New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486212 (0.060)525 (0.140) 100/252 54.4 68.6% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 269 (0.070)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 699 total aligned reads displayed.

GTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202366‑202617
                                                                                                                             |                                                                                                                                  
    ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑Ttaaa‑aat‑t‑aaaa                                                                                                                        >  2:6720746/1‑128 (MQ=255)
    ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑Ttaaa‑aat‑t‑aaaa                                                                                                                        >  1:5956725/1‑128 (MQ=255)
     taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑ttaaa‑aat‑t‑aaaaa                                                                                                                       >  1:6367838/1‑128 (MQ=255)
       ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑aaaaaaa                                                                                                                     >  1:1918502/1‑128 (MQ=255)
         agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAAAAAAAACATT‑‑‑AA‑AAA‑T‑aaaaaaaaaa                                                                                                                  >  2:1963648/1‑128 (MQ=255)
          gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑aaaaaaaaaa                                                                                                                  >  2:918209/1‑128 (MQ=255)
          gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATATGTTTA‑TATTAACAAATAAAAAAAAAACAATACCC‑‑TTAAA‑AAT‑T‑aaaaaaaaaa                                                                                                                  >  2:2563863/1‑128 (MQ=255)
          gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTTTTTA‑TCTTCACAAATAAAAAAAAAACAATAAC‑‑ATTAAA‑AAT‑T‑aaaaaaaaaa                                                                                                                  >  2:3917581/1‑128 (MQ=255)
            gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATA‑TCATCACAAATAAAAAAAAAAAAAAACCC‑‑ATAAA‑AAA‑T‑aaaaaaaaaaaa                                                                                                                >  1:3047459/1‑128 (MQ=255)
             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCAT‑‑‑AA‑AAA‑T‑aaaaaaaaaaaaaa                                                                                                              >  1:6869045/1‑128 (MQ=255)
              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCAC‑‑ATAAAA‑AAA‑T‑aaaaaaaaaaaaaa                                                                                                              >  2:1887627/1‑128 (MQ=255)
              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAAACCC‑‑ATTAAA‑AAT‑T‑aaaaaaaaaaaaaa                                                                                                              >  2:6972569/1‑128 (MQ=255)
              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCTTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAAAAATCAC‑‑‑ATAAA‑AAA‑T‑aaaaaaaaaaaaaaa                                                                                                             >  1:2854784/1‑128 (MQ=255)
               attggaaattaaAATAACATAAAATTAATAATTCTTATAATTTATATCCTCGTGTTTATTTTTTTTATTTTTTTA‑TCTTAAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑AAT‑T‑aaaaaaaaaaaaaaa                                                                                                             <  1:6574325/122‑1 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑aaaaaaaaaaaaaaa                                                                                                             >  1:6273252/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCAC‑‑‑TAAA‑AAA‑T‑taaaaaaaaaaaaaaa                                                                                                            >  1:5218974/1‑128 (MQ=255)
               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑aaaaaaaaaaaaaaaa                                                                                                            >  1:6726956/1‑128 (MQ=255)
               aaGGTTAATTAAAATACAATAAAATTAATAATTCTTATAATGTAGATCCTCTTTATATATTTTTTAATTTGTTAA‑ACTAAACAAATAAAAAAAAAAACAAAAC‑‑AATAAA‑AAA‑T‑aaaaaaaaaaaaaaa                                                                                                             >  2:7071249/1‑128 (MQ=255)
                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TATTCACAAATAAAAAAAAAACAA‑‑AACAATTAAA‑AAA‑T‑aaaaaaaaaaaaaaaa                                                                                                            >  1:7335431/1‑128 (MQ=255)
