BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP016816	420,163	2 bp→TT	intergenic (‑446/+396)	JCVSYN2_01895 ← / ← JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,163	0	A	T	99.4%	11764.5 / NA	3754	intergenic (‑446/+397)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (13/10); new base T (2012/1711); total (2025/1729)
Fisher's exact test for biased strand distribution p-value = 8.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP016816	420,164	0	A	T	98.7%	10546.0 / NA	3726	intergenic (‑447/+396)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (11/39); new base T (1998/1677); total (2010/1716)
Fisher's exact test for biased strand distribution p-value = 4.90e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 3766 total aligned reads displayed.

TTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTA  >  CP016816/420039‑420287

||

  cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATa                                                                                                                           <  1:9479069/128‑1 (MQ=255)

  cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATa                                                                                                                           <  2:5701575/128‑1 (MQ=255)

  cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATa                                                                                                                           <  2:4198153/128‑1 (MQ=255)

   attcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTtaataa                                                                                                                          >  2:5318310/1‑128 (MQ=255)

    ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAAc                                                                                                                         >  2:1293748/1‑128 (MQ=255)

     tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACt                                                                                                                        <  2:8922216/128‑1 (MQ=255)

     tcatACTTTTAGTCTCATAAATATAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACt                                                                                                                        <  1:6999743/128‑1 (MQ=255)

       atACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGa                                                                                                                      <  2:7212742/128‑1 (MQ=255)

         aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAat                                                                                                                    <  1:3448116/128‑1 (MQ=255)

           ttttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAatta                                                                                                                  >  2:7798056/1‑128 (MQ=255)

            tttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATCTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAattat                                                                                                                 <  1:2805885/128‑1 (MQ=255)

             ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAattatt                                                                                                                <  2:231802/128‑1 (MQ=255)

             ttAGTCTCATAAAGCTAAGTTTCTAAAATTATTTTATCTTTTAAAATAATAATACTTTTATTAGTTGATATATTAGAAATCTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAattatt                                                                                                                <  2:2486398/128‑1 (MQ=255)

              tAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTAttt                                                                                                               <  1:3741494/128‑1 (MQ=255)

               aGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTAtttt                                                                                                              >  1:2946178/1‑128 (MQ=255)

                 tctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAACCTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTc                                                                                                            >  2:4944684/1‑128 (MQ=255)

                 tctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTc                                                                                                            >  1:5627484/1‑128 (MQ=255)

                  ctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCa                                                                                                           >  1:5798012/1‑128 (MQ=255)

                    cATAAATCTAAGTTTCTAAAATTATTTTATCATTTAATAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCaaa                                                                                                         <  2:5103911/128‑1 (MQ=255)

                     aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGaa                                                                                                                     >  2:3785001/1‑115 (MQ=255)

                     aTAAATCTAAGTTTATAAAATTATTATATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                        <  2:8142605/128‑1 (MQ=255)

                        aaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGt                                                                                                     <  1:9137803/128‑1 (MQ=255)

                        aaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAACAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGt                                                                                                     <  1:1797612/128‑1 (MQ=255)

                           cTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaa                                                                                                  <  1:3113121/128‑1 (MQ=255)

                            tAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaaa                                                                                                 <  2:3977615/128‑1 (MQ=255)

                            tAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaaa                                                                                                 <  1:1615442/128‑1 (MQ=255)

                             aattttCTAAAATTATTTTATCATTTAAATAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAat                                                                                                <  2:6867691/125‑1 (MQ=255)

                               gTTTCTAAAATTATTTTATCATTTAAAAAAATAGTACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAatta                                                                                              >  2:9538436/1‑128 (MQ=255)

                               gTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAatta                                                                                              >  1:6094131/1‑128 (MQ=255)

                                tttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattat                                                                                             <  2:1535807/128‑1 (MQ=255)

                                 ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattatt                                                                                            <  1:2678370/128‑1 (MQ=255)

                                  tCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAttt                                                                                           >  2:4429552/1‑128 (MQ=255)

                                  tCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAttt                                                                                           <  1:751127/128‑1 (MQ=255)

                                  tCTAAAATTATTATATCATTTAAAAAAATAATACTATTATTAGTTGATATATTAGATAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAAATGATTTATTTTTCAAATTTTTAAATTAttt                                                                                           <  1:9600794/128‑1 (MQ=255)

                                   cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                          >  2:2886893/1‑128 (MQ=255)

                                   cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                          <  1:2318996/128‑1 (MQ=255)

                                   cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                          >  2:622917/1‑128 (MQ=255)

                                   cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                          >  1:9004604/1‑128 (MQ=255)

