Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4620CA32.1% 766.2 / 102.6 511intergenic (+240/‑435)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (210/135);  new base A (24/139);  total (234/277)
Fisher's exact test for biased strand distribution p-value = 6.37e-24
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 533 total aligned reads displayed.

TATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATAT  >  CP016816/202335‑202592
                                                                                                                                |                                                                                                                                  
tataGATTAAAGTATAAGTTGTGAAGTTAGTGTAAATTATAGATTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTaac                                                                                                                                    <  1:2187767/128‑1 (MQ=255)
tataGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTcac                                                                                                                                    <  2:2339834/128‑1 (MQ=255)
  taGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTATATCTTCACaa                                                                                                                                  >  2:2569432/1‑128 (MQ=255)
  taGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAAAAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACaa                                                                                                                                  <  1:2939919/128‑1 (MQ=255)
     aTTAAAGTAAAAGTAGTGAATTTAGTTTAAATATTACAGTTAAGGTTAATTAAAATAACATAAACTTAATATTTCTTATAATGTAGTTCCTCCGGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATa                                                                                                                               <  1:1006426/128‑1 (MQ=255)
      ttAAAGTAAAAGTAGTTAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATaa                                                                                                                              <  2:2124073/128‑1 (MQ=255)
      ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTA‑TTTTTTTATTATTTTATCTTCACAAATaa                                                                                                                              >  1:2540416/1‑128 (MQ=255)
       tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCCTCGTGATCTA‑TATTATAATTATATTATCTTAACAAATaaa                                                                                                                             >  1:949887/1‑128 (MQ=255)
       tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATaaa                                                                                                                             >  1:2681708/1‑128 (MQ=255)
        aaagtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTA‑ATATTATATTTGTTTATCTTAACAAATaaaa                                                                                                                            >  2:1244458/1‑128 (MQ=255)
        aaagtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATaaaa                                                                                                                            <  2:1544473/128‑1 (MQ=255)
        aaagtaaaagtaGTGAACTTAGTTTAAATAATATAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATaaaa                                                                                                                            <  1:1485572/128‑1 (MQ=255)
           gtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCATCTTTATCTA‑TTTTTTTATTTATTTATATTAAAAAATaaaaaaa                                                                                                                         >  2:747539/1‑128 (MQ=255)
           gtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATaaaaaaa                                                                                                                         <  1:2411843/128‑1 (MQ=255)
              aaattaGTGAAGTTAGTGTAAATAATATAGATAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAAAGTATATCCACCTGATCTA‑‑TTTTTTATTTGATTATCTTCACAAATAAAAAAAAAAc                                                                                                                     <  2:1909527/128‑1 (MQ=255)
              aaagtaGTGAAGTTTGTTTAAATAATAGAGTTAAGTTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATaaaaaaaaaa                                                                                                                      <  1:2268222/128‑1 (MQ=255)
              aaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATaaaaaaaaaa                                                                                                                      <  2:1787109/128‑1 (MQ=255)
               aagtaGTTAATTTATTGTAAATAATATATTTAAGGTAAATTAAAATACCATAAACTTAATAATTAATATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                     <  1:829630/128‑1 (MQ=255)
                agtagtTAATTTATTGTAAATAATATATTTAATGTTAATTAAAATAAAATAAACTTAATAATTCTAATAATGTAGATCCACGTGATCTA‑TTTTTTTATTTGATTATCTTCACAAATAAAAAAAAAACa                                                                                                                    <  2:247125/128‑1 (MQ=255)
                agtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACa                                                                                                                    <  1:427352/128‑1 (MQ=255)
                 gtagtGAAGTTAGTGTAAATAATATTGTTAAGGTTAATTAAAATACAATAAAATTAATAATTCTAATAATGTATAACCTCGTCATCTA‑TTTTTTTATTTGTTTAACTTCACAAATaaaaaaaaacaat                                                                                                                   <  2:930218/128‑5 (MQ=255)
                 gtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAAAATAAACTTAATAAATCTTATAATTTAAATAATAAAAATCTA‑TTAAATAATAATAATATCTACACAAATAaaaaaaaaaaaa                                                                                                                   >  1:1968672/1‑128 (MQ=255)
