255)
            aaGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                               >  1:7284433/1‑128 (MQ=255)
            aaGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAAAAATtaaaaaaaaaaaaaaa                                                                                                              >  1:4268890/1‑128 (MQ=255)
            aaGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAAAAAACCC‑‑ATTAAAAATTaaaaaaaaaaaaaaa                                                                                                               >  1:8464464/1‑128 (MQ=255)
            aaGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATA‑TTCAC‑AAAT‑AAAAAAAAAA‑AAT‑‑‑CAAATAAAAAATtaaaaaaaaaaaaaaaa                                                                                                             >  2:3412595/1‑128 (MQ=255)
            aaGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTATTTATTTGTTTATC‑TTCAC‑AAAT‑‑AAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaa                                                                                                              >  1:5531798/1‑128 (MQ=255)
            aaGGTTAATT‑AAAATACCATAAACTGAATAATTCTTATAATGTAGAACCTCGTGATCTATTTATTTATTTGTTTTTC‑TTCAC‑AAAT‑AAAAAATAAACAATACAC‑‑TTAAAAATTaaaaaaaaaaaaaca                                                                                                               >  2:7472050/1‑126 (MQ=255)
              ggTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTATATAATCGTGATCTATTTAATTATTTGTATATC‑TTCAC‑AAAT‑AAAAAAAAAACAAAAAAC‑‑‑AAAAAAATtaaaaaaaaaaaaaaaaa                                                                                                            >  1:8860526/1‑128 (MQ=255)
              ggTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATC‑TTCAC‑AAAT‑AAAAAAAAAAAAAT‑‑ACAATTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                             >  2:3592462/1‑128 (MQ=255)
              ggTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAATAAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                              >  2:7809937/1‑128 (MQ=255)
              ggTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                             >  2:1063111/1‑128 (MQ=255)
              ggTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                             >  2:8347323/1‑128 (MQ=255)
              ggTTAATA‑AAAATACCATAAACTTAATAATACTTATAATGTAAATCATAAATATCTATTTTTTTATATGTTTATA‑TTAAC‑AAAT‑AAAAAAAAAACAATCC‑‑‑AATAAAAAATtaaaaaaaaaaaaaaaaa                                                                                                            >  2:518190/1‑128 (MQ=255)
               tttaattaaAAATAACA‑AAAATAAAAAATTCTTATAATTTATATCCTCGTTTACTATTTTTTTTTTTTTTTATA‑TT‑AA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaa                                                                                                           <  2:625967/127‑1 (MQ=255)
               gTTTATT‑AAAAAAACATAAAATTTATAATTATTAAAATTTATATCCTACTTATAAATTTTTTTATTTTTTAAAA‑TTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                            <  1:6095501/128‑1 (MQ=255)
                 taatt‑aaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATC‑TTCAA‑AAAT‑AAAAAAAAAACAATAAC‑‑‑ATAAAAAATtaaaaaaaaaaaaaaaaaaa‑a                                                                                                        >  1:4891726/1‑128 (MQ=255)
                  aatt‑aaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTTTTTGTATATA‑TTCAA‑AAAT‑AAAAAAAAAAAAAAACAC‑‑ATAAAAAATaaaaaaaaaaaaaaaaaaaa‑a                                                                                                        >  2:4113711/1‑128 (MQ=255)
                   att‑aaAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAAAAAACC‑‑‑AATAAAAAATaaaaaaaaaaaaaaaaaaaa‑aaa                                                                                                      >  2:4935622/1‑126 (MQ=255)
                   att‑aaAATACCATAAACATAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAAT‑‑CCAATTAAAAAATaaaaaaaaaaaaaaaaaaaa‑aa                                                                                                       >  2:6540685/1‑127 (MQ=255)
                    tt‑aaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTATTTTTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaa‑aaaa                                                                                                     >  1:8203634/1‑125 (MQ=255)
                    ataaaaaTAACATAAAATTAATAATTCTTATAATGTAGATCATCGTTTTATATTTTTTTATTTTTTTATA‑TTAAA‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaactaaa                                                                                                        <  1:2997934/125‑6 (MQ=255)
                    at‑aaaataaaataaaaTTAAAAAATTTTATAATTTATTTCCTCTGTTTTTTTTTTTTTTTTTTTTTTTA‑TTTAA‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa‑aac                                                                                                      <  2:3308351/127‑3 (MQ=255)
                     t‑aaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATC‑TTCAC‑AAATAAAAAAAAAAACAATCAAC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaa‑aaa                                                                                                      >  2:2467759/1‑126 (MQ=255)
                       taaaTACCATAATCTTTATATTTATTTTAATTTATTTTATCGGGTTTTTTTTTTTTATTTTTTTATC‑TTAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaactaaaa                                                                                                     <  1:8731193/127‑7 (MQ=255)
