Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3030CA37.6% 6293.4 / inf 3965intergenic (+267/‑275)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (757/1611);  new base A (1132/293);  total (2050/1915)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 4013 total aligned reads displayed.

CTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165173‑165430
                                                                                                                                       |                                                                                                                                
      ctaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTT‑‑TAA‑TGTAAATATAAATTTTATGTATTTTTTTTTATAAGt                                                                                                                             >  2:9836932/1‑128 (MQ=255)
      attatatTTTTTTATATTTTTTTTTTTATTAAAAATTTTAAAAAAAATAT‑TTTTAAATTTT‑AAAAAAAATT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                                                                               <  1:1265569/124‑1 (MQ=255)
      atattatTTTTTTATTTTTTTTTTTTTTATTTAAATTTTTAAAAAATTAATTTTAAATTTTT‑AAAAATTTTT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATTTAAATTTTAGGTATTTTGTTGTCTa                                                                                                                                <  1:7650412/127‑1 (MQ=255)
       tattttgattttATATATTTTTTGTATTTGCAAATTTTTAAAAAATTAA‑TTTTAACTTTT‑AAAAAAAACC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                                                                              <  2:2365167/120‑1 (MQ=255)
       tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTT‑TAA‑TGGAAAAATAAATTTTAGTTATTTTTTTTTATAAGt                                                                                                                             >  1:6978261/1‑128 (MQ=255)
       tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGTAATTTTAAATTTTATTTATTTTTTTTTATaata                                                                                                                             >  2:7201014/1‑126 (MQ=255)
        attatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTTATAA‑TTAAAATATAAATTTTATTTATTTTTTTTTATAATTAt                                                                                                                           >  2:6072939/1‑128 (MQ=255)
            tCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAT‑TTGAATTATAATTTTTTGGTTTTTTTTTGTGTAATTAtat                                                                                                                         >  1:944678/1‑126 (MQ=255)
              ttttttttatttttttttATATTAAAATTTTTAAAAAATAAA‑TTTTAAATTTA‑AAAAAATAG‑‑‑ATTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaa                                                                                                                      <  2:8586937/118‑1 (MQ=255)
                tttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TTTAAAAAAAAATTTTAGTTTTTTTTTTGTTTATTTATATaaaa                                                                                                                     >  2:9523405/1‑128 (MQ=255)
                    tttatTTTTTGTATTTTAAAATTTTTAAAAAATTAA‑TTTTAAATTTT‑AAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑g                                                                                                              <  2:8944344/126‑1 (MQ=255)
                     tatttttttttttATTCAAATTTTTATAAAATTTT‑TTTTAAATTTTAAAAAAATTCCT‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                                                                                  <  1:7342141/125‑1 (MQ=255)
                            tttttttttcAAATTTTTAAAAAATTAA‑TTTTTAATTTT‑AAAAAATATC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTTTAAGTATCTAAAAAAATA‑GAAAGGa                                                                                                        <  1:6045033/119‑1 (MQ=255)
                            ttttttatGAAAATTTTTAAAAAATTAT‑TTTTAACTTTT‑AAAAAATATC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGaa                                                                                                       <  1:1072304/123‑1 (MQ=255)
                            ttGTATATGCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGTAAATAATAATTTTTGTTATTTTTTTTTCTAATTATAAAAAAAAATT‑AAAAgaa                                                                                                        >  2:5382666/1‑126 (MQ=255)
                             ttttattttaatttttTAAAAATTTAT‑TTTTAAATTTT‑‑AAAAATATT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGaaa                                                                                                      <  2:912876/116‑1 (MQ=255)
                             tGTATATGCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTTAAAA‑TGTAAATATAAATTTTAGGAATTTTTTTGAAAAAGAATCAAAAAAAATA‑TAAATGaaa                                                                                                      >  1:4803263/1‑128 (MQ=255)
                                   tGCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTTAA‑TGTAAATTAAATTTTTAGTTTTTTTTTTTTATAATTATATAAAAAAATA‑TAAATTAAAAAata                                                                                                 >  2:3628331/1‑128 (MQ=255)
                                    gCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTTAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTATATTTATGTTAAAAATTA‑TATATTAAAAAatat                                                                                                >  2:5224996/1‑128 (MQ=255)
                                    gCAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGAAAATAAAAATTTTATTTTTTTTTTTGTAAAATTTAAAAAAAAAATA‑TAAAGATAAAAattt                                                                                                >  1:4637568/1‑126 (MQ=255)
                                     cAAATTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATAAAAATTTTATTTTTTTTTTTTTGTAATTTTATAAAAAAATA‑TAAAGAAATAAATAtt                                                                                               >  2:588964/1‑128 (MQ=255)
                                      aaaTTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTTAATTGTAATTATAAATTATATTTATTTTTTTTTAAAATAATTAAAAAAAATT‑AAAAATAAAAAAAAtt                                                                                               >  1:1716300/1‑128 (MQ=255)
