Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9520CA34.2% 1336.3 / 163.9 834intergenic (+336/+122)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (232/293);  new base A (208/65);  total (452/382)
Fisher's exact test for biased strand distribution p-value = 2.53e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 859 total aligned reads displayed.

GCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203826‑204079
                                                                                                                                      |                                                                                                                                
   aaagttaaatgCTTTTTATTAAACAAATCATCATTACAAAGCTTTAAAATTG‑TATTTTTTATGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCaaa                                                                                                                               <  2:492122/118‑1 (MQ=255)
       acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑GTAAAATTTTTA‑AAAACAAAACAAAATAAAAAAAAt                                                                                                                          >  2:3596177/4‑128 (MQ=255)
        tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAATA‑TTAATATTTGGATCACACAAAACTATATAAAAAAAAt                                                                                                                          >  2:797823/1‑128 (MQ=255)
         cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGTTTTTTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑TTAATTTTTTGAGAAACAAAAAATATTTAaaaaaa                                                                                                                            >  2:3388995/1‑128 (MQ=255)
          tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAAAAAAATTTAATATTTTTAAAAACCAAAA‑GAAATAAAAAAAATTaa                                                                                                                       >  2:3223767/1‑128 (MQ=255)
          tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑TTAAGATTTGTATAAACAAAAAATA‑ATaaaaaaaaaataa                                                                                                                      >  1:1304878/1‑123 (MQ=255)
           aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGTT‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑TTAATTTTTGGATCAACCAAAAATATAAAAAAAAAATTa                                                                                                                        >  1:426138/1‑128 (MQ=255)
           aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAAAAAAA‑TTAATATTTTGAAAAACCAAAAAAAAAAAAAAAAAATaaa                                                                                                                       >  2:3801708/1‑128 (MQ=255)
           aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑TTAAGATTTGGATCAACCAAAAATATTTAAAAAAAATTaa                                                                                                                       >  1:1998322/1‑128 (MQ=255)
           aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTTTT‑TTTTT‑‑TAAAAATAAAA‑GTAAGATTTGGATCAACACAAACTATATCAAAAAAAGTaa‑aaa                                                                                                                   >  2:3552789/1‑128 (MQ=255)
            ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGTT‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑TTAAAATTTGGATCAACCAAAACTTTATAAAAAAAATaaa                                                                                                                       >  2:3312689/1‑128 (MQ=255)
               tttttATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTTTT‑TTTTTTTAAAAAATAAAA‑TTAAAATTTGTAACAACCAAAAATAAATCAAAAAAATTaa‑aaaaa                                                                                                                 >  1:2293363/1‑128 (MQ=255)
                    attattattATAAAAATTAAAATTTTTTTAAATTG‑TATTTTTTATTCTTTT‑‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAAtag                                                                                                             <  1:3758994/128‑1 (MQ=255)
                          tttATAAACATTAAAATTCTTTAAAATTT‑TTTTTTTTTGGT‑TTG‑‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAAtagtttagtt                                                                                                      <  2:3173915/127‑1 (MQ=255)
                          cTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑TTAATATTTTGAAAAACCAAAAAAATATAAAAAAAATTAA‑AAAAAAaattttatt                                                                                                       >  1:3128498/1‑126 (MQ=255)
                          cTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑TTAAAATTTGGATAAAACAAAAATATTTAAAAAAAATTAA‑AAAAAAtattttttt                                                                                                       >  1:290229/1‑125 (MQ=255)
                            taatcaCATTACAACGCTTTTAAAGGGTTTTTTTTTTGGT‑TTGTT‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAAtagtttagt                                                                                                       <  2:3259018/123‑1 (MQ=255)
                            tATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑GTAATATTTGGATAAAACAAAAATATATAAAAAAAATTAA‑AAAAAAtattttatttt                                                                                                     >  1:3249197/1‑127 (MQ=255)
                             aTCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGTT‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑ATAAGATTTTGATAAACCAAAAATATAAAAAAAAAATTaa‑aaaaataattttattta                                                                                                     >  1:2689939/1‑116 (MQ=255)
                             aTCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTTTTATTTTTTGTAAAAAAAAAA‑TTAAATTTTGTAAAAACCAAAAAAAATAAAAAAAAATTTA‑AAAAAAaagttattatga                                                                                                    >  2:3677479/1‑121 (MQ=255)
                              tCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAAAAAAA‑TTAAAATTTGTATAAAACAAAAAAATAAAAAAAAAATAAA‑AAAAAAtatttttttttat                                                                                                   >  2:3639475/1‑121 (MQ=255)
                                aaCATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑TTAATATTTTGATAAACCAAAACTATATAAAAAAAATTAA‑AAAAAATATTTtagtttagtt                                                                                                 >  1:139159/1‑128 (MQ=255)
