Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2710GT32.9% 3316.0 / 315.2 2162intergenic (‑554/+289)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base G (438/967);  new base T (631/57);  total (1138/1024)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2191 total aligned reads displayed.

TTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAA  >  CP016816/420143‑420399
                                                                                                                                          |                                                                                                                                
   ttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTAAAATTGTTAAATTTTTTTAAAATAATTATTTATTAATCAA‑‑TT‑‑‑TTATGCTGT‑‑T‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGa                                                                                                                                 <  1:5846149/128‑1 (MQ=255)
   ttAAAAAAATTTTAATTTTTATAACTTAATTATTTTTAATATTTTTAAATTATTTTATAATCATTATAAATTAAAAAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGAtt                                                                                                                               <  2:3751828/128‑1 (MQ=255)
      aaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATttaattaa                                                                                                                             >  2:6117322/1‑128 (MQ=255)
         aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACg                                                                                                                          >  2:5394356/1‑128 (MQ=255)
          atttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAAAGt                                                                                                                         >  2:6017329/13‑128 (MQ=255)
           tttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑‑‑TTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTAATTAAACTtata                                                                                                                      >  2:3261245/12‑128 (MQ=255)
             tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑GTTTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAAAGtat                                                                                                                       >  2:1329817/10‑128 (MQ=255)
              ttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑GTTTTTTTTTTTTTTTTTT‑AAAAAAAAATAATTTATTTGATTAAACGtatt                                                                                                                      >  1:6134920/9‑127 (MQ=255)
              ttaattttaatAAATGATTTATTTTTAAAATTGTTAAATTATTTTAAAATAATTATCTATTAATAAA‑‑TT‑‑‑TTATTCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTatat                                                                                                                     <  2:6353683/120‑1 (MQ=255)
                   ttttatatattaaTTATTTTTAAAATTTTTTATTTTTTTTTAAATTTTTTTTTTTTAATAAATTTT‑‑‑TTTTTTT‑T‑‑T‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACATATATTTa                                                                                                                  <  1:797410/117‑1 (MQ=255)
                     taataatTTAATTATTTTTAAAATTTTTAAATTTTTTTAAAATAATTATATATTAATAAA‑‑TTTTATTATATT‑T‑‑T‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACATAAAtatac                                                                                                                 <  2:1058010/127‑2 (MQ=255)
                     taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTA‑AAAAAAATATAATTTATTTTATAAAAAATATATTTAtttt                                                                                                              >  1:2245663/2‑128 (MQ=255)
                      taataatttatttttTTTAAATTTTTTTAATTTTTTTTAATTAATTATATATTAATAAA‑‑TT‑‑‑TTATTTT‑T‑‑G‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTta                                                                                                            <  2:1513704/119‑1 (MQ=255)
                      aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑CTTT‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAATTATATTTAttt                                                                                                               >  2:2400086/1‑126 (MQ=255)
                      aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTTAAAAAAAATATAATTTTTTTAATTAAACTTATttttttttt                                                                                                              >  2:810827/1‑123 (MQ=255)
                           atttattattTTTATAATTTTTAAATTTTTTTAAATTATTTTTTTTTTTATAAA‑‑TT‑‑‑TTTTTTT‑T‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                                        <  1:4946231/124‑1 (MQ=255)
                           attaaTTATTTTTAAAATTTTTAAATTTTTTTAAAATAATTATATATTAATAAA‑‑TT‑‑‑TTATTTT‑T‑‑T‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                                        <  2:191281/125‑1 (MQ=255)
                            tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTA‑AAAAAAATAAAATTATTTTTATTAAAGTAATATTTTTTTTTATTaaa                                                                                                       >  1:889108/1‑128 (MQ=255)