                  tattGAAGTTAGTTTAAATAATAGATTTAAGTTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                  <  1:1403993/125‑1 (MQ=255)
                  tagtTAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                  <  2:2253265/128‑1 (MQ=255)
                  tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTA‑ATTTTATATTTGTTTATCTTAACAAATAAAAAAAAAAAAAt                                                                                                                  >  1:1592948/1‑128 (MQ=255)
                  tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                  <  2:722959/128‑1 (MQ=255)
                   agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAGCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                 <  2:1454417/128‑1 (MQ=255)
                   agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCCTCGTTATCTA‑TTATAATAAAAATATATATTCACAAATAaaaaaaaaaaaaac                                                                                                                 >  1:1267747/1‑126 (MQ=255)
                   agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCTAGATCTA‑TTTTATTATTTATTTATCTTCACAAATAAAAAAAAAACaaaa                                                                                                                 >  1:1833793/1‑126 (MQ=255)
                   agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAAATAAATAATTCTAAAAATATAAAAACTCTTGAACTA‑TTATTAAATTTAATAAAAATAACAaaaaaaaaaaaaaaaaaa                                                                                                                 >  1:494837/1‑126 (MQ=255)
                    ttttaGTTATTTTAAATAATATAGTTAATGTTAATTAAAATTACATATACTTTATAATTCTTAAAATGTATATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                                <  2:3127029/124‑1 (MQ=255)
                    gtctaGTTATTGTAAATAATTGTGGTAAGTTTAATTAAAATAACATAAACTTAATAATTCATATAATGTAGATCCTCGTGATCTA‑TTTTTTTTATTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                                <  2:2009801/124‑1 (MQ=255)
                    gagAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                                <  2:2656329/126‑1 (MQ=255)
                      gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAAAACCATAAACTTAATAATTCTTATAATGTAGATCATCTAGATCTA‑TATTATTAAATAAATATATTCACAAATAAAAAAAAAACaaaaaaa                                                                                                              >  1:23228/1‑123 (MQ=255)
                       aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACCt                                                                                                             >  1:3203469/1‑128 (MQ=255)
                        attttttttAATTATTAGAGTTAATGTTAATTAAAATTCCTTAAAATTAATAATTCTTTTAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                            <  1:570082/120‑1 (MQ=255)
                        aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAAATCATCTTTATCTA‑TTTTTTTATATATATATATAAAAAAATAaaaaaaaaaaaaaaaaaaa                                                                                                            >  1:526131/1‑121 (MQ=255)
                        aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATccccat                                                                                                            >  2:2431593/1‑126 (MQ=255)
                         gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCATATTAATCTA‑TTTTATAAAATATAAATATTaaaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                           >  1:1925632/1‑120 (MQ=255)
                         gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACCtaa                                                                                                           >  2:346510/1‑126 (MQ=255)
                         gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATcacatta                                                                                                           >  1:1081783/1‑122 (MQ=255)
                         gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcccataa                                                                                                           >  1:2904223/1‑124 (MQ=255)
                         gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                           <  2:2492011/128‑2 (MQ=255)
                         gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACCtta                                                                                                           >  2:2768213/1‑127 (MQ=255)
                          ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTA‑TATTATTAAATAAATATCTTCACAAATAAAAAAAAAACaaaaacaataa                                                                                                          >  2:3044493/1‑119 (MQ=255)
                           tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTATTATTTTTTTAAATTCACAAATAaaaaaaaaaaaaaaaaataaaa                                                                                                         >  1:1534009/1‑118 (MQ=255)
                                  aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACttaaaaattaaa                                                                                                  >  2:2936483/1‑118 (MQ=255)
                                  aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACttaaaaattaaa                                                                                                  >  1:1150731/1‑118 (MQ=255)
                                  aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCAttaaaaataaaa                                                                                                  >  1:2838841/1‑118 (MQ=255)
                                   ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑Ttaaaaattaaaa                                                                                               >  1:3067349/1‑128 (MQ=255)
