Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT44.0% 445.8 / inf 848intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (150/325);  new base T (164/209);  total (314/534)
Fisher's exact test for biased strand distribution p-value = 2.54e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 979 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAA‑AA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGC  >  CP016816/202369‑202620
                                                                                                                               |                                                                                                                                
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAATACCC‑‑Ttaaaa‑at‑t‑aaaa                                                                                                                           >  2:483881/1‑128 (MQ=255)
   aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAATCCCC‑‑Ttaaaa‑at‑t‑aaaaaa                                                                                                                         >  1:1719278/1‑128 (MQ=255)
    ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaa                                                                                                                        >  2:8675708/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCAAAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑ATAAAA‑AA‑T‑aaaaaaaa                                                                                                                       >  2:7600894/1‑128 (MQ=255)
      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTAT‑CTTCACAAATAAAAAAAAAAAAAACCCC‑‑TTAAAA‑AT‑T‑aaaaaaaaa                                                                                                                      >  2:2104037/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaa                                                                                                                   >  2:8201798/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATACCC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaa                                                                                                                   >  2:8607701/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑ATTAACAAATAAAAAAAAAAAAATCCAATT‑‑‑AAA‑AA‑T‑aaaaaaaaaaaaa                                                                                                                  >  2:3435948/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATCTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaa                                                                                                                   >  2:2338458/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAA‑AATCCCC‑‑‑TAAAA‑AA‑T‑taaaaaaaaaaaaaaa                                                                                                               >  1:7366834/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATATGTTTAT‑ATTCACAAATAAAAAAAAAAAAATAAC‑‑‑ATAAAA‑AA‑T‑aaaaaaaaaaaaaaaa                                                                                                               >  2:4406007/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaaaaa                                                                                                                >  2:8002054/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCAC‑‑ATTAAAA‑AT‑T‑aaaaaaaaaaaaaaa                                                                                                                >  1:7759873/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTCTTTAT‑CTTCACAAATAAAAAAAAAAAAAACCACTT‑‑‑AAA‑AA‑T‑aaaaaaaaaaaaaaaa                                                                                                               >  1:5105141/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTAT‑CTACACAAATAAAAAAAAAACAATCACATT‑‑‑AAA‑AA‑T‑aaaaaaaaaaaaaaaa                                                                                                               >  2:6343420/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaaaaaa                                                                                                               >  2:7434870/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAAACAC‑‑‑ATAAAA‑AA‑T‑aaaaaaaaaaaaaaaaa                                                                                                              >  2:5352703/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATAATCGTGATCTATTTAATTATTTGTATAT‑CTTCACAAATAAAAAAAAAACAAAAAAC‑‑‑AAAAA‑AA‑T‑taaaaaaaaaaaaaaaaa                                                                                                             >  1:8860526/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTAT‑CTTCAAAAATAAAAAAAAAACAATCACAAT‑‑‑AAA‑AA‑T‑aaaaaaaaaaaaaaaaaa                                                                                                             >  2:4156431/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAAAAAC‑‑ATTAAAA‑AT‑T‑aaaaaaaaaaaaaaaaa                                                                                                              >  2:9360642/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAATAAAC‑‑TAAAAA‑AA‑T‑aaaaaaaaaaaaaaaaa                                                                                                              >  2:729582/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTATAT‑CTTCACAAATAAAAAAAAAAAAAAACC‑‑‑ATAAAA‑AA‑T‑taaaaaaaaaaaaaaaaa                                                                                                             >  1:8727735/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAAACACC‑‑‑TAAAA‑AA‑T‑aaaaaaaaaaaaaaaaaa                                                                                                             >  2:463070/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATATATATTTTTATTTGATTAT‑ATTAAAAAATAAAAAAAAAACAAAACACaaaaaaaa‑aa‑a‑aaaaaaaaaaaaaaa                                                                                                                >  2:6038974/1‑128 (MQ=255)
