Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4960A.37.4% 592.0 / inf 560intergenic (+274/‑401)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (42/242);  new base . (5/165);  total (70/490)
Fisher's exact test for biased strand distribution p-value = 2.39e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1012 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AA‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCTAT  >  CP016816/202370‑202623
                                                                                                                                  |                                                                                                                                 
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAACAATCCCCtt‑‑‑aaa‑aa‑t‑aaaaa                                                                                                                               >  1:2960450/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAA‑AT‑T‑aaaaaaaa                                                                                                                            >  2:8600476/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAT‑‑‑CAAATAAAA‑AA‑T‑aaaaaaaa‑a                                                                                                                          >  2:4595199/1‑128 (MQ=255)
    attatttaattttaattaaAATAACATAAAATTAATAATTTTTATAATTTATATACTCGTGATATATTTTTTTAATTTTTTATCTTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaa                                                                                                                            <  1:87569/117‑1 (MQ=255)
     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATATATATCATCGTGATCTATTTTTTTATTTATTTATCTTAACAAAT‑AAAAAAAAAACAAACACC‑‑TAAAAA‑AA‑T‑aaaaaaaa‑a                                                                                                                          >  2:6838038/1‑128 (MQ=255)
     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACAC‑‑‑ATAAAA‑AA‑T‑aaaaaaaa‑aa                                                                                                                         >  2:955192/1‑128 (MQ=255)
      tagTTAATGGTAAATAAAAAAAAAAAAACTAAATAATTCTTATAATTTATATCCTCGTTAAATATTTTTTTTATTGTTTATCTTCAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaa‑aa                                                                                                                         <  1:8527671/127‑1 (MQ=255)
         ttAAGTTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTATTTTATCTACACAAAT‑AAAAAAAAAAAAAACCCATAaaaaaa‑aa‑a‑aaaaaaaa‑aaa                                                                                                                        >  2:2608469/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaa‑aaaaa                                                                                                                      >  2:3373525/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTATATCTTCAAAAAA‑AAAAAAAAAACAATCACC‑‑TTAAAA‑AT‑T‑aaaaaaaa‑aaaaaa                                                                                                                     >  1:5092560/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAA‑AT‑T‑aaaaaaaa‑aaaaaa                                                                                                                     >  1:8425480/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AA‑T‑aaaaaaaa‑aaaaaaaa                                                                                                                   >  2:2425109/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTATTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCC‑‑ATTAAAA‑AT‑T‑aaaaaaaa‑aaaaaaaa                                                                                                                   >  1:5531798/1‑128 (MQ=255)
            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTATATCTTAACAAAT‑AAAAAAAAAAAAAACCACTaaaaaaa‑aa‑a‑aaaaaaaa‑aaaaaa                                                                                                                     >  2:575251/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaa‑aaaaaaaaa                                                                                                                  >  2:8267936/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAACC‑‑TTAAAA‑AT‑T‑aaaaaaaa‑aaaaaaaaa                                                                                                                  >  1:6863712/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACAAATT‑‑‑AAA‑AA‑T‑aaaaaaaa‑aaaaaaaaaa                                                                                                                 >  1:6292076/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAAACAATACCCTT‑‑‑AAA‑AA‑T‑aaaaaaaa‑aaaaaaaaaa                                                                                                                 >  2:7540158/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCCCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TAAAAA‑AA‑T‑aaaaaaaa‑aaaaaaaaa                                                                                                                  >  2:3585271/1‑128 (MQ=255)
              gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAAAA‑AA‑T‑aaaaaaaa‑aaaaaaaaaa                                                                                                                 >  1:7820352/1‑128 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TAAAAA‑AT‑T‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                              >  1:2387431/1‑128 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCC‑‑‑ATAAAA‑AA‑T‑aaaaaaaa‑aaaaaaaaaaaaaa                                                                                                             >  2:1944295/1‑127 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCCC‑‑ATAAAA‑AA‑T‑aaaaaaaa‑aaaaaaaaaaaaaa                                                                                                             >  1:4755903/1‑127 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCATTAAAAAT‑Aa‑a‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                               >  1:832102/1‑128 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAAATCCTCGATATCTATTTTTAAATTTGATTAAATTAACAAAT‑AAAAAAAAAAAAAACCCaaaaaaaaa‑aa‑a‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                               >  2:5041155/1‑128 (MQ=255)
                   ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTAACAAAT‑AAAAAAAAAAAAAAAAC‑‑‑ATAAAA‑AA‑T‑aaaaaaaa‑aaaaaaaaaaaaaaaa                                                                                                           >  2:3066389/1‑125 (MQ=255)
                   ttaaAATACAATAAACTTAATTATTATTATAATTTATATACTCGTTATTTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTa                                                                                                           <  1:7933432/128‑1 (MQ=255)
                     taaaTAAAATTAAATTAATAATTTTTATAATTTATATAATAGTGATTTTTTTTTTTTTTTTTTTATATTAACAAAT‑AAAAAAAAAAAAATACCC‑‑ATAAAA‑AA‑T‑AAAAAAAA‑AAAAAAAAAAAAACTaa                                                                                                          <  1:9463380/127‑1 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaa‑aaaaaaaaaaaaaaaaa                                                                                                          >  1:8056037/1‑124 (MQ=255)
                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑aaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                         >  1:8704062/1‑123 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAA‑AT‑T‑Aaaaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                        >  2:5262963/1‑128 (MQ=255)
                         taaaataaaaataaaaAATATTAAAATTTATATACTAGTTATCTAATTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AA‑T‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAaaacaaa                                                                                                   <  1:1476294/124‑1 (MQ=255)
                              tAAAATTAATAATTATTTAAATTTATATCATCTTTATATTTTTTTTTATTTTTTTAAATTAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAA‑AA‑T‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                              <  1:5227692/128‑1 (MQ=255)
                                aaattAATAATTATTATAATTAAGATAATATTTATATATTTTTTTATATTTTTAAAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAActct                                                                                               <  1:4180678/125‑1 (MQ=255)
                                aaattAAAAATTCTTAAAATGTATATCCTCGTTAAATATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAActc                                                                                                <  1:7364138/125‑1 (MQ=255)
                                aaattAAAAATTATTAAAATTTAAAACCTATTTATATAATTTTTTATTTTTTTAAAATAAAAAAT‑AAAAAAAAAACAAAACCCTT‑‑‑AAA‑AA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                              <  1:6471047/125‑1 (MQ=255)
                                aaattAAAAATACTTATAATTTATATCATATTTATCATATTTATTATTTTTTTAAATTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                              <  1:9321497/125‑1 (MQ=255)
                                  attAATAATTTATAAAATTTATAAACTTGTTATTTTTTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAATACC‑‑ATTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                             <  2:4355724/127‑1 (MQ=255)
                                  aataataaTTATTATAATTTTTATCCATCTGTTATATTTTTTTATTTGTTTATAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑AA‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                             <  2:4782980/126‑1 (MQ=255)
                                   ttAATAATTATTATAATTTTAAAACTATTTATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑ATAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                                            <  1:3175938/128‑1 (MQ=255)
                                    atataatTATAATAATTTATAACATCTTTATATATTTTTTTAATTTTTAAAATTAAAAAAA‑AAAAAAAAAACAATCCCCAT‑‑‑AAA‑AA‑T‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                                         <  1:4038382/126‑1 (MQ=255)
                                       taatTCTTATAATTTATATCATTTGTATCTTTTTTTTTTTTTTTTTAATTTAAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAA‑AA‑T‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                                     <  2:2224697/128‑1 (MQ=255)
                                          tttttATAATTTATATACTATTTATATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                                     <  1:3439969/125‑1 (MQ=255)
                                                  atttAGATACTCGTTTTCTTTTTTTTTATTTGTTTATATTAACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AA‑T‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta‑tta                                                                         <  1:8246127/125‑1 (MQ=255)
                                                   tttAGATCCACGTTTTCAATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AA‑T‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta‑tta                                                                         <  2:8831027/126‑1 (MQ=255)
                                                   tGTAGATCCCCGTTATCATATTTTTTATTTGTTTAAATTCACAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta‑tt                                                                          <  1:7585502/128‑1 (MQ=255)
                                                      acttactctTGATCTATTTTTTTTTTTTTTATTATACAAAAAA‑AAAAAAAAAAAAATACCAATAAAAAT‑TA‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta‑tt                                                                          <  2:6286641/123‑1 (MQ=255)
                                                        ttactagttttttATTTTTTTTTTTTTTTAAATTAACAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAA‑TT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑Ttata                                                                       <  1:3079865/116‑1 (MQ=255)
                                                        attatttttttttatttttttattttttTTTATTAACAAAT‑AAAAAAAAAAAAATACCATT‑‑‑AAA‑AA‑T‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACcac                                                                   <  2:404598/116‑1 (MQ=255)
                                                           atttttttatatttttttattttttTATATTCAAAAAT‑AAAAAAAAAAAAAAACCC‑TTAAAAA‑TT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACca                                                                    <  1:7176682/119‑1 (MQ=255)
                                                           atcttttataatttttttatttttttAAAATAAAAAAA‑AAAAAAAAAAAAAAACCCATAAAAAATAA‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATAc                                                                      <  1:2577267/118‑1 (MQ=255)
                                                           atatttttatatttttttattttttTTTATTAAAAAAT‑AAAAAAAAAAAAATCAACTTAAAAAT‑TA‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATAcc                                                                     <  1:8945195/119‑1 (MQ=255)
                                                            tttttttattttttttttttttttttttttAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAA‑AA‑T‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattt                                                               <  2:7727660/118‑1 (MQ=255)
                                                            ttttGATATAATTTTTTATTT‑TTTTTATATAAAAAA‑AAAAAAAAAAAAAAACCCCATAAAAA‑AT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACcac                                                                   <  1:455234/125‑1 (MQ=255)
                                                            aagttttCTATTTTTTTTTTTTTTTATATTAAAAAAT‑AAAAAAAAAACAATACCCTTT‑‑AAA‑AA‑T‑‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatt                                                                <  1:7455879/122‑1 (MQ=255)
                                                             catgttcatattttttatttttttatCTTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑‑TAAAA‑AA‑‑‑ATAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattt                                                               <  2:9350803/118‑1 (MQ=255)
                                                              tttttatATTTTTTTTTTTTTTTATATTTAAAAAA‑AAAAAAAAAAAAAAACAC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatt                                                                <  1:729582/122‑1 (MQ=255)
                                                              gttttttatttttttattttttTTTTTTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑‑AA‑AA‑T‑TTAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatttt                                                              <  2:7991321/122‑1 (MQ=255)
                                                               tGATCTATTTTTTTATTTGTTTATATTAACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatttt                                                              <  1:9236117/128‑1 (MQ=255)
                                                                tttatatttttttattttttTAACTTAAAAAAT‑‑AAAAAAAAACAAAACCC‑ATAAAAA‑TT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatttt                                                              <  1:1026212/124‑1 (MQ=255)
                                                                tatttatttttttattttttTATATTAAAAAAT‑AAAAAAAAAACAATACCATT‑‑‑AAA‑AA‑T‑‑‑‑‑‑TAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTAttttt                                                        <  1:1244039/124‑1 (MQ=255)
