Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA43.7% 2797.1 / inf 3364intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (617/1203);  new base A (1189/224);  total (1829/1535)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 3456 total aligned reads displayed.

AGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420126‑420380
                                                                                                                                      |                                                                                                                               
  aaaaCTACTATCACTTTTTTAAAAAATTTTTAATTTTAAAAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATAATTATCTATTAATCAA‑ATTTA‑TGCT‑CG‑‑‑‑TTTTTTTTTTTTTTTT‑ACaaa                                                                                                                              <  2:7944095/128‑1 (MQ=255)
   aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGAT‑‑A‑‑‑TTTTTTTTTTTTTTTTT‑aaaaaa                                                                                                                             >  1:5839686/1‑128 (MQ=255)
    aaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGAT‑AG‑‑‑TTTTTTTTTTTTTTTTT‑aaaaaa                                                                                                                             >  1:5448778/1‑128 (MQ=255)
       aataataaattatttAAAAAATTTTAAATTTTATTAAATTATTTATTTTTTAATTTTTTAAATTATTTTAAAAAAATTATTTTTTTATTAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAata                                                                                                                          <  2:6135083/116‑1 (MQ=255)
         atagactttttttAAAAATTTTTTATTTTAAATAA‑TTTATTTTTTTTTAAATTGTTAAAAAATTTTAAAATAAATATATATAAAAAAA‑ATTTATTGCT‑‑G‑‑‑GTTTTTTTTTTTTTTTT‑ACAAAAATATaa                                                                                                                       <  2:567236/121‑1 (MQ=255)
          taGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑‑TTTATTTTTTTTTTTT‑A‑AAAAATATAatt                                                                                                                     >  1:2084806/1‑128 (MQ=255)
           aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CGT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAatatta                                                                                                                       >  2:4628674/1‑126 (MQ=255)
           aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAAAAAAat                                                                                                                      >  1:5166083/1‑128 (MQ=255)
            gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑TTAAAAaaattaaa                                                                                                                     >  2:3828368/1‑124 (MQ=255)
              aattttttAAATAATTTTTAATTTTATTAAATTAATTTTTTTTTTAATTTTTTAATTATTTTAAAATAATTATATTTTAATAAA‑TTTTA‑TTTT‑AG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAattta                                                                                                                   <  1:7080659/126‑1 (MQ=255)
              aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CT‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAattta                                                                                                                   >  1:1118468/1‑128 (MQ=255)
               cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAatttat                                                                                                                  >  2:7434191/1‑128 (MQ=255)
               cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑‑TTTTTTTTTTTTTTTT‑AAAAAAATATAatttatt                                                                                                                 >  1:6058896/1‑128 (MQ=255)
                ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CGT‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAatatat                                                                                                                  >  2:2169248/1‑128 (MQ=255)
                    ttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TTCT‑CT‑‑‑TTTTTTTTTTTTTTTTTAAAAAAAATTAAatttatttat                                                                                                              >  2:835965/1‑126 (MQ=255)
                         aatttttAATTTAAAATAA‑TTAATTTTTTTTAAAATTTTTAAATTTTTTTAAAATATTTAT‑TAATAATTAA‑ATTTT‑TTTT‑TT‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGt                                                                                                      <  1:8331121/125‑1 (MQ=255)
                         aaaTTTTTAATTTTAATAAATTATTTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAA‑TTTTA‑TGCT‑AG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAAc                                                                                                        <  1:4180365/128‑1 (MQ=255)
                          aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTAATTAAACg                                                                                                       >  1:9492402/1‑128 (MQ=255)
                             ttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTtat                                                                                                    >  2:3386903/11‑128 (MQ=255)