              ggTTAATTAAAATACAATAAACTTAATAATTATTATAATGTATATACTCGTGATCTATTTTTTTATTTATTTAT‑CTTCACAAATAAAAAAAAAACAATACC‑‑ATTAAAA‑AT‑T‑aaaaaaaaaaaaaaaaa                                                                                                              >  1:404598/1‑128 (MQ=255)
               tttaattaaAAAAAAATAAATATAAAAATTTATTTAATTTATATACTTTTTTTTTTTTTTTTTTTTTTTTTAT‑TTTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaaaaaaaa                                                                                                             <  2:9463212/127‑1 (MQ=255)
                ttaattaaAATACCATAAACTCAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AA‑T‑aaaaaaaaaaaaaaaaaaaa                                                                                                           >  2:4982087/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTAT‑CTTCACAAATAAAAAAAAAAAAAAACAC‑‑CTAAAA‑AA‑T‑taaaaaaaaaaaaaaaaaaa                                                                                                           >  1:7462477/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaaaaaaaaaa                                                                                                           >  1:7939576/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCCTTAAAAAT‑aa‑a‑aaaaaaaaaaaaaaaaaaa                                                                                                            >  2:1059130/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAAACCCC‑‑TAAAAA‑AT‑T‑aaaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:2387431/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAATCCAC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaaaaaaaaaat                                                                                                          >  2:5084876/1‑127 (MQ=255)
                  aattaaAATAACATAAAATTAATAAATAATAAAATTTATATACTAGTTATATTTTTTTTTAATTTTTTAT‑AATAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaaaaaaaaact                                                                                                          <  1:3748690/128‑3 (MQ=255)
                   attaaAAAAAAATAAAATTAATAAATTATAAAATTTATATACTATTTTTTTATTTTTTTATTTTTTTAT‑ATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAA‑AA‑T‑aaaaaaaaaaaaaaaaaaacta                                                                                                         <  1:7297052/128‑4 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCACC‑‑ATAAAA‑AT‑T‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:8188044/1‑126 (MQ=255)
                    ataaaataaaataaaaTTAAAAAATTTTATAATTTATTTCCTCTGTTTTTTTTTTTTTTTTTTTTTTT‑ATTTAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaaaaaaaaaaaac                                                                                                        <  2:3308351/127‑3 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAATCCAC‑‑TAAAAA‑AT‑T‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:7916733/1‑124 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAATACC‑‑ATAAAAA‑AT‑T‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:3138200/1‑124 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAAAAACCCC‑‑‑TAAAA‑AA‑T‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  2:7156137/1‑123 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑ATAAAA‑AT‑T‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:1722675/1‑128 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTAATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAAACACC‑‑TTAAAA‑AT‑T‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:7588225/1‑128 (MQ=255)
                          aaacATAAAAATAAAAATTCATAAAAATTATATCCTCGTGATATATTTTTTTATTTTTTTAT‑ATTAAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                 <  1:8354063/125‑1 (MQ=255)
                            aaaTAAACTTATATATTCTTATAATTTATATCATCTTTTTCTTTTTTTTTATTTTTATAT‑ATTAAAAAATAAAAAAAAAAAAAATCCC‑CTTAAAA‑AA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                 <  1:271781/126‑1 (MQ=255)
                             cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaaaaaaaaaaaaaaaaataaaattta                                                                                               >  2:9042443/1‑117 (MQ=255)
                                   cTTAATAAATATTATAATGTATATCCTCTTTATATATTTTTTTATTTTTTTAT‑CTTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                         <  1:8454742/128‑1 (MQ=255)
                                     taataaTTATTAAAATGTATATACATGTGATCTATTTTTTTTTTTTTTTAT‑ATTAAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AA‑T‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                                     <  1:8966221/128‑1 (MQ=255)
                                      aataatTATTAAAATTTATATAATTTTTATTTATTTTTTTTTTTTTTTAT‑TTTAAAAAATAAAAAAAAAAAAATCCCC‑ATAAAAA‑TT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                                       <  1:1226884/128‑1 (MQ=255)
                                           tttttATAATTTATATACTATTTATATATTTTTTTATTTTTTTAT‑ATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                                 <  1:3439969/125‑1 (MQ=255)
                                            ttttttaATGTATATCCTTCTTATATATTTTTTTATTTTTTTTT‑AATCAAAAATAAAAAAAAAAAAAACCACTT‑‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                               <  1:9500591/123‑1 (MQ=255)
                                            tattAAAATGTATATCCACGTGAAATATTTTTTTATTTTTTTAT‑ATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                               <  1:8084458/126‑1 (MQ=255)
                                            tataataATTTATTTCCTCGTGATATATTTTTTTATTTTATAAT‑ATAAAAAAAAAAAAAAAAAAAAAACCCC‑ATAAAAA‑TT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                                 <  1:6327051/124‑1 (MQ=255)