                       aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAAAAATCACC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaa‑aaaaa                                                                                                    >  1:2475419/1‑124 (MQ=255)
                       aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAAAAATACC‑‑ATAAAAAATTaaaaaaaaaaaaaaaaaaaa‑aaaaa                                                                                                    >  2:3138200/1‑124 (MQ=255)
                        aaaTATCATAAAAATTATAATTATATTAATGTTGATCGATGTGATATATTTTTTTTTTTTTTTATA‑TTAAC‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaactaaaaa                                                                                                    <  2:8556315/128‑8 (MQ=255)
                        aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAA‑‑ACAAATTAAAAATTaaaaaaaaaaaaaaaaaaaa‑aaaaaa                                                                                                   >  1:7349360/1‑123 (MQ=255)
                         aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑ATAAAAATTAaaaaaaaaaaaaaaaaaaa‑aaaaaaa                                                                                                  >  2:1722675/1‑128 (MQ=255)
                           taaaataaaaataaaaAATATTAAAATTTATATACTAGTTATCTAATTTTTTATTTTTTTATA‑TTAAA‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAA‑ACTAAaaacaaa                                                                                             <  1:1476294/124‑1 (MQ=255)
                            aCCATAAACATAAAAATAGTTAAAATGTAGATACTCGTTTTCTATTTTTTTATTTTTTTATT‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAA‑ACTAAaaacaaac                                                                                            <  1:4508060/128‑1 (MQ=255)
                              cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa‑aaataaaattta                                                                                             >  2:9042443/1‑117 (MQ=255)
                               aTAAACTTAAAAATTTTTATAATGTATTTTATCTTTTTTTATTTTTTTATTTGTTTATA‑TTTAA‑AAAA‑TAAAAAAAAAAAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑ACTAAaaacaaa                                                                                             <  2:7214124/128‑1 (MQ=255)
                                tAAAATTAATAATTATTTAAATTTATATCATCTTTATATTTTTTTTTATTTTTTTAAA‑TTAAA‑AAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTa                                                                                        <  1:5227692/128‑1 (MQ=255)
                                   aattAATAAATTTTTTAATGTATTTCCTGGTTATTTTTTTTTTTTTTTTTTTAAA‑ATCAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTa                                                                                        <  2:7383892/126‑1 (MQ=255)
                                   aaataatatatattAAAATTTATATACTCGTTATATATTTTTTTATTTTTTTATA‑TTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTa                                                                                        <  1:9132514/116‑1 (MQ=255)
                                    attAATAATTTATAAAATTTATAAACTTGTTATTTTTTTTTTTTTTTTTTTTTA‑TTAAA‑AAAA‑AAAAAAAAAAAAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTAt                                                                                       <  2:4355724/127‑1 (MQ=255)
                                    ataaattatTATTATAATTTATATACTCGTTTTTTATTTTTTTATTTTTTTATT‑TTTAA‑AAATAAAAAAAAAAACAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTa                                                                                        <  1:7537008/125‑1 (MQ=255)
                                      taataaTTATTAAAATGTATATACATGTGATCTATTTTTTTTTTTTTTTATA‑TTAAA‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCt                                                                                   <  1:8966221/128‑1 (MQ=255)
                                       aataatTTTTATAATTTTTATACTGTTTATATATTTTTTTTTTTTTTTTTA‑TTAAA‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCt                                                                                   <  2:5693528/128‑1 (MQ=255)
                                             ttttttaATGTATATCCTTCTTATATATTTTTTTATTTTTTTTTA‑ATCAA‑AAAT‑AAAAAAAAAAAAAACCACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAAt                                                                             <  1:9500591/123‑1 (MQ=255)
                                             tataataATTTATTTCCTCGTGATATATTTTTTTATTTTATAATA‑TAAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTaaa                                                                               <  1:6327051/124‑1 (MQ=255)
                                                taaaaattataTCCTAGTTATCTATTTTTTTTTTTTTTTATA‑TTAAA‑AAAA‑AAAAAAAAAAAAAACCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAAt                                                                             <  1:9393116/118‑1 (MQ=255)
                                                 aaaaTTTATATCCTCGTTATATATTTTTTTATTTTTTTATA‑TTAAA‑AAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCta                                                                       <  1:7665029/126‑1 (MQ=255)
                                                    aattataatctagTGATATATTTTTTTATTTTTTTATA‑ATAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                        <  1:2431763/116‑1 (MQ=255)
                                                     agTATATCCACGTGATCAATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAAAT‑‑‑‑‑AAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTGTAc                                                                 <  2:8101581/127‑1 (MQ=255)