                              tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTTTTTTATTAAAAGtata                                                                                                   >  2:5898987/10‑128 (MQ=255)
                               ttaattttaatAACTTAATTATTTTTCAAATTGTTAAATTATTTTTAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTatat                                                                                                  <  1:1002820/120‑1 (MQ=255)
                                   ttttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CGTT‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAAGTATAttt                                                                                                >  1:7843244/5‑128 (MQ=255)
                                      taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATAAATTTTATTTTATTAAACGTTAATTTAtttt                                                                                           >  2:1972818/2‑128 (MQ=255)
                                         taaatttatttttTTTTAAATTTTTATATTTTTTTAAAATAATTTTTTATTAATAAA‑TTTTT‑TTTT‑TGT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTta                                                                                         <  2:4955164/121‑1 (MQ=255)
                                         tAAATGTATTATTTTTTTTATTGTTTATATTTTTTAATATAATTATTTATTTATTAA‑TTTTT‑TTTT‑TG‑‑‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTGATGTTtaat                                                                                       <  2:3013026/128‑1 (MQ=255)
                                            atttattattTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAA‑TTTTA‑TTTTATT‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaata                                                                                      <  1:8692990/124‑1 (MQ=255)
                                             ttattttttttttAAATTTTTTAATTATTTTAAAATTTTTATTTTTTTATTAT‑TTTTA‑TTTT‑AG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATaaa                                                                                    <  1:3417252/121‑1 (MQ=255)
                                               tatttttTTTTAAATTTTTTAATTTATTTAAAATAATTTTATTTTTATTAA‑TTTTT‑TTTT‑TT‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATaaaaa                                                                                  <  1:2698736/127‑1 (MQ=255)
                                                gttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTA‑AAAAAAATAAAATTTATTTTATTAAAATTATATTTTTGTTTAAAAAAAAt                                                                                 >  1:5321460/2‑128 (MQ=255)
                                                 ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAATTATATTTATTTTTAATAAAAAtt                                                                                >  1:5633891/1‑127 (MQ=255)
                                                 ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTA‑AAAAAAAAATAATTTATTTTATAAAACTTAATTTTATTTTTAATAAAAAtt                                                                                >  2:2670335/1‑127 (MQ=255)
                                                  ttttttttAAATTTTTTAATTTTTTTTAAATAATTATTAATTTATAAA‑TTTTT‑TTTT‑TT‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATgg                                                                               <  1:688812/126‑1 (MQ=255)
                                                  ttttttttAAATTTTTATATTTTTTTTAAATATTTATTTTTTAATTAA‑TTTTT‑TTTT‑TT‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATgg                                                                               <  2:1710786/126‑1 (MQ=255)
                                                      ttttaaatttttaaatTTTTTTAAATTTATTATTTATTAATATA‑TTTTT‑TTTT‑TT‑‑‑TTTTTTTTTTTTTTTTT‑ACATAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaaa                                                                           <  1:1707810/128‑1 (MQ=255)
                                                        tCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGAT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑TAAAAAAAATAATTTATTTTATTAAAATTATATTAATTTTTAATTAAAAAGTaaaata                                                                         >  2:8775946/1‑126 (MQ=255)
                                                         gaaaTTGTTAAATTATTTTCAAATAATTATATATTACTCAA‑TTTTA‑TTCT‑AG‑‑‑‑‑‑‑TTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTg                                                                    <  1:4889060/127‑1 (MQ=255)
                                                          tattttttAAATTTTTTTTAAATAATTTTTTTTTTATTAA‑TTTT‑‑TTTT‑TA‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTATAATTATATTTATTTTTAATAAAAATGTAatagaaag                                                                      <  2:7080563/122‑1 (MQ=255)
                                                           aaTTGTTAATTTTTTTTTAAATTATTTTTTTTTTATAAA‑TTTTA‑T‑TT‑TT‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGt                                                                     <  2:284347/128‑1 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTTTTTTATTAAACTTATATTTTTTTTTAATAAAATTGGAaaagaaat                                                                      >  2:7799016/1‑127 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTATTTTTATTTTTAATAAAAATTTaaaaaaaat                                                                      >  2:9388509/1‑127 (MQ=255)