                                                                  tatattttatttTTTGTTTTAATAAAAAAAT‑AAAAAAAAAA‑AATACACTTTAAAAATAA‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatttt                                                              <  1:4437509/126‑1 (MQ=255)
                                                                      ttttttttttttttTATTTTAAAAAAT‑AAAAAAAAAAAAAAACC‑‑ATAAAAA‑AT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTAttttt                                                        <  2:8075239/128‑1 (MQ=255)
                                                                      ttttttttttttttTAAATTAAAAATA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑AA‑T‑‑‑‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaaa                                                     <  2:9462552/128‑1 (MQ=255)
                                                                       ttttttattttttaTTATTAAAAAAA‑AAAAAAAAAACAAATCCCTT‑‑‑AAA‑AA‑T‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaaaa                                                    <  1:4313260/128‑1 (MQ=255)
                                                                       ttttttattt‑tttaTAAT‑AAAAAA‑AAAAAAAAAAAAAAAACCATAAAAAA‑AT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTa                                                       <  2:7854286/128‑1 (MQ=255)
                                                                        ttttttttttttTATATTTAAAAAT‑AAAAAAAAAAAAATACCCATT‑‑‑AA‑AA‑T‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaaa                                                     <  1:536669/128‑1 (MQ=255)
                                                                        tttttATTTTTTTATAATAACAAAA‑AAAAAAAAAAAAAATCCC‑CTTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTa                                                       <  1:1143096/128‑1 (MQ=255)
                                                                         ttttttttttttAT‑TTAAAAAAA‑AAAAAAAAAAAAAACCCAAAAAAAAA‑TA‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaa                                                      <  1:954089/128‑1 (MQ=255)
                                                                            ttttttttTATCTTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AA‑T‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAg                                                <  1:3692427/126‑1 (MQ=255)
                                                                            tATTTTTTTATATAAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATa                                                  <  2:1411437/128‑1 (MQ=255)
                                                                            tATTTGTTTATATTAACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATa                                                  <  1:2799726/128‑1 (MQ=255)
                                                                             atatttttATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑CTTAAAA‑AA‑T‑‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAg                                                <  2:9238336/123‑1 (MQ=255)
                                                                                 gttttatataaaaaaT‑AAAAAAAAAAAAAATCAC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGata                                             <  1:8635502/116‑1 (MQ=255)
                                                                                  tttATCTTCACAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑AT‑T‑AAAAAAAATAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGata                                             <  2:3262083/128‑1 (MQ=255)
                                                                                     aTCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAA‑TAAAAAAAAAATATATTTTTTAAAATTAACAA‑TTATAACAAATTTTTTTTTTTAAATAAAatatatat                                        >  2:7410510/1‑124 (MQ=255)
                                                                                      tCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAA‑AAAAAACAAACAATATATATAAAAAAACCATA‑AAAAACAAAATATTATTTTTAAAAAAAAAAAtttcaa                                       >  2:4955385/1‑124 (MQ=255)
                                                                                       tttaaaaaaa‑aaaaaaaaaaaaATCCCC‑‑TTAAAA‑AA‑T‑‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACat                                      <  1:8850945/122‑1 (MQ=255)
                                                                                         ttcaaaaT‑AAAAAAAAAAAAAAAACCCTATAAAA‑TT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAATATATTGACa                                       <  1:580915/124‑1 (MQ=255)
                                                                                          aaaaaataaaaaaaaaaaaaATACAC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACata                                     <  1:1896028/120‑1 (MQ=255)
                                                                                            aaaaa‑aaaaaaaaaaaaATACCCTT‑‑‑AAA‑AA‑T‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                                <  1:7678886/127‑1 (MQ=255)