                                   aTTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGTT‑‑TTTTTTTTTT‑TTTTTTTTAAAAAAAAAA‑TTAATATTTGGATAAACCAAAAATATTAAAAAAAAATTAA‑AAAAAAAattttattttatttta                                                                                               >  1:121679/1‑127 (MQ=255)
                                     tACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTTTT‑TTTTTT‑TAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATATTTTATTTAAGTTTAAAAta                                                                                          >  2:2240443/1‑127 (MQ=255)
                                      acaactctagaaaaGTG‑TATTTTTTATGA‑GTGTT‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCaaa                                                                                            <  2:3147155/117‑1 (MQ=255)
                                       cAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑TTAATATTTGGATCAAAAAAAAATAATTAAAATAATTTAA‑AAAAATTTGTTTTATTGTGTTTAAAAtg                                                                                          >  1:2544902/1‑127 (MQ=255)
                                         aCGCTTTCAAAGTG‑TATTTTTTAGGC‑TTGTT‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑TTAAAATTTGTATAAACAAAAAATATTTAAAAAAAATTAA‑AAAAAATATTTTATTTGATTTTAAAATCt                                                                                         >  1:1457899/1‑128 (MQ=255)
                                            cTTTCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑GTAAGATTTGTAAAAACAAAAAATATTAAAAAAAAATAAA‑AAAAAATAATTTATTTAAGTTTCAAAACTGAat                                                                                     >  1:8577/1‑128 (MQ=255)
                                              ttCAAAGTG‑TATTTTTTAGGC‑TTGTTTTTTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑GTAAGATTTGGATAAACAAAAAATAAATAAAAAAAATTAA‑AAAAAAAAATTTATTTGAGTTTCAAAtaagca                                                                                      >  1:3484449/1‑123 (MQ=255)
                                              ttCAAAGTG‑TATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑TTAAAATTTGGTTAAACCAAAAATATATAAAAAAAATTAA‑AAAAAATATTTTATTTTATTTTCAAATCTgaaaat                                                                                   >  1:3176512/1‑123 (MQ=255)
                                                cAAAGTG‑TATTTTTTTTGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                                                                                 <  1:2995051/128‑1 (MQ=255)
                                                     tg‑tATTTTTTAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAAAAAAA‑GTAATTTTTTGTTAAACCAAAAATATATAAAAAAAATTAA‑AAAAAAATTTTTTTTTGATTTTAAAATATGAAAAAATATTAc                                                                            >  1:1105586/1‑128 (MQ=255)
                                                          ttttttAGGC‑TTGTT‑‑TTTTTTTTTT‑TTTTTTTTAAAAAAAAAA‑TTAATATTTGGTTCAACAAAAAATTTATAAAAAAAATTAA‑AAAAAATAGTTTATTTTAGTTTAAAAACTGAAAATAAATTAaaaa                                                                         >  1:2747387/1‑128 (MQ=255)
                                                               tAGGC‑TTGT‑‑‑TTTTTTTTTT‑TTTTTTTTAAAAATAAAA‑GTAAGTTTTGGATAAACCAAAACTTATTAAAAAAAATTAA‑AAAAAATATTTTTTTTTATTATCAAATATTCATAAATTGTAAAAAAGaaat                                                                   >  1:2442484/1‑126 (MQ=255)
                                                                tttttgtttttttttttttttt‑ttttttGTAAAAATAAAA‑GTAAGATTTGGAGCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGa                                                                      <  2:3355081/116‑1 (MQ=255)
                                                                       g‑‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTTTTTAAAAAAAATTAA‑AAAAAATATTTTATTTGAGTTTCAAATCTGCAAATAAATTAAAAAAGAATTTAttaaag                                                           >  1:1264083/1‑123 (MQ=255)
                                                                         gtttttttttttt‑ttttttGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAAATATATAAAAAAAATTAA‑AAAAAATAGTTTATTTTAGTTTAAAATATGCATATATTGTAAAAATGTATTtattat                                                             >  1:580703/4‑128 (MQ=255)
                                                                          gttttttttttt‑ttttttttAAAAATAAAA‑TTAAAATTTGTAAAAACAAAAAAAAAAAAAAAAAAATTAA‑AAAAAATAATTTATTTATGTTTAAAATATTAATATATATTAAAAAGTAAataataata                                                            >  2:1378136/3‑128 (MQ=255)
                                                                          gttttttttttt‑ttttttttAAAAATAAAA‑GTAATATTTTGATAAACAAAAACTTTATAAAAAAAATTAA‑AAAAAATATTTTATTTTAGTTTAAAAATTGAATATAAATTAAAAAGAAAATTataata                                                            >  1:1798231/3‑128 (MQ=255)
                                                                           ttttttttttt‑ttttttGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                                                           <  2:460365/127‑1 (MQ=255)
                                                                            tttttttttt‑ttttttGTAAAAAAAAAA‑TTAAGATTTTGATAAACCAAAACTATATAAAAAAAATTAA‑AAAAAATATTTTTTTTTAGTTTCAAATATGCATATATATTAAAAAATAATATATGaaata                                                          >  1:2939878/1‑124 (MQ=255)
                                                                                 ttttt‑tttttttTAAAAATAAAA‑TTAATATTTGGATAAACCAAAAATTTTTAAAAAAAATTAA‑AAAAAATATTTTTTTTTATTTTAAAATATGAATATATAGTAAAAATGAATTTATTATATaaaaaa                                                     >  1:391247/1‑128 (MQ=255)
                                                                                  tttt‑ttttttGTAATAATAAAA‑GTTAGATTTGGATTTATTAATACTATATTAAAAAAATTAA‑AAAATATAGTTTAGTT‑AGTTTCATATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt                                                   <  2:2841069/128‑1 (MQ=255)
                                                                                  tttt‑ttttttGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                                    <  1:3106289/128‑1 (MQ=255)
                                                                                  tttt‑ttttttGTAAAAATAAAA‑GTAAGATTTGGATAAACCAAAACTATATCATAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                                    <  2:1019174/128‑1 (MQ=255)
                                                                                   ttt‑ttttttGTAAAAATAATA‑GTAATATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt                                                   <  2:251932/128‑1 (MQ=255)