                                      aaaTTTTTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TTTAAATAAAAATTTTATTTATTTTGTTTTATTATTTTATAAAAAAATA‑AAAAGTAAAAAAttttt                                                                                              >  2:9668892/1‑127 (MQ=255)
                                         tttttaataatttaa‑tttttaatttT‑TAAAAATTTT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTa                                                                                           <  2:7416384/117‑1 (MQ=255)
                                         ttttTAAAAAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGAAAATATAAATTTTATTTATTTTTTTTTAAATTTTTATAAAAAAATA‑TAAATTAAAAAATATTTTTa                                                                                           >  1:516616/1‑128 (MQ=255)
                                              tataatttta‑ttTTAATTTTT‑AAAAAATTTT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGt                                                                                      <  2:1398577/119‑1 (MQ=255)
                                              taaaaattaattTTTAATTTTT‑AAAAAAT‑TT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGt                                                                                      <  1:3597627/124‑1 (MQ=255)
                                              aaaaaaTTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTAAAA‑TGTAATATTAAATTTTAGGTATTTTTTTTTAAAATTAAGTAAAAAAATA‑TAATGTAAAAAAATTTTTTaaaata                                                                                      >  2:3249642/1‑126 (MQ=255)
                                               aaaaattaa‑ttTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGTAAATATAAATTTTAGTAATTTTTTTGTAAAATTATATAAAAAAATA‑AAAAGTAAAAAATATTGTTAAAAGTa                                                                                     >  2:9358866/4‑128 (MQ=255)
                                                  aattta‑ttTTAAATTGT‑AAAAAATA‑T‑‑GTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATAc                                                                                 <  1:8845192/128‑1 (MQ=255)
                                                  aattaa‑ttTGAACTTGT‑AAAAAATAGCT‑TTTTTTTTTTTTTTTTTTTTTAA‑TGGAAATATAAATTTTAGGTTTTTTTTTGTATAATTATATAAAAAAATA‑GAAAGGAAAAAATTTTTTTAAAATTAAt                                                                                   >  2:6973520/1‑128 (MQ=255)
                                                  aattaa‑ttTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTAAAA‑TTAAAAAATAAATTTTATTTATTTTTTTGTAAAATTATAAAAAAAAATA‑AAAATTAAAAAATTTTTTTAAATTTAATa                                                                                  >  1:9881051/1‑128 (MQ=255)
                                                  aattaa‑ttTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTT‑TTA‑TGGAAATATTATTTTTTGGTATTTTGTTGTAT‑TTTTTTAAAAATAATATGTAAGTAAAAAATTTTGTTaaatctaaaac                                                                                 >  2:4686683/1‑120 (MQ=255)
                                                  aattaa‑ttTGAACTTGT‑AAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TTGTAAATTAAATTTTTTGTATTTTTTTGTATAATTATAAAAAAAAATA‑AAAATTAAAAAATATTTTTATATataataa                                                                                 >  1:6558981/1‑127 (MQ=255)
                                                   attaa‑ttTTTAATTGT‑AAAAAATATT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATAc                                                                                 <  1:8685041/128‑1 (MQ=255)
                                                   attaa‑ttTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTAAAA‑TGTAAAAAAAAATTTTAGTTATTTTTTTGTATAATTAAAAAAAAAAAAA‑AAAAGTAAAAAATTTTTTTaaaataaaaaa                                                                                 >  1:4243623/1‑121 (MQ=255)
                                                   attaa‑ttTGAACTTGT‑AAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TTGAAATATAAATTTTTGTTATTTTTTTGTATAATTATAAAAAAAAAAA‑AAAAGTAAAAAAAATTTTTTAAATTAATaaa                                                                                >  1:820725/1‑126 (MQ=255)
                                                   attaa‑ttTGAACTTGT‑AAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGTAAATATAAATTTTATTTATTTTGTTGTATAATTTTATAAAAAAATA‑AAATGTAAAAAATATTTTTAAAATTtataat                                                                                >  2:10267343/1‑126 (MQ=255)
                                                    ttaa‑ttTGAACTTGT‑AAAAAATAGCT‑TTTTTTTTTTTTTTTTTTTATAA‑TGTAAATATAAATTTTAGTTATTTTTTTTTATAATTTTATAAAAAAATA‑TAAAGTAAAAAATTTTTTTAAATGTAATaa                                                                                 >  2:6303119/1‑127 (MQ=255)
                                                    ttaa‑ttTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTT‑TAA‑TTAAAAAAAAAATTTTAGTTTTTTTTTTTTAAAATTATAAAAAAAAATA‑AAAATAAAAAAATATTTTTAAAATTAataata                                                                               >  1:3192438/1‑128 (MQ=255)
                                                    ttaa‑ttTGAACTTGT‑AAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTATTTATTTTTTTTTATAAGTATATAAAAAAATA‑TAAAGGAAAAAATATTTTTAAAATTAATaaaa                                                                               >  2:1987939/1‑125 (MQ=255)
                                                    ttaa‑ttTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑TTTTTTTTTTTTTTTATAT‑TGTAAATATAAATTTTTGGTTTTTTTTTTTCTAAGTATATAAAAAAATA‑TAAAGTAAAAAATATTTTTAAAAGTATTAATtaaa                                                                            >  1:9746437/1‑128 (MQ=255)
                                                           tGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAT‑TTTAAATATAATTTTTTTTTTTTTTTTTTTATATTTATATAAAAAAATA‑TAATTTAAAAAATTTTTTTAAAATTatataaaaattt                                                                          >  2:4084171/1‑117 (MQ=255)
                                                            gAACTTGT‑AAAAAATAGCT‑TTTTTTTTTTTTTTTTTTTATAA‑TGTAAATATAAATTTTAGTTATTTTGTTGAATAAGTATAAAAAAAAATA‑TAAAGAAAAAAAAATTTTTAAAATTAATACAAAAatt                                                                          >  1:2524863/1‑128 (MQ=255)
                                                             aaCTTTT‑AAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                                                                      <  1:9057784/128‑1 (MQ=255)
                                                              aCTTGT‑AAAAAATAGCT‑TTTTTTTTTTTTTTTTTTTAAAA‑TGTAAATAAAAATTTTAGTTTTTTTTTTTTATATGTAAATAAAAAAATA‑TAAAAAAAAAAATTATGTTAAATTTAATAATAAAatttt                                                                        >  2:1805968/1‑126 (MQ=255)