                                                                                            aaaaT‑AAAAAAAAAA‑AAAACCCATTAAAAA‑AT‑A‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACataat                                   <  1:2152986/127‑1 (MQ=255)
                                                                                                t‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AA‑T‑‑TAAAAAA‑AAAAAAAAAAAAACAAAAAAAAAAAACTATTTATTAAAATACCCTA‑TTAAACAAAATTTAATTTTTAAAAAAAAATATTAAAATAatataaata                            >  1:8177638/1‑127 (MQ=255)
                                                                                                        aaaaCAATCCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAA‑AAAAAAAAAAAAACAAAAAACAAACACTTTTTATTAAAATACCATA‑TTAAACCCAAATTTATTTTTAAAAAAATAT‑TTTACATAA‑ATATATATAaaatta                    >  2:7245003/1‑126 (MQ=255)
                                                                                                        aaaaCAATCCCCTT‑‑‑AAA‑AA‑T‑TAAAAAAA‑AAAAAAAAAAAA‑‑TAAAAAAAAAATAAATTTATTAAAATTAAATA‑TTATAACACATTTTATTTTTAAAAAAAAATATTTACATAAAATATATCAAatatat                    >  1:608618/1‑128 (MQ=255)
                                                                                                         aaaCAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAA‑‑AAAAACAACCGGTTTTTTTTAAAATTCCGAA‑TTAAACCCAATTTTTTTTTTAAAAAAAGATATTTACTAAATATATATATAatatat                    >  2:8429060/1‑128 (MQ=255)
                                                                                                          aaCAATCCCCTT‑‑‑AAA‑AA‑T‑T‑AAAAAA‑AAAAAAAAAAAAACAAAAAACATAC‑AAATGTGTTAAAATTACCGATTTAATCCAATTTATATTTTTAAAAAAATAAATTTATATAatataaataaattataat                   >  2:9040892/1‑118 (MQ=255)
                                                                                                          aaCAATCCCC‑‑TTAAAA‑AT‑T‑AAAAAAAA‑AAAAAAAAAAAAA‑TAAAAACAAAAAATATTTATAAAAATTACAAT‑ATAAAAAAAATTTTATTTTAAAAATAATATATTAAAATAatatataaataaaaaat                    >  1:7250336/1‑118 (MQ=255)
                                                                                                             aaaaataccctaaaa‑aa‑a‑taaaaaaa‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                    <  2:8664632/118‑1 (MQ=255)
                                                                                                             aaaaaacacaataaa‑aa‑t‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                    <  1:665826/116‑1 (MQ=255)
                                                                                                              acaaaaaatttaaa‑at‑t‑taaaaaAA‑TAAAAAAAAAAAACTAAAAACAAAATCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata                   <  1:979165/117‑1 (MQ=255)
                                                                                                              aaatacccattaaa‑aa‑t‑‑aaaaaaA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                  <  1:4914564/117‑1 (MQ=255)
                                                                                                                  acacttAAAA‑ATTT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa                <  1:2460433/124‑1 (MQ=255)
                                                                                                                     attAAAA‑AA‑T‑‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta           <  1:7752568/127‑1 (MQ=255)
                                                                                                                       taaaa‑at‑taaaaaaAAA‑AAAAAAAAAAAAAATAAAAACAAAGACTATTAATTAAATTTCACTT‑TAATACAAATTTTTATTTTAAAAAAAATATATTTACATAATATAAATATAATATAAATAATAcat           >  2:7335030/1‑126 (MQ=255)
                                                                                                                       taaaa‑at‑t‑aaaaaaAA‑AAAAAAAAAAAAA‑‑AAAAACAAAAACTATTTATTAAAATACCCTA‑TTAAACAAAATATTATTTTAAAAATAAGATATTAAAATAATATATTTATAATATATATAAAAatatat        >  1:3321342/1‑128 (MQ=255)
                                                                                                                        aaaa‑aa‑t‑‑aaaaaaA‑AAAAAAAAAAAAACTAAAAACACACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATATTAGATATatattatgtcaa        <  1:9079373/128‑7 (MQ=255)
                                                                                                                           a‑aa‑t‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTg      <  2:817679/128‑1 (MQ=255)
                                                                                                                               ttaaaaaaaaa‑aaaaaaaaaaaaaCTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGc     <  2:1171366/125‑1 (MQ=255)
                                                                                                                               tt‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCt    <  1:174496/127‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                 
ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AA‑T‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCTAT  >  CP016816/202370‑202623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