                                   cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                          <  2:3333430/128‑1 (MQ=255)

                                    tataaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAAGTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                         <  2:8298200/125‑1 (MQ=255)

                                    tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                         <  2:7963972/128‑1 (MQ=255)

                                    tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                         <  1:6610532/128‑1 (MQ=255)

                                    tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTAATAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                         <  2:6382126/128‑1 (MQ=255)

                                       aaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaaa                                                                                      <  1:8698200/128‑1 (MQ=255)

                                            ttttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGGACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTGAAATTGTTAAATTATTTTCAAATCAtt                                                                                 <  1:42212/128‑1 (MQ=255)

                                             tttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTa                                                                                <  2:6637383/128‑1 (MQ=255)

                                              ttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                               <  1:4656623/128‑1 (MQ=255)

                                              ttATCATTTAAAAAAATAATACTTATATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑ATTTTAATTTTAATAACTTAATTATTTTACAAATTATTAAATAATTTACAAATCATTaa                                                                               >  1:6292880/1‑127 (MQ=255)

                                              taaTCATAAAAAAAAATACAAATAATATTAGTTTATATATTAGAAAAATACTAGAACTTTTTTAAAAA‑A‑TTTTTAATTTAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                               <  1:5959833/126‑1 (MQ=255)

                                               tATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATc                                                                              <  2:9040454/128‑1 (MQ=255)

                                                aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                             >  1:2140209/1‑128 (MQ=255)

                                                  cATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAt                                                                           >  2:9247111/1‑128 (MQ=255)

                                                  cATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTAAAATCATTATCTAt                                                                           >  1:1980220/1‑128 (MQ=255)

                                                   aTTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAtt                                                                          >  2:704509/1‑128 (MQ=255)

                                                    tttAAAAAAATAATACTTTAATTAGTTGATATATTAGAAAACTACTAGCACATTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATAATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTa                                                                         >  1:389283/1‑128 (MQ=255)

                                                       aaaaaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATc                                                                      >  1:8184731/1‑128 (MQ=255)

                                                         aaaaaTAATAATTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCaa                                                                    <  1:5319087/128‑1 (MQ=255)

                                                           aaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtt                                                                  <  2:1965051/128‑1 (MQ=255)

                                                            aataatACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAttt                                                                 <  1:6779834/128‑1 (MQ=255)

                                                             ataataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtttt                                                                <  2:461820/128‑1 (MQ=255)

                                                             ataataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtttt                                                                >  2:9386231/1‑128 (MQ=255)

                                                               aataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATAATCTATTAATCAATTTTAt                                                              >  1:2475234/1‑128 (MQ=255)

                                                               aataCTTTTATTAGATGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAt                                                              <  1:8538612/128‑1 (MQ=255)

                                                                ataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATg                                                             >  1:1004074/1‑128 (MQ=255)

                                                                 taCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAtct                                                            >  2:7494044/1‑126 (MQ=255)

                                                                 taCTTTTATTAGTTGATATATTAGAAAAATACTAGCAATTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGc                                                            <  1:784659/128‑1 (MQ=255)

                                                                  aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAttt                                                                 >  2:1699747/1‑122 (MQ=255)

                                                                  aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCt                                                           >  1:6426765/1‑128 (MQ=255)

                                                                  aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCt                                                           >  1:1331463/1‑128 (MQ=255)

                                                                    ttttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTct                                                         >  2:478968/1‑127 (MQ=255)

                                                                     tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑t                                                      >  1:4976582/1‑128 (MQ=255)

                                                                     tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGATctt                                                        >  1:4335383/1‑126 (MQ=255)

                                                                       tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑ttt                                                    >  2:5535301/1‑128 (MQ=255)

                                                                        tttaTTTGATATATTATAAAACTAAAATAAATTTATTAAAAA‑A‑TTTTTAATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTATTTTAAAATCATTATCTATTAAAAAATTTTATGCTCG‑‑tttt                                                   <  2:8659671/127‑1 (MQ=255)

                                                                        attaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑tttt                                                   >  2:2748231/1‑128 (MQ=255)

                                                                               gATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑ttttttttttt                                            >  1:5172099/1‑128 (MQ=255)

                                                                                  atatTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                               <  1:5446347/92‑1 (MQ=255)

                                                                                  atatTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑tttttttttttttt                                         >  2:3148391/1‑128 (MQ=255)

                                                                                  atatTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑tttttttttttttt                                         >  1:4482643/1‑128 (MQ=255)

                                                                                  atatTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTATATGCTCT‑‑tttttttttttttt                                         >  1:3598749/1‑128 (MQ=255)