                                              ttATAATTTATAACCTCGTTATATATTTTTTTATTTTTTTAT‑ATTAAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AA‑T‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTcc                                                                            <  1:9127316/128‑1 (MQ=255)
                                               taaaaattataTCCTAGTTATCTATTTTTTTTTTTTTTTAT‑ATTAAAAAAAAAAAAAAAAAAAAACCCCTTAAAAAT‑TA‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                               <  1:9393116/118‑1 (MQ=255)
                                                   ttttatattcttgTGATTTTTTTTTTTATTTTTTTAT‑ATTAAAAAATAAAAAAAAAACAATCCC‑‑‑‑‑AAAA‑AA‑A‑ATTAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                                      <  1:6982051/116‑1 (MQ=255)
                                                      tAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACAATATGTATTAACATTcccatttaa                                                                     >  2:957242/1‑122 (MQ=255)
                                                       ataaccTCGTTATTTATTTTTTTATTTTTTTAA‑TATAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                     <  1:5453856/124‑1 (MQ=255)
                                                        gATCATCGTGTTATATTTTTTTATTTTTTTAT‑ATTAAAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AAA‑AA‑T‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                  <  2:7364265/128‑1 (MQ=255)
                                                         ttactagttttttATTTTTTTTTTTTTTTAA‑ATTAACAAAAAAAAAAAAAAAAATCCCC‑TTAAAAA‑TT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                    <  1:3079865/116‑1 (MQ=255)
                                                         aaaattgtattatatttttttattttttTAA‑CATCACAAAAAAAAAAAAAAAAATCCC‑‑ATTAAAA‑AT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                   <  1:4758487/116‑1 (MQ=255)
                                                          ttatatttttttatttttttattttttTAT‑ATTAAAAAATAAAAAAAAAAAAAATACCCTT‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                  <  1:5630847/117‑1 (MQ=255)
                                                          tacagtttaTCTATTTTTTTTATTTTTTAT‑ATAAAAAAATAAAAAAAAAAAAATACC‑‑ATTAAAA‑TT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                  <  1:9251255/120‑1 (MQ=255)
                                                          taattggtttatATTTTTTTTTTTTTTTAA‑ATTAAAAAAAAAAAAAAAAAAAATCCACTT‑‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  2:3663051/117‑1 (MQ=255)
                                                           actcggtttaaaTTTTTTTTTTTTTTTAT‑ATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAA‑AT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  1:6130742/117‑1 (MQ=255)
                                                           aatttttatttttttttttatttttttaT‑ATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAA‑AA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  2:830707/116‑1 (MQ=255)
                                                            tatttttatatttttttttttttttTATAATTAAAAAATAAAAAAAAAAAAATCACATT‑‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTCCCTATTATACcac                                                                <  2:8843142/117‑1 (MQ=255)
                                                             tctggATCTATTTTTTTTTTTGTTTAT‑ATTCACAAAAAAAAAAAAAACAATACCCTT‑‑‑AAA‑AA‑T‑‑‑‑TTAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                           <  1:8546536/124‑1 (MQ=255)
                                                             actagATCTATTTTTTTATTTTTTTAT‑AATAACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AA‑T‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                             <  1:8638425/124‑1 (MQ=255)
                                                              agttatatATTTTTTAATTTTTTTAT‑ATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AAA‑AA‑T‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                            <  1:4573701/121‑1 (MQ=255)
                                                               tttaattttttttttattt‑ttttt‑atTAAAAAAAAAAAAAAAAAAAATTCC‑‑ATTAAAA‑AT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                            <  1:4334119/120‑1 (MQ=255)
                                                                 tttatatttttttattttttTAA‑CTTAAAAAAT‑AAAAAAAAACAAAACCC‑ATAAAAA‑TT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                           <  1:1026212/124‑1 (MQ=255)
                                                                 tataaatttttttatttttttAT‑ATTAAAAAATAAAAAAAAAAAAAACCCATT‑‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                          <  1:9574356/123‑1 (MQ=255)
                                                                   tatattttatttTTTGTTTTA‑ATAAAAAAATAAAAAAAAAA‑AATACACTTTAAAAATAA‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                           <  1:4437509/126‑1 (MQ=255)
                                                                   tCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTATTAAAATTAAAAATTATAAAACaatttatt                                                        >  1:1134731/1‑128 (MQ=255)
                                                                    taaTTTTTTTTTTTTTTTTT‑ATTATAAAATAAAAAAAAAAAAATTAGCTTT‑‑‑AA‑AA‑T‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                      <  1:3335287/126‑1 (MQ=255)
                                                                       tttttttattttttttt‑attAAAAAAAAAAAAAAAAAAAAAAACC‑CTTAAAA‑AA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                      <  2:8089018/128‑1 (MQ=255)
                                                                        ttttttatttttttat‑AATTAAAAAAAAAAAAAAAAAAAACACCTTT‑‑AAA‑AT‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                    <  2:8482398/128‑1 (MQ=255)
                                                                        ttatttATTTTTTTAA‑CTATAAAAAAAAAAAAAAAAAAATCCCC‑TTAAAAA‑TT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                     <  1:1870638/125‑1 (MQ=255)