                            tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTA‑AAAAAAATAAAATTAATTTTATTAAAATAAAATTTATTTTTaaaaaa                                                                                                       >  2:2072670/1‑128 (MQ=255)
                                 tattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑GTTTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATATTTATGTTTAATAAAAAtt                                                                                                   >  1:1839814/1‑127 (MQ=255)
                                   ttttttAATTTTTTATATTATTTTTAAATAATTATTTTTTAATAAA‑‑TT‑‑‑TTTT‑‑T‑A‑‑T‑ATTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaaa                                                                                              <  2:3598161/128‑1 (MQ=255)
                                   tttttCAAATTGTTAAATTATTTTCAAATAATTATATATTAATCAA‑‑TT‑‑‑TTTTGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaa                                                                                                <  2:5702921/128‑1 (MQ=255)
                                   tttttAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaa                                                                                               <  1:6467525/128‑1 (MQ=255)
                                    ttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑GTTTTTTTTTTTTTTTTTT‑AAAAAAAATTAATTTTTTTAATTAAAGTTATTTTTTTTTTAAATAAAAAttaaa                                                                                                >  2:5060896/1‑124 (MQ=255)
                                    ttttAAAATTTTTAAATTTTTTTAAAATTATTTTATTTTAATTAA‑‑TT‑‑‑TTTTTTT‑T‑‑T‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAAT‑AAAATGGaaaa                                                                                              <  1:1001279/128‑1 (MQ=255)
                                       taaaaTTTTTATATTATTTTTAAATTATTATATATTAATATA‑‑TT‑‑‑TTTTTTT‑CT‑T‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaag                                                                                             <  1:743210/126‑1 (MQ=255)
                                         aaaTTGTTAAATTATTTTTAAATTATTATATATTAATCAA‑‑TT‑‑‑TTATGTT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaagaaa                                                                                          <  1:4159955/128‑1 (MQ=255)
                                          aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑‑TTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATataaaataaatt                                                                                        >  2:3357016/1‑126 (MQ=255)
                                            ttttttaaTTATTTTAAAATAATTATATATTAATAAA‑‑TT‑‑‑TTATTCT‑A‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTg                                                                                       <  2:3801629/122‑1 (MQ=255)
                                               ttAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATAATATTTATTTGATTAAACGAATTTTTATTTTAAATAAAAATTGaaaaaaaatttaag                                                                                    >  1:6691138/1‑122 (MQ=255)
                                                tAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGAT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑AAAAAAATAAAATTAATTTTATTAAACATAAATTTATTTTTAATAAAAATTGAaaataaattaatta                                                                                   >  2:1794693/1‑121 (MQ=255)
                                                 tttttattTTTAAATTATTTTTTTTTAATTTA‑‑TT‑‑‑TTTTTTT‑T‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTg                                                                                  <  1:1982187/125‑1 (MQ=255)
                                                 aaaTTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑AAAAAAAAAAAATTTATTTTATTAAACTTAAATTTATTTTTAATAAAAATTGAAAAAAAATTTAAtta                                                                                  >  1:2560673/1‑127 (MQ=255)
                                                    ttattTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAATTTTATTTTTTTTTAATAAAAATTTAAAAAAAATTTAAttttaa                                                                               >  2:644592/1‑124 (MQ=255)
                                                    ttattTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑‑TTTTTTTTTTTTTTTA‑AAAAAAATATAATTTATATAATTAAAATTATTTTTATTTTTTAAAAAAATTAAAAATAAAATAAAttttaat                                                                              >  2:4207711/1‑123 (MQ=255)
                                                       ttttCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑GTTTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATTTTTATTTTTAATAAAATTTTAAAATAAAGTTAAttttaaga                                                                             >  2:1657879/1‑122 (MQ=255)
                                                       ttttCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAATAAATTTAATTGTCataa                                                                            >  2:2664317/1‑128 (MQ=255)
                                                         ttCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTTTTAAAATTATATTTATTTTTAATAAAAATTTAAAATAAATTTAATTTTAataata                                                                          >  2:2968692/1‑128 (MQ=255)
                                                           cAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATATTTTTGTTTAATAAAAATGTAAAATAAATTTAATTTTaataataat                                                                        >  2:6896842/1‑128 (MQ=255)