                                        agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAAACATT‑‑‑AAAAATaaaaaaaaaa                                                                                         >  1:663106/1‑128 (MQ=255)
                                           gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCCAT‑‑‑AAAAATaaaaaaaaaaaaa                                                                                      >  1:1795579/1‑128 (MQ=255)
                                            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                      >  1:3147203/1‑128 (MQ=255)
                                             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAAAAAT‑‑CAAATTAAAAAATaaaaaaaaaaaaaa                                                                                     >  1:1645183/1‑128 (MQ=255)
                                              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                    >  2:2410997/1‑128 (MQ=255)
                                               aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTATTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCAC‑‑‑TAAAAAATaaaaaaaaaaaaaaaaa                                                                                  >  2:1645201/1‑128 (MQ=255)
                                                ttttaattaaAATAAAAAAAAAATAAAAAATAATATAATTTATATCCTCGTGAACTA‑TTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAACAATCCCC‑‑ATAAAAATTaaaaaaaaaaaaaaaaa                                                                                  <  2:786421/126‑1 (MQ=255)
                                                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACAC‑‑‑AAAAAAAATaaaaaaaaaaaaaaaaaa                                                                                 >  1:69321/1‑128 (MQ=255)
                                                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAAACCAATT‑‑AAAAATaaaaaaaaaaaaaaaaa                                                                                  >  1:2650444/1‑128 (MQ=255)
                                                 gtttaataaaataaaaAAAAAATAAAAATTCTAAAAAATTAAATACTCTTTATATA‑TTTTTTTAATTTTTTAAATTCAAAAAAAAAAAAAAAAAAAACCCC‑‑ATAAAAATTaaaaaaaaaaaaaaaaaa                                                                                 <  2:140350/122‑1 (MQ=255)
                                                 gTTAATTAAAATACCATAAACTTAATAATTCTTATAATATATATCCTCATAAACTA‑TATATATAATTATTAATCTTCACAAATAAAAAAAAAAAAAACACATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                   >  1:2028981/1‑128 (MQ=255)
                                                  ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCAC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaa                                                                                >  2:3155066/1‑128 (MQ=255)
                                                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                               >  1:3026621/1‑128 (MQ=255)
                                                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTAGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaac                                                                               >  1:761257/1‑127 (MQ=255)
                                                     attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTATTATATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACCCATTAAAAATAaaaaaaaaaaaaaaaaaaaaaa                                                                               >  2:1295156/1‑128 (MQ=255)
                                                       taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATAAAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                          >  2:410217/1‑124 (MQ=255)
                                                       taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAACAATCCAC‑‑‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAATaa                                                                          >  1:1701413/1‑128 (MQ=255)
                                                        aaaaaaacttAAAATTAATAATTATTAAAAAGTTCATCATCG‑GTTATATTTTTTTTATTTTTTTTTATTAACAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTaaa                                                                         <  1:2864008/119‑1 (MQ=255)
                                                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                          >  1:2561127/1‑124 (MQ=255)
                                                           aaaacataaacataaaAATTCTTAAAATTTAGATCATCTTTTTATA‑TTTTTTTATTTTTTTATCTTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                       <  1:1104681/124‑1 (MQ=255)
                                                              acATAAAATAAAAAATTATTAAAAATTACAACATCCTTATATA‑TTTTTTTATTTGTTTATCTTAAACAATAAAAAAAAAAAAAACCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                     <  1:279247/127‑1 (MQ=255)
                                                                    aCTTAATAATTATTATAAATTACATACTCGTTTTATA‑TTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                              <  2:51903/128‑1 (MQ=255)
                                                                        tataatTCTTATAATTTATATTATCGTTTTTTT‑ATTTTTTATTTTTTTATATTTAAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                         <  2:2893562/127‑1 (MQ=255)
                                                                        aataatTTTTATAATTTATATACTCTGTATCTT‑TTTTTTTATTTTTTTATATTCA‑AAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                        <  2:563184/128‑1 (MQ=255)
                                                                           aaatCTTATTATTTACTTGCTCGTGATTTA‑TTTTTTTATTTTTTAATATTCACAAAATAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                       <  2:2538118/125‑1 (MQ=255)
                                                                                 tataATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                 <  2:2746165/66‑1 (MQ=255)
                                                                                       ttatatacTCGTTATATA‑TTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                           <  2:1172223/121‑1 (MQ=255)