                aGGTTAATTAAAATAAAAAAAAATTAATAATTATTATAATTTAAATAATCCTTATCTATTTTTTTTTTTTTTTA‑ACTTAAAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑aaaaaaaaaaaaaaaa                                                                                                            <  2:7181077/128‑1 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCATCTTAATCTATTTATTTATTTATTAA‑TCTTAACAAAAAAAAAAAAAAAAA‑‑AACAATTAAA‑AAT‑T‑aaaaaaaaaaaaaaaaa                                                                                                           >  1:4737562/1‑128 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑ttaaa‑aat‑t‑aaaaactcaccagttga                                                                                                           >  1:6762385/1‑116 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAAACCC‑‑ATTAAA‑AAT‑T‑aaaaaaaaaaaaaaaaa                                                                                                           >  1:2012265/1‑128 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TATTCACAAATAAAAAAAAAACAATCCAC‑‑‑TAAA‑AAA‑T‑taaaaaaaaaaaaaaaaa                                                                                                          >  1:7047886/1‑128 (MQ=255)
                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAAAAATCCAC‑‑TTAAA‑AAT‑T‑aaaaaaaaaaaaaaaaaa                                                                                                          >  1:1117377/1‑128 (MQ=255)
                  ttttatttaAATAAAAAAAAATTAATAATTTTTATAATTTTTATAATAGTTTTATATTTTTTTATTTTTTTA‑TATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AAT‑T‑aaaaaaaaaaaaaaaaaa                                                                                                          <  1:7631793/124‑1 (MQ=255)
                  tttaaataaAAAACCATAAACATAAAAATTATAATTATTTTCAAACAGGTGAACTATTTTTTTATTTTTTTA‑AATTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑aaaaaaaaaaaaaaaaaa                                                                                                          <  1:7273355/127‑1 (MQ=255)
                  gTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGTAGATCCTCGTGATCTATTTTTTAATTAGTTTA‑TCTTCACAAATAAAAAAAAAAAAATAACC‑‑‑TAAA‑AAA‑T‑aaaaaaaaaaaaaaaaaaa                                                                                                         >  2:4180665/1‑128 (MQ=255)
                   ttaattaaAATACCATAAACTTAATAATTATTATAATTTATATAATAGTGATCTATTTATTTATATTATAA‑ACTTCACAAATAAAAAAAAAACAAACCC‑‑‑ATAAA‑AAA‑T‑taaaaaaaaaaaaaaaaaaa                                                                                                        >  2:5714551/1‑128 (MQ=255)
                    taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑aaaaaaaaaaaaaaaaaaaa                                                                                                        >  2:7430712/1‑128 (MQ=255)
                    taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTTTTTA‑TCTTAACAAATAAAAAAAAAA‑AAT‑‑AAAATTAAA‑AAT‑T‑aaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:509617/1‑128 (MQ=255)
                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAAACAAC‑‑TTAAA‑AAT‑T‑aaaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:2333359/1‑128 (MQ=255)
                       ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  2:6043154/1‑126 (MQ=255)
                       ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTAA‑TCTTCACAAATAAAAAAAAAACAATACACTTAAAAA‑Taa‑a‑aaaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:4413303/1‑128 (MQ=255)
                       ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATATGTTTA‑TCATCACAAATAAAAAAAAAACAAACACAATAAAAA‑Taa‑a‑aaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:2860689/1‑128 (MQ=255)
                        taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTAA‑TCTTCACAAATAAAAAAAAAAAAAACCC‑‑AATAAA‑AAT‑T‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:2573906/1‑125 (MQ=255)
                           atttataTAAAATTTATTATTATTATATTTTAGTTCTTCTTTATTTATTTTTTTTTTTTTTTT‑TATTAAAAAAATAAAAAAAAAAAATCCCCTT‑‑‑AT‑AAA‑T‑TTAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                                <  1:6124863/122‑1 (MQ=255)
                           aataaaaTAAAAATAATAATTATTATAATTTATATAATCTTTATATATTTTTTTATTTTTTTA‑TATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAA‑T‑TAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                                <  2:2786580/122‑1 (MQ=255)
                           aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAATAACAAT‑CACATTAAAA‑ATT‑T‑AAAAAAAAAAaaaataaaaaaataaa                                                                                                  >  2:7119716/1‑128 (MQ=255)
                           aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:1794880/1‑128 (MQ=255)
                           aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAA‑Taaaaa                                                                                                >  1:3769153/1‑128 (MQ=255)
                             tACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAAATaaaaaa                                                                                               >  1:971409/1‑127 (MQ=255)
                             tACCAAAAAATTAATAATTTATATAATGTATATCCTCGTGATATATTTTTTTAATTTTTTA‑AATAAAAAAATAAAAAAAAAAAAAAACCC‑CTTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                                <  2:6871320/128‑1 (MQ=255)
                              aaaaTAAAATTAAAAATTATTAAAATTTATATACTCGTTATATTTTTTTTTTTTTTTTTT‑TATTTAAAAATAAAAAAAAAACAATACCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                              <  2:6165739/125‑1 (MQ=255)