                                                                cATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑GTTTTTTTTTTTTTTTTTT‑ACAATAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGTAAAATAAAGTGAATTGTCATAAtaatttaa                                                                    >  2:6268603/1‑128 (MQ=255)
                                                                cATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑‑‑‑TTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGTAAAAAAAATTGAATTTTCATAATAATttaattaa                                                                >  2:4072046/1‑128 (MQ=255)
                                                                 attaatttttaattaa‑‑TT‑‑‑TTTTGCT‑C‑‑C‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAAtaatttaatt                                                                  <  1:480621/120‑1 (MQ=255)
                                                                  ttATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTTAAAATAAATTAAATTTTAATATAAATttaatta                                                                 >  2:4626718/1‑128 (MQ=255)
                                                                  ttATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑‑TTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAAAGTATATTTATTTTTAATAAAAATTTAAAATAATATTAATTTTCATAATAATttaattaa                                                                >  2:434498/1‑128 (MQ=255)
                                                                    aTCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑AAAAAAAATTAATTTATTT‑AATAAAAATTTATTTTTTTTTTAAAAAAATTTAAAAAAAAATTAATTTTTAAAATAAtttaatttaaa                                                              >  2:5600388/1‑127 (MQ=255)
                                                                    aTCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑‑TTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTTTATTTATTTTTAAAAAAAAAGTAAAAAAAATTTTATTTTAATAATAATTTAATTAAat                                                              >  1:2112872/1‑128 (MQ=255)
                                                                     tatatttattAA‑‑TT‑‑‑TTATTAT‑T‑‑T‑TTTTTTTTTTTTTTTTT‑AGATAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAat                                                              <  2:7020552/126‑1 (MQ=255)
                                                                      ttATTAATAAA‑‑TT‑‑‑TTTTTGT‑T‑‑T‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAata                                                             <  1:6801381/127‑1 (MQ=255)
                                                                       tATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑AAAAAAAT‑TAATTTTTTTTTATAAAAGTATTTTTTTTTTTAATTAAAAAGTAAAAAAAATGTTATTTTAATAAAAAATTTATTAAattaa                                                           >  1:3971667/1‑125 (MQ=255)
                                                                       tATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTA‑AAAAAAATATAATTTATTTTATAAAAATTATATTTATTTTTAATAAAAATTTAAAAAAAAGTTATTTGTAATAATAATTTAATTAAatat                                                            >  2:5502625/1‑128 (MQ=255)
                                                                        aTTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑AAAAAAAAAAAATTTTTTTTATTTAAATTTTTTTTTTTTTAAAAAAAAATGGAAAAGAAATGTAATTTAAAAAATAATTAAaataaataaa                                                           >  1:5640097/1‑126 (MQ=255)
                                                                             tCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATTTAAAAGAAATTGAATTTTAATAATAATTTAATTAAATATATaaaa                                                      >  2:6198765/1‑126 (MQ=255)
                                                                                a‑‑TT‑‑‑TTATGCT‑CT‑T‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAAt                                                    <  1:3735406/128‑1 (MQ=255)
                                                                                a‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑AAAAAAAAATAATTTATTTTATTAAAATTATATTTATTTTTAATAAAAATTAAAAAAAAATTTAATTTAAAAAATAATTTAATTAAATATATAAAAAtt                                                   >  1:3070383/1‑127 (MQ=255)
                                                                                    t‑‑‑ttATGAT‑C‑‑T‑TTTTTTTTTTTTTTTTA‑AAAAAAATATAATTTATTTTATTAAAGATATATTTATATTTAATAAAAAAGTAAAAAAAAATTAAATTAAATAAAAATTTAATTAAAAATAAAAAAATGTa                                                 >  1:656546/1‑128 (MQ=255)
                                                                                           tgctcgttctttttttttttttttttt‑AAAAAAATAAAATTTATTTTATTAAAATTATATTTTTGTTTAATAAAAATTAAAAAAAAAATTAATTGAAATAAAAATTTAATAAAATATATAAAAATGTa                                                 >  1:5941880/11‑128 (MQ=255)
                                                                                           tGCT‑C‑‑G‑‑TTTTTTTTTTTTTTTT‑AAAAAAAAATAATTTATTTTATTAAAACTAAATTTATTTTTTAAAAAAATTTAAAAAAAAATTAAATTTAATAAAAATTTTATTAAATATAAAAAAAttttaattt                                            >  1:7070125/1‑120 (MQ=255)
                                                                                            gCT‑C‑‑G‑TTTTTTTTTTTTTTTTA‑AAAAAATTATAATTTATTTTATAAAAATTTTTTTTTTTTTTAATAAAAATGTAAAAAAAAGTTATTTTTAATAATTATTTAATTAAATATAaaaaaacttaataga                                            >  1:4657406/1‑119 (MQ=255)