                                                                                           atactatttttatA‑TTTTTTTATTTGTTTAAATTAACAAATAAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                      <  2:866946/116‑1 (MQ=255)
                                                                                            taatctttatatA‑TTTTTTAATTTTTTTATCATAAAAAAAAAAAAAAAAACAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                      <  2:2990024/117‑1 (MQ=255)
                                                                                             aatctttatata‑tttttttattttttTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                     <  2:1357047/118‑1 (MQ=255)
                                                                                             aaatttttaata‑tttttttattttttTATATTCACAAAAAAAAAAAAAAAAAATACC‑CTTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                      <  2:2823879/118‑1 (MQ=255)
                                                                                              actttttattattttttttatttttttaTATTAAAAAATAAAAAAAAAAAAATACCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                      <  1:344062/116‑1 (MQ=255)
                                                                                                tgtgttatA‑TTTTTTTATTTGTTTATATTAACAAA‑AAAAAAAAAA‑AATACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                <  2:2623042/121‑1 (MQ=255)
                                                                                                agttatata‑tttttttattttttTATATTAAAAAATAAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                  <  1:259865/121‑1 (MQ=255)
                                                                                                  tgttatatttttttttttttttTATTTATAAAAATAAAAAATATA‑AATTACC‑‑TTAAAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                <  2:1713310/120‑1 (MQ=255)
                                                                                                   tttata‑tttttttattttttTATATTAAAAAATAAAAAAAAAAAAATACCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                <  2:1112201/124‑1 (MQ=255)
                                                                                                    tttattttttttttttttttttttttATAAAATAAAAAAAAAAAAATCACC‑TTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                <  2:46182/122‑1 (MQ=255)
                                                                                                    ttattaattttttATTTTTTTTTATTAAAAAAAAAAAAAAAAAAAATACCC‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                <  2:2718521/121‑1 (MQ=255)
                                                                                                      caa‑tttttttatttttttATATTAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                          <  2:2196565/126‑1 (MQ=255)
                                                                                                       tattttttttatttttttttattAAAAAATAAAAAAAAAAAAATAACC‑‑‑TAAAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                           <  1:734131/125‑1 (MQ=255)
                                                                                                            ttttttttttttTATTTTAAAAAATAAAAAAAAAACAAAAACC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                       <  2:1465762/128‑1 (MQ=255)
                                                                                                               tttttttttttTCTTTAAAAATAAAAAAAAAAAAATACCCTT‑‑‑ATAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                   <  1:379006/125‑1 (MQ=255)
                                                                                                               ttATTTTTTTATAATAAAAAATAAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                    <  2:377920/128‑1 (MQ=255)
                                                                                                                 tttttttTATATTAAAAAATAAAAAAAAAAAAAAAACC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                  <  1:2730196/127‑1 (MQ=255)
                                                                                                                 aTTTTTTTATATTTAAAAATAAAAAAAAAAAAAACACC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                 <  2:601305/128‑1 (MQ=255)
                                                                                                                 aTTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAAATAAATTTATTAAAATAACATATTATACAACATTTTATTTTTaaaataaaat               >  2:2858006/1‑128 (MQ=255)
                                                                                                                   ttttttATATTCAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                <  2:3188396/125‑1 (MQ=255)
                                                                                                                     ttttATTTTTACAAATAAAAAAAAAAAAAATAC‑‑ATTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt            <  1:2485768/127‑1 (MQ=255)
                                                                                                                        tATCTACACAAATAAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACAAAAAACAAAATATATTATATAAAATAAAATATTTTAAAACTTTTAATTTTTAAAATAATAAAttat          >  1:2455517/1‑126 (MQ=255)
                                                                                                                                caAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACACTATTTATTAAAAATCCAAATTTAACAACATTTTATTTTAAAAATAAAATATTTAAAAAatat  >  1:2752206/1‑128 (MQ=255)
                                                                                                                                |                                                                                                                                  
TATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATAT  >  CP016816/202335‑202592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