                               acATAAAAATTATAATTTTTATAAATTATTACATCTTTATTTAATTTTTTATTTTTTTA‑TTTTTAAAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                             <  2:7750944/127‑1 (MQ=255)
                                 aTAAAATTAATAATTATTAAAAATTATTTCCTCTTGATTTTATTTTTTAATTTTTTA‑AATTTACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaaac                                                                                           <  2:5981705/128‑1 (MQ=255)
                                    aaattAAAAAATCTTATAATTTATTTCAACCTGAACAATTTTTTTATTTTTTAA‑TATTAACAAAAAAAAAAAAAACAAAACCC‑‑TTAAA‑AAA‑T‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  2:5253070/125‑1 (MQ=255)
                                       tttataatTTTTATAATTTATATACTCGTTAACTATTTTTTTATTTTTTAA‑TATTCACAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑AAA‑‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                                    <  2:2422768/125‑1 (MQ=255)
                                       ttAATAATTATTTTAATTTATATAATCGTTAATTATTTTTTTATTTTTTTA‑TATAAAAAAAAAAAAAAAAAAAAATCCCCTTAAAAA‑TTA‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  2:6534494/128‑1 (MQ=255)
                                           taatTATAAAAATTTATATCCACTTTATATATTTTTTTTTTTTTTTA‑AAAAAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                <  2:5460922/128‑1 (MQ=255)
                                             atTTTTATAATTTATATCATCGTTTTATATTTTTTTTTTTTTTTA‑TATTAAAAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                <  1:1686500/128‑1 (MQ=255)
                                                        ttattaacacttGATCTATTTTTTTATTTTTTTA‑TATT‑AAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AAA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                                   <  2:7593935/117‑1 (MQ=255)
                                                           taaactagttaTCTATTATTTTATTTTTTTA‑TATTAACAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                 <  2:5872757/118‑1 (MQ=255)
                                                            attcttgTGATCTTATTTTTTATTTTTTTA‑TCTTCAAAAATAAAAAAAAAA‑AATTCCCTT‑‑‑AA‑AAA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  1:752211/122‑1 (MQ=255)
                                                            ataatatttttatATTTTTTTTTTTTTTTT‑TATTAAAAAAAAAAAAAAAAAAAAAAACCTTATAAA‑TTA‑‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                 <  2:264109/116‑1 (MQ=255)
                                                             ttatttttttttatttattTTTTTTTTTA‑AATTAAAAAAAAAAAAAAAAAAAAAACAC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                               <  2:3141501/117‑1 (MQ=255)
                                                                  tttttaaatttttttatttttttA‑AATTAAAAAAAAAAAAAAAAAAAAAACCC‑TTAAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                           <  2:6301436/121‑1 (MQ=255)
                                                                    gtattATTTTTTTTTTTTTTTA‑TATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                        <  1:4033433/124‑1 (MQ=255)
                                                                     ttttatttttttattttttTA‑TATTAAAAAAAAAAAAAAAAAAAAAACCC‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                        <  2:7708966/125‑1 (MQ=255)
                                                                      tttatttttttattttttTA‑TATTAAAAAATAAAAAAAAAAAAAACCCCTTAAAAATTAA‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  1:7744932/126‑1 (MQ=255)
                                                                      tCTATTTTTTTATTTTTTTA‑ATTTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                                      <  2:2714936/128‑1 (MQ=255)
                                                                       ttATTTTTTTTTTTTTTTT‑TATTAAAAAAAAAAAAAAAAAAAATTCCC‑‑ATAAA‑AAT‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                     <  1:7173195/127‑1 (MQ=255)
                                                                        atttttttttttttttTA‑TTTTAAAAAAAAAAAAAAAAAAAAACCC‑‑‑TTAAA‑AAA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  2:6432478/126‑1 (MQ=255)
                                                                         tttttttttttttttTATTATTAAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAA‑T‑TAAAAAATAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  1:6501832/127‑1 (MQ=255)
                                                                         ttttttttATTT‑TTTA‑TTATAAAAAATAAAAAAAAAAAAAATAAACA‑TAAA‑AAA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  1:6397658/127‑1 (MQ=255)
                                                                         atttttttatttttttA‑AATTAAAAAATAAAAAAAAAAAAATACC‑‑ATTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  1:839983/128‑1 (MQ=255)
                                                                         aTTTTTTTTTTTTTTTT‑TATT‑AAAAATAAAAAAAAAAAAAAAAAC‑‑TTAAA‑AAA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                  <  2:2152500/128‑1 (MQ=255)
                                                                          ttttttaATTTGTTTA‑‑ATTAATAAAAAAAAAAAAAAAAAAAACAATAAAAT‑ATA‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  1:5896305/128‑1 (MQ=255)