                                                      ttataaccTCGTTATTTATTTTTTTATTTTTTTATA‑ATAAA‑AAAA‑AAAAAAAAAACAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                                    <  1:8377180/122‑1 (MQ=255)
                                                       tAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACAATATGTATTAACATTcccatttaa                                                                   >  2:957242/1‑122 (MQ=255)
                                                         tatactctTGATCTTTTTTTTTATTTTTTTATA‑TTCAA‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  1:1157722/124‑1 (MQ=255)
                                                           tacTCGTTATCTATTTTTTTATTTTTTTATCATTAAA‑AAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  1:3222672/126‑1 (MQ=255)
                                                            aactttatatattttttttATTT‑ATTATA‑TTAAA‑AAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                            <  1:6997000/116‑1 (MQ=255)
                                                             atttgttattATTTTTTTTTTTATTTATT‑TTTAA‑AAAT‑AAAATAAAAAAAAATAAC‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  1:7239417/119‑1 (MQ=255)
                                                              tcgttaaatATTTTTTTATATTTTTAAC‑ATAACAAAAA‑AAAAAAAAAACAATACCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  1:3103893/120‑1 (MQ=255)
                                                              cccgttaatATTTTTTTATTTGATTAAC‑TTAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑TAAAAAATAAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                              <  2:9465409/120‑1 (MQ=255)
                                                               tgttttatATTTTTTTTTTTGTTTATA‑TTAAA‑AAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                         <  2:8039184/121‑1 (MQ=255)
                                                               tgTGATATAATATTTAATATGTTTATA‑TAAAC‑AAAA‑AAAAAAAAAAAAAACCCCATT‑‑AAAATTAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATATCTTAAAATTCCCTATTATACCACat                                                            <  2:7319891/127‑1 (MQ=255)
                                                                gttaTCTATTTTTTTATTTTTTTATA‑TTAAC‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  1:281683/125‑1 (MQ=255)
                                                                gTGATTTTTTTTTTTATTTTTTTATA‑TTTAA‑AAAA‑AAAAAAAAAACAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  1:7909729/128‑1 (MQ=255)
                                                                 ttatatATTTTTTTAATTTTTTATA‑TTAAA‑AAAT‑AAAAAAAAAACAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                         <  1:3371740/123‑1 (MQ=255)
                                                                 tgttttATTTTTTTATTTGTTTAAA‑TTAAA‑AAAT‑AAAAAAAAAAAAAAACCC‑‑TAAAAAAATAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  2:5027007/123‑1 (MQ=255)
                                                                 tGATATTTTTTTTTATTTTTTTATA‑TTAAA‑AAAA‑AAAAAAAAAAAAATCAC‑‑ATTAAAAAATAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  1:1751075/128‑1 (MQ=255)
                                                                  tttatatttttttattttttTAAC‑TTAAA‑AAAT‑‑AAAAAAAAACAAAACCC‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                         <  1:1026212/124‑1 (MQ=255)
                                                                      tATTTTTTTTTTTTTTTTAA‑ATAAA‑AAAA‑AAAAAAAAAAAAATTACCTTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                     <  1:8037892/128‑1 (MQ=255)
                                                                       atttttttatttttttATA‑TTTAC‑AAAA‑AAAAAAAAAAAAATAACC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                   <  1:7412367/128‑1 (MQ=255)
                                                                       aTTTTTTTATTTGTTTAAA‑ATAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                    <  1:6577719/128‑1 (MQ=255)
                                                                        ttttttttttttttTA‑A‑TTAAA‑AAAT‑AAAAAAAAAAAAAATCACATT‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                  <  1:8592821/128‑1 (MQ=255)
                                                                         ttttttATTTTTTTAAA‑ATAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                 <  1:2195509/128‑1 (MQ=255)
                                                                          ttttttttttttTATA‑TTTAA‑AAAT‑AAAAAAAAAAAAATACCCATT‑‑‑AAAATTAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                <  1:536669/128‑1 (MQ=255)
                                                                           ttttATTTTTTTTTA‑TTTAA‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                              <  1:7802379/128‑1 (MQ=255)
                                                                           ttttATTTTTTTTAA‑TTAAA‑AAAT‑AAAAAAAAAAAAATACACTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                             <  1:3585271/128‑1 (MQ=255)
                                                                           ttttATTT‑TTTATA‑TTTAA‑AAAA‑AAAAAAAAAAAAAAAACC‑CTTAAAAATTAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                <  1:1315819/128‑1 (MQ=255)
                                                                             ttATTT‑TTTATA‑TTTAC‑AAAA‑AAAAAAAAAAAAATACCC‑‑ATAAAAAAT‑AAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                            <  1:8640335/128‑1 (MQ=255)
                                                                               tttttttTATA‑TTCAA‑AAAA‑AAAAAAAAAAAAAAACCC‑‑‑TATAAAAT‑TAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑Ga                                         <  1:6741130/127‑1 (MQ=255)