                                                                          ttttATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACTCTTTTTATTAAAATTACCTATTATACCACATTTTATTTTTaaaaa                                                >  1:7250803/1‑127 (MQ=255)
                                                                            ttATTTTTTTAA‑ATTAAAAAAAAAAAAAAAAAAAAACCCCATAAAAAA‑TA‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                  <  1:7836105/128‑1 (MQ=255)
                                                                              atatttttAT‑ATTAAAAAAAAAAAAAAAAAAAAAACCC‑CTTAAAA‑AA‑T‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                             <  2:9238336/123‑1 (MQ=255)
                                                                              aTTTTTTTAA‑ATTAAAAAAAAAAAAAAAAAAAATACC‑‑ATTAAAA‑AA‑T‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                            <  1:5923163/128‑1 (MQ=255)
                                                                               ttttttTAT‑ATTAACAAATAAAAAAAAAAAAATACACTTT‑‑‑AA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                            <  1:4955385/128‑1 (MQ=255)
                                                                                    tttaaataaaaaaaTAAAAAAAAAA‑AAAAACCATTAAAAA‑TT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                          <  1:6543852/117‑1 (MQ=255)
                                                                                     tAT‑CTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATCTATTTGTTAAAATTCACATATATACCACATTTAAATTTTAAAAAAATATAttcaa                                     >  1:8770494/1‑125 (MQ=255)
                                                                                       tattaaaaaaaaaaaaaaaaaaaaATACCCTT‑‑‑AAA‑AA‑T‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                    <  1:3195409/120‑1 (MQ=255)
                                                                                        ttataaaaaaaaaaaaaaaaaaaATACCCTT‑‑‑AAA‑AA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                    <  2:1209429/121‑1 (MQ=255)
                                                                                          attaaaaaaaaaaaaaaaaaaATACCAA‑‑TAAAA‑AA‑T‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                                  <  1:4217276/123‑1 (MQ=255)
                                                                                           taaaaaaTAAAAAAAAAAAAATACCC‑TTAAAAA‑AT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                                   <  1:2576141/124‑1 (MQ=255)
                                                                                              aaaaTAAAAAAAAAA‑AAAACCCATTAAAAA‑AT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                                <  1:2152986/127‑1 (MQ=255)
                                                                                                aaaaaaaaaaaaaaaaaCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                             <  1:7192350/125‑1 (MQ=255)
                                                                                                  tAAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAACAATAATTATTAAAATAAAATAATAAAAAAAATTTTATTTTTAAAATAAGAAATTTAAATTatatatata                         >  1:8259796/1‑127 (MQ=255)
                                                                                                             aaaaaaacacttAAAA‑AA‑T‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                 <  1:6659380/118‑1 (MQ=255)
                                                                                                              aaaaacaacttaaaa‑at‑taaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                  <  1:5245171/119‑1 (MQ=255)
                                                                                                                   acacttAAAA‑ATTT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa             <  1:2460433/124‑1 (MQ=255)
                                                                                                                     acttAAAA‑AT‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc          <  1:2934136/126‑1 (MQ=255)
                                                                                                                       ttaaaa‑at‑taaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt         <  1:1462022/128‑1 (MQ=255)
                                                                                                                        cttaa‑aa‑a‑ataaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtat       <  2:77924/125‑1 (MQ=255)
                                                                                                                          aaa‑at‑t‑aaaaaaAAAAAAAAAAAAAAACAAAAAACAAAATATATTTATTAAAATAACAAATAATAAAAAATTTTTTTTTTAAAAAAATATATTTAAATAATAAATAtataaaatataaaaaaataaat     >  1:7698929/1‑120 (MQ=255)
                                                                                                                           aa‑aa‑t‑ttaaaaAAAAAAAAAAAAATACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAtt    <  2:2833706/128‑1 (MQ=255)
                                                                                                                           aa‑aa‑t‑‑aaaaaaAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTg   <  2:2475419/128‑1 (MQ=255)
                                                                                                                               |                                                                                                                                
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAA‑AA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGC  >  CP016816/202369‑202620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