                                                                                             ttttttttttttttttttttttttt‑AAAAATATATAATTTATTTTATTAAAAGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAg                                               <  1:1169695/120‑1 (MQ=255)
                                                                                               ttttttttgtttttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtt                                             <  1:6050458/119‑1 (MQ=255)
                                                                                                c‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAATCGTTTTTTTATGTTTATTAAAAATTTAAAATAAAGTGAATTGTAATAATAATTTAATTAAATATATAAAAATGTAAGTTTTaa                                         >  2:1173579/1‑128 (MQ=255)
                                                                                                 ttttttttttttttttttttt‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAAAGTAAGtttt                                           <  1:2883053/124‑1 (MQ=255)
                                                                                                  tttttttttttttttttttt‑ATAAATATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATTGATAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAAAAATGTAAGTTTTa                                          <  1:6309660/125‑1 (MQ=255)
                                                                                                  tttttttttttttttttttt‑ACTAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                                          <  2:2246214/125‑1 (MQ=255)
                                                                                                  tttttttttttttttttttt‑AAAAAATTTTATTTTATTTTATTAAAGTTATATTTATTTTTAATAAAAATGTAAAATAATGTTAATTGTATTAATAATTTAATTAAATATATAACAATGTAAGTTTTa                                          <  1:7157538/125‑1 (MQ=255)
                                                                                                  tttttttttttttttttttt‑AAAAAAATATAATTTATTTGATTAAACTTATATTTATGTTTAATAAAAATGGATAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                                          <  2:7174585/125‑1 (MQ=255)
                                                                                                   g‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACTTATATTTATGTTTAATAAAAATGTAAAATAAAGTTAATTGTAATAATAATTTAATTAAATATATAAAAATTTAAGTTTTaaa                                        >  2:3928888/1‑128 (MQ=255)
                                                                                                     ttttttttttttttttt‑ATAAATATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTaaaa                                       <  1:1370219/128‑1 (MQ=255)
                                                                                                        tttttttttttttt‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAATAAAGTTAATTTTAATAATAATTTAATTAAATATAAAACAATTTAAGTTTTAAAactt                                    >  1:5505533/1‑128 (MQ=255)
                                                                                                         ttttttttttttt‑AAAAATATATAATTTATTTTATTAAAATTATATTTATTTTTAATAAAAATTTAAAATAAATTTAATTTTAATAATAATTTAATTAAATATATAAAAATTTAATTTTTAAAaatta                                   <  1:5104071/128‑1 (MQ=255)
                                                                                                           ttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact                                 <  1:2717412/128‑1 (MQ=255)
                                                                                                              tttttttt‑AATTAAATATAATTTTTTTTATTATAAGTATATTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt                              <  1:152686/128‑1 (MQ=255)
                                                                                                              tttttttt‑AAAAATATATATTTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt                              <  2:3149648/128‑1 (MQ=255)
                                                                                                               ttttttt‑ATAAATATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAATATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt                             <  1:3244758/128‑1 (MQ=255)
                                                                                                                tttttt‑ACAAAAATATAATTTTTTTGATTAAACGTTTATTTATGTTTAATAAAAATGGAAAATAAAGTTATTTGTCATAATAATTTAATTAAATATTTAAAAATTTAAGTTTTAAAAATTACtttttt                            >  2:3477121/1‑128 (MQ=255)
                                                                                                                  tttt‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGt                          <  1:2409050/128‑1 (MQ=255)
                                                                                                                  tttt‑AAAAAAATATAATTTATTTGATTAAAAGTATTTTTATTTTTAATAAAAATGGAAAATAAAGTTAATTTTAATATTAATTTAATTTAATATATaaaaattaattttttaaaaattaatttttttt                          >  1:6386850/1‑126 (MQ=255)
                                                                                                                   ttt‑ACAAAAATATAATTTATTTGATTAAACGTTTATTTTTGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATATTTTAATTAAATATATAACAATTTAAGTTTTAAAACTTACTTTTTTGtt                         >  2:5206625/1‑128 (MQ=255)