                                                                     tttataattttttttttttttttttttttttATAA‑TTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt                                                                   <  2:5032067/116‑1 (MQ=255)
                                                                     aaaaaaTAGC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTTTTTTGTTTTATAATTATCTAAAAAAATT‑AAAAGTAAAAAATATTTTTAAAATTAAAAATAAAATTATTTAAtttt                                                                >  2:7924906/1‑128 (MQ=255)
                                                                       aaaaTAGCTTTTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTTTTTTATAAGTTTATAAAAAAATA‑TAAAGTAAATAATATTTTTAAAATTAATAAAAAAATTATTTAAtta                                                                 >  2:812133/1‑126 (MQ=255)
                                                                         aaTAGC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGTTATTTTGTTTTATAATTATAAAAAAAAATA‑TAAAGAAAAAAATATTTTTAAATTTAATAAAAAAATTATTATATTttaat                                                             >  2:3811484/1‑128 (MQ=255)
                                                                          aaatttttttttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaa                                                              <  2:8434002/121‑1 (MQ=255)
                                                                           tAGC‑‑TTTTTTTTTTTTTTTTTTTTAAA‑TGTAAATTAAATTTTTTGTTATTTTGTT‑TAAAATTTTAAAAAAAAAAA‑TAAAAGAAAAAAATTTTTTTAAAATAATAAATAAATTATTTAATTtttaataa                                                          >  1:7875717/1‑128 (MQ=255)
                                                                           aaattttttttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat                                                             <  1:5001713/122‑1 (MQ=255)
                                                                             tttttttttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                           <  1:2373242/124‑1 (MQ=255)
                                                                             attttttttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                           <  1:268773/124‑1 (MQ=255)
                                                                              atttttttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaattaa                                                          <  1:1021615/125‑1 (MQ=255)
                                                                                  ttttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACt                                                      <  2:10096816/128‑1 (MQ=255)
                                                                                   tttttttttttttttttAAAT‑TGGAATTTTAATTTTTTGTTTTTTTGTTTTAAAATTATCAAAAAAAAAA‑AAAAGGAAAAAATATTGTTAAAATTTATCATAAAAATATTTAATATTAATTaaaatat                                                     >  1:5861687/1‑125 (MQ=255)
                                                                                       tttttttttttttATAA‑TTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaat                                                 <  2:4493243/128‑1 (MQ=255)
                                                                                        ttttttttttttATAA‑TTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaata                                                <  1:3371663/128‑1 (MQ=255)
                                                                                        ttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaata                                                <  1:550702/128‑1 (MQ=255)
                                                                                        ttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaata                                                <  1:1479279/128‑1 (MQ=255)
                                                                                         tttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaataa                                               <  2:5754573/128‑1 (MQ=255)
                                                                                              ttttttA‑AA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAATTATCTAAAAAAAAA‑TAAAGGAAAAAATATTTTTAAATGTAATAATAAAATTATTTAATTTTAATTAAAACTTAAATAAAACaaa                                         >  1:8063297/1‑126 (MQ=255)
                                                                                               tttttATAA‑TTGAAATATAAATTTTAGGTATTTTGTTGTCTTAGTATATAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATa                                         <  2:7699856/128‑1 (MQ=255)
                                                                                                   tataA‑TTGAAATATAAATTTTATGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAAt                                     <  2:3039535/128‑1 (MQ=255)
                                                                                                     taA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATta                                   <  2:10429646/128‑1 (MQ=255)
                                                                                                        attgAAATATAAATTTTATTTATTTTTTTGTATAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaat                                 <  2:6776669/125‑1 (MQ=255)
                                                                                                         ttgAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaata                                <  1:5710833/126‑1 (MQ=255)
                                                                                                           taaaTATAAATTTTATGTATTTTGTTGTCTAAGTATCTAATAAAATA‑GAAAGTAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  2:4880528/127‑1 (MQ=255)
                                                                                                           taaaTATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  2:825948/127‑1 (MQ=255)
                                                                                                           gAAATATAAATTTTATTTATTTTGTTGTCTAATTATACAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  1:4440799/128‑1 (MQ=255)
                                                                                                           gAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  1:3771048/128‑1 (MQ=255)