                                                             ttttttatattttttCAAATACTTTTATATTAATAAATTTTTA‑TG‑T‑GT‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTg                                                                    <  2:1178143/117‑1 (MQ=255)
                                                             ttGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAAGtt                                                                    >  1:321853/1‑127 (MQ=255)
                                                               ttttaaTTATTTTTAAATAATTATTTTTTAATAAA‑TTTTT‑TTTT‑AT‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGaa                                                                  <  1:2290059/124‑1 (MQ=255)
                                                                ttAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTA‑AAAAAAATTTAATTAATTTTTTTAAAATTTTATTTATTTTTAATAAAAATTAAaaataaatttatt                                                                 >  1:4555131/1‑122 (MQ=255)
                                                                    attattTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CGT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACTTATATTTTTTTTTAATAAAAATGAAAAAAAaattgaattga                                                              >  1:9198139/1‑127 (MQ=255)
                                                                    attattTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CGT‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTATTTTTTTTTTTAATAAAAATTTAAAATAAATTTAAtttt                                                              >  1:2550670/1‑126 (MQ=255)
                                                                      tattTTAAAATCATTATTAATTAATAAA‑TTTTA‑TTTT‑AT‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCat                                                           <  2:7262405/128‑1 (MQ=255)
                                                                        ttttCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CGT‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATAAAATTAATTTAATTAAACGTATTTTTATTTTATAAAAAAATGAAAAAGAATTTAAATTGACaaa                                                          >  2:4822383/1‑126 (MQ=255)
                                                                        ttttCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGTAAAAGAAAGTGAATTTTCataa                                                         >  1:1287169/1‑128 (MQ=255)
                                                                        ttttCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTA‑AAAAAAATATAATTTATTTTATTAAAATTATATTTATTTTTAAAAAAAATTTAAAAtaaattaaatattaaaaa                                                         >  2:5115139/1‑120 (MQ=255)
                                                                        ttttCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑‑‑TTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAAGTAAATTTTCataata                                                       >  1:6639591/1‑128 (MQ=255)
                                                                         tttCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATAATATTTATATGTTTAAACTAATATTTTTTTTTAATAAAAATGTAAAACAAATAAAATTTTCataat                                                        >  2:2359369/1‑128 (MQ=255)
                                                                                 cATTATCTATTAATCAA‑TTTTA‑TGCT‑CGTTTTTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAAGTATATTTATTTTTATTAAAAATTGAAAAGAAAGTTAATTTTAAAAAtaattt                                                   >  2:8503465/1‑128 (MQ=255)
                                                                                   ttttttATTTATAAA‑TTTTT‑TTCT‑TGT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAAtaatttaatt                                               <  1:8026019/123‑1 (MQ=255)
                                                                                      ttatttAATAAA‑TTTTA‑TGTT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAat                                           <  2:9244046/124‑1 (MQ=255)
                                                                                       cTATTAATCAA‑TTTTA‑TGCT‑CGT‑‑TTTTTTTTTTTTTTTTT‑AAAAAAAAATAATTTATTTTATAAAAAGAAATTTAATTTTTAAAAAAAATTAAAAAAAAAGATAATTTAAATAATATTTAAATaaaaa                                           >  1:8173897/1‑127 (MQ=255)
                                                                                         aTTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATTTAATTTATTTTATTAAACGTATATTATTTTTTAATAAAAATTGAAAATAAAATAAATTGTAATAATAATTTAATTAAaaata                                        >  1:9347467/1‑128 (MQ=255)
                                                                                         aTTAATCAA‑TTTTA‑TGCT‑CG‑‑‑‑TTTTTTTTTTTTTTTT‑ACAAAAATAAAATTTATTTTATTAAACTTAAATTTATGTTTAATAAAAATGTAAAAAAAAGTGAATTTTCATAAAAATTTAATAAAatatat                                       >  2:3615237/1‑128 (MQ=255)
                                                                                          ttAATCAA‑TTTTA‑TGCT‑CGT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATATATTTTTTTATTTAACTTATTTTTATGTTTAATAAAAATGTAAAAGAAATTAAATTGTAATAAAAatttaatttaattta                                        >  2:8909710/1‑128 (MQ=255)
                                                                                              tCAA‑TTTTA‑TGCT‑CG‑‑‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATTTTTATGTTTAATAAAAATGTAAAAGAAAGTTAATTGTAAAAATAATTTAATTAAATATATAACaa                                  >  1:7246775/1‑128 (MQ=255)