                                                                                   tatTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAACTATTAATCAATTTTATGCTCG‑‑ttttttttttttttt                                        <  1:928274/128‑1 (MQ=255)

                                                                                          aaaCTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTTTTAAATTATTTTCAAAACATTAACTATTAATCAATTTTATGCTCG‑‑gttttttttttttttacaaaaa                                 <  1:1151233/128‑8 (MQ=255)

                                                                                          aaaCTACTAGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACaaa                                 >  2:84672/1‑128 (MQ=255)

                                                                                            tattattttaattttttAAAAATA‑TTTTTAATTTTATTAATTT‑ATTAATTTTAAAAATTTTAAATTATTTTTAAATAATTATTTTTTAATTTTTTTTTTTTTCT‑‑TTTTTTTTTTTTTTTTTACaaaaa                               <  2:3586253/117‑1 (MQ=255)

                                                                                            aaaattagaaattttttAAAAA‑A‑TTTTTTATTTTAATAACTTAATTATTTTTAAAATTTTTAAATTATTTTCAATTAATTATATATTAATCAATTTTATGCACG‑‑‑TTTTTTTTTTTTTTTTACAAAAat                              <  1:7354319/117‑1 (MQ=255)

                                                                                               aaaataaattttttAAAAA‑A‑TTTTTAATTTTAATAACTTAATTATTTTTCAAATTTTTAAATTTTTTTAAAATCATTATCTATTAATCAATTTTATGCTCGT‑TTTTTTTTTTTTTTTTTACAAAAata                             <  1:768305/120‑1 (MQ=255)

                                                                                                gtattaattttttAAATA‑A‑TTTTTAATTTTATTAAATGAATTTTTTTTCAAATTTTTAAATTATTTTAAAATAAATAAATATTTATAAATTTTATTATCG‑‑‑ATTTTTTTTTTTTTTTACAAAAATATaa                          <  1:4846146/121‑1 (MQ=255)

                                                                                                ctaGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTTAAAAAAaata                           >  2:2144563/1‑128 (MQ=255)

                                                                                                 tattaattttttAAAAA‑A‑TTTTTAATTTTTAAAAATGAATTTTTTTTAAAATTTTTAAATTTTTTTTAAATAATTTTTTATTTAATAATTTTTTGTTAG‑‑TTTTTTTTTTTTTTTTTACAAAAATATaa                          <  2:8802782/122‑1 (MQ=255)

                                                                                                  aGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAAaataat                         >  1:8859838/1‑128 (MQ=255)

                                                                                                  aGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAat                         >  1:8366447/1‑128 (MQ=255)

                                                                                                  aGCACTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTAG‑‑TTTTTTTTTTTTTTTTTA‑AAAAATATaaat                        >  1:3270619/1‑126 (MQ=255)

                                                                                                     aCTTTTTTAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATAAAattta                      >  1:4041107/1‑128 (MQ=255)

                                                                                                      cTTTTTTAAAAA‑ATTTTTTATTTTAAATAA‑TTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAATTTTATTCTGG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAatttat                     <  2:1101765/128‑1 (MQ=255)

                                                                                                      attttttAAAAA‑A‑TTTTTAATTTTAAAAATTTAATTTTTTTTAAATTTTTTAATTTTTTTTAAAAAAATTAATTTTAAATAAATTTTAT‑CTGGT‑TTTTTTTTTTTTTTTTTACAAAAATATAatttat                     <  1:8033116/127‑1 (MQ=255)

                                                                                                       ttttttAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCGTTTTTTTTTTTTTTTTTTTAAAAAAATATAattta                      >  2:7355292/1‑128 (MQ=255)

                                                                                                       ttttttAAAAA‑A‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAatttatt                    >  1:1459658/1‑128 (MQ=255)

                                                                                                             aaaaa‑a‑TTTTAATTTTAAAAAATTAAATT‑TTTTTAAAAATTTTAAATTTTTTTTAAATAATAATCTAATTATAAATTTTATTGTTG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTaa             <  1:7166425/128‑1 (MQ=255)

                                                                                                              aaaa‑a‑TTTTTAATTTTTATAAATTAATTATTTTTCAAATTGTTAAATTATTTTCAAATAATTATCTATTAAATAATTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTaa             <  2:7639317/128‑1 (MQ=255)

                                                                                                              aaaa‑a‑TTTTTAATTTTAATTAATTAATTTTTTTTAAAATTTTTAAATTATTTTAAAATTATTATTTTTTTAAAAATTTTTTTTTTG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTaa             <  2:5959848/128‑1 (MQ=255)

||

TTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAA‑A‑TTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTA  >  CP016816/420039‑420287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`