                                                                                    tt‑ttttttGTAAAAATAAAA‑GTAAGATTTTGATCAACAAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg                                                  <  2:1961576/128‑1 (MQ=255)
                                                                                    tt‑ttttttGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg                                                  <  2:2960249/128‑1 (MQ=255)
                                                                                       ttttttttAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATTTCAAAAAAATTAA‑AAAAAATATTTTTTTTTAGTTTAAAATATGAATAAATATAACAAAGGAATTTATTATAGAAAAAAATgta                                                >  1:751469/1‑126 (MQ=255)
                                                                                        ttttttTAAAAATAAAA‑TTAAGATTTGGATCAACCAAAAATATATAAAAAAAATTAA‑AAAAAATATTTTTTTTTATTTTAAATTATGCATATATAGTAAAAAGAAATTATTTTTATAAAAAAAtttat                                               >  1:2195371/1‑124 (MQ=255)
                                                                                         ttttttAAAAATAAAA‑GTAAGATTTGGATAAACAAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                                              <  2:1422510/128‑1 (MQ=255)
                                                                                         ttttGTAAAAATAAAA‑GTAAGATTTGGATGAAAGAATTCTATATCTAAAATATTAA‑AAAATATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                                              <  2:2460977/128‑1 (MQ=255)
                                                                                         ttttGTAAAAATAAAA‑GTAAGATTTGGATAAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTATTTTAGTTTAAAATATGCATATATATTACAAAGGAATTTATTATAGAAAAAAAttgttt                                              >  2:3448540/1‑123 (MQ=255)
                                                                                          tttGTAAAATTTATT‑TTATGATTTGTATAAATTAAATCTATATAAAAATAATTAATAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                                              <  2:688682/128‑1 (MQ=255)
                                                                                              tAAAAATAAAA‑GTAAGATTTGGATCAACCAATACTATATCATAAAAATTAA‑AAATATTTGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaa                                         <  1:1937570/128‑5 (MQ=255)
                                                                                              tAAAAATAAAA‑GTAAGATTTGGATAAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaa                                         <  2:2910153/128‑5 (MQ=255)
                                                                                               aaaaaTAAAA‑GTAAGATTTTGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGa                                        <  2:1763558/128‑1 (MQ=255)
                                                                                                aaaaaaaaA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGa                                        >  1:815291/1‑127 (MQ=255)
                                                                                                aaaaTAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                       <  2:3087488/128‑1 (MQ=255)
                                                                                                    tAAAT‑GTAAGTTTTGTATAAATCAAATGTATTTCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  1:3826484/128‑1 (MQ=255)
                                                                                                    tAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   >  2:1257425/1‑128 (MQ=255)
                                                                                                     aaaa‑GTAAGATTTGGATCAACCACAACTACATCTAAAAAATTAA‑AAATAATAGATTAATTTAGTTTCAAAACTGCATATATAGTACATATGAATATATGATACAAAAAAATCTATTAATTGAAAATcc                                  >  2:3515709/1‑128 (MQ=255)
                                                                                                     aaaa‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  >  1:154210/1‑128 (MQ=255)
                                                                                                      ata‑gttagttTTGGATCATATAAAAATATATAAAAAATATTAA‑AAAATATAGTTTATTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                                 <  1:2052217/126‑1 (MQ=255)
                                                                                                      aaa‑GTATGATTTGGATCAAACAAAACTATATAAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                                 <  1:3359750/128‑1 (MQ=255)
                                                                                                      aaa‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                                 >  1:1598132/1‑128 (MQ=255)
                                                                                                       ta‑GTAAGATTTGGATTAAATAAATCTATATCATAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                <  2:2326859/127‑1 (MQ=255)
                                                                                                       aa‑GTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                <  1:3056228/128‑1 (MQ=255)
                                                                                                          gTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCGAttt                              >  2:928081/1‑128 (MQ=255)
                                                                                                           tAAGATTTTGATCAAACAAAACTATATTAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                             <  2:1893764/128‑1 (MQ=255)
                                                                                                           tAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGATTTTATGATAGAAAAAAATGGATTATTTGATAATCCAtttt                             >  2:121834/1‑128 (MQ=255)
                                                                                                           tAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                             >  1:3424253/1‑128 (MQ=255)
                                                                                                           tAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                             >  2:830220/1‑128 (MQ=255)