                                                                                    tttATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑A‑TAAAAAAAAAAAATTTTATTTAAAATACCAATTTAAACCAAATTTTATTTTaaataaaataatttg                                     >  1:7744963/1‑116 (MQ=255)
                                                                                      tATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑A‑TAAAAAAAAAATCTATTTGTTAAAATTCACATATATACCACATTTAAATTTTAAAAAAA‑TATAttcaa                                  >  1:8770494/1‑125 (MQ=255)
                                                                                          ttataaaaaaa‑aaaaaaaaaaaaATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACa                                 <  2:1209429/121‑1 (MQ=255)
                                                                                          taataaaaaaT‑AAAAAAAAAAAAATACAATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACa                                 <  1:4405866/121‑1 (MQ=255)
                                                                                           ttaac‑aAAT‑AAAAAAAAAACAATCCCC‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACa                                 <  1:8135089/125‑1 (MQ=255)
                                                                                           atttaaaaaT‑AAAAAAAAAAAAATATCATTT‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACat                                <  1:50582/122‑1 (MQ=255)
                                                                                           aataaaaaaa‑aaaaaaaaaaCAATCAC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACa                                 <  1:1962441/122‑1 (MQ=255)
                                                                                            ttaaaaaaa‑aaaaaaaaaaaaATAACC‑ATAAAAATAAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACa                                 <  1:2581002/123‑1 (MQ=255)
                                                                                            ttaaaaaaa‑aaaaaaaaaaCAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAATACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACa                                 <  2:7605833/123‑1 (MQ=255)
                                                                                             ttcaaaaT‑AAAAAAAAAAAAAAAACCCTATAAAATTAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑TATATTGACa                                 <  1:580915/124‑1 (MQ=255)
                                                                                             cac‑aAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAA‑CAAAAAAACAAACGCAATTAAATAAAATACCAATTAAAACCCCATTTATTTTTTAAAATAA‑TATATTGaaaaaa                              >  1:827542/1‑123 (MQ=255)
                                                                                                 aaaa‑aacaaaaaaacaAACCCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAatatat                         <  2:8713954/128‑1 (MQ=255)
                                                                                                 aaaT‑AAAAAAAAAA‑AAAAAACATTTAAAAATAAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACattata                            <  1:4140057/128‑1 (MQ=255)
                                                                                                      taaaaaaaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑ACAAAAAACAAACACAATTTCTAAAAAAACCATATTATAACACATTTTTTTTTAAAAAAAA‑GAAATTGACATAatatatata                      >  2:8629988/2‑127 (MQ=255)
                                                                                                              aaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑A‑TAAAAACAAAAAATATTTATAAAAAATCCATATTATAAAAAATTTTATTTTTAAATTAA‑AATTTTTAAATATAATATAAAAAatatatt             >  2:937411/1‑127 (MQ=255)
                                                                                                              aaCAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAA‑AAAAAAACAAAACTAAATTGATTAAAATACCCATTTTAACAACATTTTTTTTTAAAAATAA‑GTTATTGACATAatatttataaaaaata               >  2:7968172/1‑120 (MQ=255)
                                                                                                                   aaaacacataaaaaat‑aaaaaaAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAATATATATCTAAtatatata           <  2:8228828/120‑1 (MQ=255)
                                                                                                                     taacaataaaaattaaaaaaAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAATATATATCTAatatatatca          <  1:9264446/122‑3 (MQ=255)
                                                                                                                        ccttaaaaattaaaaaAAAAAAAAAAAAAAA‑AATAAAAAAAAACTATATTAATTAAAATAAAATATTATAACACATTATTTTATTAAAAAAATAATATT‑ACATAATTtttataaaatttataaaaaaa       >  2:2822471/3‑125 (MQ=255)
                                                                                                                           taaaaattaaataaAAAAAATAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAATATATATCTAATATATATAATACtat    <  1:3864152/128‑1 (MQ=255)
                                                                                                                           |                                                                                                                                   
AATAATAGAGTTAAGGTTAATT‑AAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATC‑TTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAA‑ACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202369‑202617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