                                                                                                            aaaTATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaaa                             >  2:8743665/1‑128 (MQ=255)
                                                                                                              atatAAATTTTAGGTATTTTGTTGTCTAAGTATATAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAAt                           <  1:4042640/128‑1 (MQ=255)
                                                                                                                 taAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTATTTAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                        >  2:1594489/1‑128 (MQ=255)
                                                                                                                   taTTTTATGTATTTTTTTGTATAATTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                      <  1:1921656/127‑1 (MQ=255)
                                                                                                                    aTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                     <  2:2490869/128‑1 (MQ=255)
                                                                                                                     ttttAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttat                    >  1:8521572/1‑128 (MQ=255)
                                                                                                                      tttATGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                   <  1:5344558/128‑1 (MQ=255)
                                                                                                                      tttAGGTATTTTGTTGTCTAAGTATCT‑‑AAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                 >  2:1141329/1‑128 (MQ=255)
                                                                                                                        tAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                 >  2:2685559/1‑128 (MQ=255)
                                                                                                                         aGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttattaca                >  1:9588011/1‑126 (MQ=255)
                                                                                                                         aGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAAAAAAAATAGTTTATTaaa                >  1:2857493/1‑128 (MQ=255)
                                                                                                                           gTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACt              <  2:6558981/128‑1 (MQ=255)
                                                                                                                              ttttGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           <  1:10390212/128‑1 (MQ=255)
                                                                                                                               tttGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt          >  1:720188/1‑128 (MQ=255)
                                                                                                                                ttgttgTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         <  1:9274476/128‑1 (MQ=255)
                                                                                                                                ttgttgTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAAAATAAAATTAATAAAAATAGTTTATTAAACTAAttt         >  1:10000058/1‑128 (MQ=255)
                                                                                                                                ttgttgTATAAGTATATAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         <  2:2835609/128‑1 (MQ=255)
                                                                                                                                 tgttttATAAGTATATAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc        <  2:3435128/128‑1 (MQ=255)
                                                                                                                                   ttgtCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt      <  2:4346683/128‑1 (MQ=255)
                                                                                                                                   ttgtCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAAATAATTTctt      >  1:6808259/1‑126 (MQ=255)
                                                                                                                                   ttgtCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATCAATAAAAATAGTTTATTAAACTAATTTCGt      <  1:2075042/128‑1 (MQ=255)
                                                                                                                                   ttgtATAAGTATATTAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt      <  1:6314463/128‑1 (MQ=255)
                                                                                                                                    tgtCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGtt     <  1:2236635/128‑1 (MQ=255)
                                                                                                                                     gtCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGttt    <  1:8334387/128‑1 (MQ=255)
                                                                                                                                      tCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTg   <  2:2216276/128‑1 (MQ=255)
                                                                                                                                       cTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTTATACTAAAATTATTTAATGTTAATTAAAACTTTAATAAAACATAAAATTAATAAAAATAGTTTATTTAACTAAATTCGttata  >  2:5561207/1‑125 (MQ=255)
                                                                                                                                       cTAAGTATATAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGa  <  1:3017843/128‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                
CTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAA‑TTTGAACTTGT‑AAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165173‑165430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