                                                                                                                   ttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAATAAATTGAATTTTCATAATAATTTAATTAAATATATAACAATTTAATTTTTAAAACTTACTtttttttt                         >  2:883543/1‑128 (MQ=255)
                                                                                                                     t‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt                       <  1:1693623/128‑1 (MQ=255)
                                                                                                                          aaaaTATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttatt                   <  2:734122/128‑1 (MQ=255)
                                                                                                                           aaaTATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattt                  <  1:6949946/128‑1 (MQ=255)
                                                                                                                               ataATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAATAAATTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTg              <  1:434498/128‑1 (MQ=255)
                                                                                                                                taATTTTTTTGATTAAATTTATATTTATGTTTAATAAAAATGTAAAAGAAAGTTAATTGTAATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGt             <  1:3379018/128‑1 (MQ=255)
                                                                                                                                taATTTATTTGTTTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGt             <  1:3591885/128‑1 (MQ=255)
                                                                                                                                 aaTTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt                       <  2:6680607/117‑1 (MQ=255)
                                                                                                                                 aaTTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTa            >  1:5342151/1‑128 (MQ=255)
                                                                                                                                 aaTTTATTTGATTAAAAGTATATTTATGTTTAATATAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTa            <  1:3822262/128‑1 (MQ=255)
                                                                                                                                  atttatttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTaa           >  2:6785856/1‑128 (MQ=255)
                                                                                                                                   tttatttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAATCTTACTTTTTTGTTTTTATTTACTGTaaa          >  2:4759998/1‑128 (MQ=255)
                                                                                                                                    ttatttGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTaaaa         <  2:6558232/128‑1 (MQ=255)
                                                                                                                                       tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt                               <  2:4925753/103‑1 (MQ=255)
                                                                                                                                       tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAActa      >  1:5731793/1‑126 (MQ=255)
                                                                                                                                       tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa      >  1:4511110/1‑128 (MQ=255)
                                                                                                                                       tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa      >  2:2815437/1‑128 (MQ=255)
                                                                                                                                       tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa      >  2:4498794/1‑128 (MQ=255)
                                                                                                                                       tttGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTATTTTGTTTTTATTTACTGTAAAACaa      >  2:2543589/1‑128 (MQ=255)
                                                                                                                                        ttGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaa     <  2:5801207/128‑1 (MQ=255)
                                                                                                                                         tGATTAAAATTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaa    <  2:5900406/128‑1 (MQ=255)
                                                                                                                                          gATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaaa   <  1:6227341/128‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                
TTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TT‑‑‑TTATGCT‑C‑‑G‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAA  >  CP016816/420143‑420399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