                                                                                               cAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATTTAATTTATTTGATTAAACGTTTATTTATGTTTAATAAAAATGGAACAAAAAGTGAATTGACTTATTAATTTAATAAAATAAATAACaa                                  >  2:6700978/1‑128 (MQ=255)
                                                                                                 a‑TTTTA‑TGCT‑CGTT‑TTTTTTTTTTTTTTTTT‑AAAAAAATTAAATTTATTTTTTTAAAATTTATTTTTTTTTTAATAAAAATAAAAAAAAAAATAATTTTAAAAAATAATTTAATTAAATTTATAaaaa                                  >  1:3829518/1‑128 (MQ=255)
                                                                                                 a‑TTTTA‑TGCT‑CGT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATAAAATTTATTTTATTAAACATTTTTTTTTTTTTAAAAAAAATGGAAAAAAAATTTATTTTTAATAATAAATTAATTAAATATAaaaaaaa                                 >  2:1044436/1‑127 (MQ=255)
                                                                                                      ttttttttag‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTa                              <  2:8242885/119‑1 (MQ=255)
                                                                                                         tGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATAAAATTTATTTGATTAAACGTATTTTTATTTTTATTAAAAATGTAAAATAAATTTAATTTAAAAAAAAATTTAATTAATTATAAAAAaatttaattt                          >  1:6418848/1‑128 (MQ=255)
                                                                                                         tGCT‑CG‑‑‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACGTATATTTATGTTTAATAAAAATTGAAAATAAATTTAATTGTAATAATAAATTAATTAAATATAAAAAAATTTattttt                         >  2:4093471/1‑123 (MQ=255)
                                                                                                           at‑CG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATTATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtttt                        <  1:2395605/127‑1 (MQ=255)
                                                                                                            tttttttttttttttttttttttt‑AAATAAATATTATTTATTTGATTATAATTTTATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGt                           <  2:6403051/121‑1 (MQ=255)
                                                                                                             ttatgctcgtttttttttttttt‑ACAAAAATATAATTTATTTGATTAAAGGTATATTTTTGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATATTTTATTTAAATATATAACAATGTTAGtt                          >  2:4372955/10‑128 (MQ=255)
                                                                                                             tatattttttttttttttttttt‑AAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAGAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtt                          <  1:3609021/122‑1 (MQ=255)
                                                                                                              tttttttttttttttttttttt‑AAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGttt                         <  2:5361190/123‑1 (MQ=255)
                                                                                                              cG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATTTTTTTTTTTAATAAAAATTTAAATTAAATTTAATTTAAATAAAAATTTAATTAAAAATAAAAAAATTTAA‑TTTTaaa                     >  1:3997868/1‑128 (MQ=255)
                                                                                                              cG‑‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATAAAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGGAAAAAAAATTTAATTTTAATAATAATTTAATTAAATATAAAACAATTTAATttttta                      >  1:5013379/1‑126 (MQ=255)
                                                                                                               g‑‑‑TTTTTTTTTTTTTTTTA‑AAAAAAAAATAATTTATTTTATTAAACGTTTATTTATTTTTAATAAAAATGAAAAATAAATTGAATTTTAATAAAAATTTAATTAAATAAATAAAAATTTAATTTTTaaa                     >  1:9603375/1‑128 (MQ=255)
                                                                                                                tttttttttttttttttttt‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  1:8435334/125‑1 (MQ=255)
                                                                                                                tttttttttttttttttttt‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:2475234/125‑1 (MQ=255)
                                                                                                                tttttttttttttttttttt‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:3203684/125‑1 (MQ=255)
                                                                                                                tctttttttttttttttttt‑ACAAAAATATTATTTATTTGATTTTACGTATATTTATGTTTAATAATAATGGTATAGATAGTGAATTGTCATATTAATTTAATTATATATATAACAATGTAAGTTTTa                       <  1:4721964/125‑1 (MQ=255)
                                                                                                                gctcgttttttttttttttt‑AAAAAAAAATAATTTATTTTATTAAAAGTTTATTTATGTTTAATAAAAATTGAAAATAAATTGAAATTTAAAAAAAATTTAATTAAATATATAAAAATTTAATTTTTa                       >  2:9071305/6‑128 (MQ=255)
                                                                                                                cttgtttttttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:7655927/124‑1 (MQ=255)
                                                                                                                  tttttttttttttttttt‑ACAAAAATAAAATTAATTTGATTAAACTTATTTTTATTTTTAATAAAAATGGAAAATCAAGTGAATTGTCATAATAATTTAATAAAATATATAAAAATGTAAGTTTaaaa                     >  1:7494855/2‑128 (MQ=255)