                                                                                                            aaGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGAACAAAGGAATTTATGATACAAAAAAATTGATTAGTTGATaaacaaataat                            >  2:2712865/1‑119 (MQ=255)
                                                                                                             aGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                                              >  1:3683686/1‑109 (MQ=255)
                                                                                                             aGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           >  1:682953/1‑128 (MQ=255)
                                                                                                             aGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           >  2:15562/1‑128 (MQ=255)
                                                                                                             aGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATAAATAGTACAAAGGAATTTATGATTGAAAAAAATATAATAGTTGATAATCCAtataat                           >  2:602436/1‑123 (MQ=255)
                                                                                                              gATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          <  1:484457/128‑1 (MQ=255)
                                                                                                              gATTTGGATAAACAAAAAATATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          <  2:2132220/128‑1 (MQ=255)
                                                                                                               aTTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa                         >  2:891755/1‑128 (MQ=255)
                                                                                                                tttGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                        >  2:1672207/1‑128 (MQ=255)
                                                                                                                tttGGATCAACAAATACTATATAAAAAAAATTAT‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGATAACACAGGCTTAGTCGATAATCCATTTTTTAAt                        <  1:3538127/128‑1 (MQ=255)
                                                                                                                 ttGGAACAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt                       <  2:1297790/128‑1 (MQ=255)
                                                                                                                  tGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                      >  2:3032319/1‑128 (MQ=255)
                                                                                                                  tGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                      >  2:3726055/1‑128 (MQ=255)
                                                                                                                  tGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                      >  1:1695289/1‑128 (MQ=255)
                                                                                                                   ggATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtttt                     <  2:3424253/128‑1 (MQ=255)
                                                                                                                     ataaatatataatataTCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGt                   <  1:1004308/116‑1 (MQ=255)
                                                                                                                      tCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAATAATGATAGAAAAAAATGGATAAGTTGATAATCGATTTTTTAATTTTGtt                  >  1:1888852/1‑128 (MQ=255)
                                                                                                                         aCCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat               >  1:2356728/1‑128 (MQ=255)
                                                                                                                         aCCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat               >  1:1332560/1‑128 (MQ=255)
                                                                                                                          caaatagtataTCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATATAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt              <  2:2015843/121‑1 (MQ=255)
                                                                                                                            aaaaCTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            >  1:3314858/1‑128 (MQ=255)
                                                                                                                              aaCTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAat          >  1:933710/1‑128 (MQ=255)
                                                                                                                               aCTATATAAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAatt         <  1:3601112/128‑1 (MQ=255)
                                                                                                                                cTATATAAAAAAAATTAA‑AATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAatta        <  2:391247/128‑1 (MQ=255)
                                                                                                                                 tataTCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattat       <  2:1105586/128‑1 (MQ=255)
                                                                                                                                  atatCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTAGTAAattatt      >  2:2607401/1‑128 (MQ=255)
                                                                                                                                  atatCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTGGATAATCCATTTTTTAATTTTGTTTATTAAattatt      >  1:2816570/1‑128 (MQ=255)
                                                                                                                                      |                                                                                                                                
GCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGGC‑TTG‑‑‑‑TTTTTTTTTT‑TTTTTTGTAAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAA‑AAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203826‑204079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