                                                                                                                  cgtttttttttttttttt‑ACAAAAATATAATTTTTTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAATAAAGTGAATTTTCATAATAATTTAATTAAATATTTAACAATGTAAGTTTTaaa                     >  1:3126719/3‑128 (MQ=255)
                                                                                                                   ttttttttttttttttt‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTaaaa                    <  1:9079936/128‑1 (MQ=255)
                                                                                                                   gtttttttttttttttt‑ACAAAAATATAATTTTTTTGATTAAACGTATATTTATGTTTAATAAAAATGTAAAAGAAAGTGAATTGTAATAATAATTTAATTAAATATATAACAATGTAATTTTTaaaa                    >  1:2972467/2‑128 (MQ=255)
                                                                                                                   gtttttttttttttttt‑AAAAAAATTTAATTTATTTTTTTAAACTTATTTTTTTTTTTATTAAAAATGTAAAATAAATTTATTTTAAATAATAATTTATTTAAATAATTAAAAATTTAATTTTTaaaa                    >  1:4334241/2‑128 (MQ=255)
                                                                                                                    tttttttttttttttt‑AAAAAAAAATAATTAATTTGATTAAACTTATTTTTATTTTTTATAAAAAATAAAAAGAAATTGAATTGTAATAATAATTTAATTAAATTTAAAAAAATATAAATTTTTAAac                   >  1:2860361/1‑128 (MQ=255)
                                                                                                                     ttttttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGTAATAATAATTTAATAAAATATAAAACAATTTAATTTTTAAAact                  >  1:7599897/1‑128 (MQ=255)
                                                                                                                     ttttttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAact                  <  1:7369580/128‑1 (MQ=255)
                                                                                                                      tttttttttttttt‑ACTAATATATATTTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                 <  1:8943398/128‑1 (MQ=255)
                                                                                                                       ttttttttttttt‑AAATAAATATAATTTATTTGATTATTTTTATATTTATTTTTATTAAAAATTTAAAAGAAAGTGATTTTTAATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta                <  2:1348659/128‑1 (MQ=255)
                                                                                                                        tttttttttttt‑AAATTAATATAATTTATTTGATTAAAATTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttac               <  1:881603/128‑1 (MQ=255)
                                                                                                                        tttttttttttt‑AAAAAAATTTAATTTATTTTATTAAACGTATATTTTTTTTTAATAAAAATGTAAAAAAAATTTAATTTTAATAAAAATTTAATTAAATATATAACAATTTAATTTTTAAAaattac               >  1:6233599/1‑128 (MQ=255)
                                                                                                                         ttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact              <  1:857126/128‑1 (MQ=255)
                                                                                                                           ttttttttt‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAATTTAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt            <  1:1487409/128‑1 (MQ=255)
                                                                                                                             ttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTTTTTTTAATAAAAATGTAAAAGAAATTTAATTTTAATAATAATTTAATTAAATATATAAAAATTTAAGTTTTAAAAATTAAttttt          >  1:7709358/1‑128 (MQ=255)
                                                                                                                             ttttttt‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt          <  2:9506502/128‑1 (MQ=255)
                                                                                                                              tttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTTTGTTTAATAAAAATGGAAAAGAATGTGAATTGTCATTATATTTAATTTAAATTTTTAACAATGTAATTTTTAAAACTTACtttttt         >  2:8085930/1‑128 (MQ=255)
                                                                                                                               ttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAAAAAAAATGGAAAAGAAATTGAATTGTAAAAATAATTTTATTAAATAAATAAAAATTAAATTTTTAAAACTAAAttttttt        >  2:8635140/1‑127 (MQ=255)
                                                                                                                                tttt‑ACAAAAATATAATTTTTTTGATTAAACGTATTTTTTTTTTTAATAAAAATGGAAAAGAAAGTTATTTGTCATAATAATTTATTTAATTTTATAACAATGTAAGTTTTAAAACTTAAtttttttt       >  1:1866130/1‑126 (MQ=255)
                                                                                                                                 ttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTTTCATAATAATTTAATTAAATATATAAAAATGTAATTTTTAAAAATTAATtttttttt      >  2:7556237/1‑128 (MQ=255)
                                                                                                                                      |                                                                                                                               
AGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑TGCT‑CG‑‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420126‑420380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