                                                                           ttttttATTTGTTTT‑TATTTAAAAATAAAAAAAAAAAAAACACCTT‑‑‑AA‑AAA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                <  1:6025571/128‑1 (MQ=255)
                                                                              tttATTTGTTTA‑TTTAAAAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                              <  2:82962/128‑1 (MQ=255)
                                                                                    tttttA‑ACTACAAAAATTAAAAAAAAAAAAAACCC‑ATTAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATCTTTAAAATAAGa                                         <  2:4852184/126‑1 (MQ=255)
                                                                                      ttttataataacaAATAAAAAAAAAAAAAACCCC‑‑TTAAA‑AAA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                       <  2:7888532/118‑1 (MQ=255)
                                                                                       ttA‑TATTTACAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                     <  1:4167825/128‑1 (MQ=255)
                                                                                        tataataaaaaaaTAAAAAAAAAAAAAACACTTAAAAAT‑TAA‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                       <  2:1647185/118‑1 (MQ=255)
                                                                                         tatatttaaaaaTAAAAAAAAAACAATCACC‑‑ATAAA‑AAA‑T‑‑AAAATAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                   <  1:5525896/119‑1 (MQ=255)
                                                                                         tatattaaaaaaTAAAAAAAAAAAAATACCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                    <  2:7278089/119‑1 (MQ=255)
                                                                                         tatatacaaaaataaaataAAAACAATAACATT‑‑‑AA‑TAA‑T‑ATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTGCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                   <  2:4991128/119‑1 (MQ=255)
                                                                                          attataaaaaaTAAAAAAAAAAAAATAACAA‑‑TAAA‑AAA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                   <  2:3629547/120‑1 (MQ=255)
                                                                                          atattaaaaaaaaaaaaaaaaaaaaaACCCA‑‑TAAA‑AAA‑T‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                   <  2:3329998/120‑1 (MQ=255)
                                                                                                  aaaaaaaaaaaaaaaaaaACCC‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                            <  2:662585/128‑1 (MQ=255)
                                                                                                     aaaaaaaaaaaCAATACCCTT‑‑‑AA‑AAA‑T‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCt                     <  2:7338294/127‑1 (MQ=255)
                                                                                                           aaaaaaaaTAACATTTTAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAATCACTATTATACAACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTa                    <  2:2315887/128‑1 (MQ=255)
                                                                                                            aaaaCAATCCCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAATTAATTTATTAAATTTAAATATTATAAAAAATTTTATTTTTAAAATAAAATATTAatataatataaaaaaaaat                 >  2:4083006/1‑119 (MQ=255)
                                                                                                              aaaaaaatacctttAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata                 <  2:5353203/117‑1 (MQ=255)
                                                                                                              aaCAATCCCC‑‑TTAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAATAAAAAAAACAAGTTTTAT‑‑‑ATAAAATAACATAATATACAACATTTTATTATTAAAAAAAATTATTGACATAATATTATTATAatatatta            >  1:712438/1‑126 (MQ=255)
                                                                                                                 aaaataaaattaaa‑aat‑t‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat              <  2:4402165/119‑1 (MQ=255)
                                                                                                                 aaaaatatcattaa‑aaa‑t‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCAAATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat              <  2:1391602/116‑1 (MQ=255)
                                                                                                                   aaaaacattaaa‑aat‑taaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata             <  2:635021/121‑1 (MQ=255)
                                                                                                                    aaccataaaaa‑ata‑a‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata           <  2:6577228/120‑1 (MQ=255)
                                                                                                                     aacccttAAA‑AAA‑T‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat         <  1:660908/123‑1 (MQ=255)
                                                                                                                     aacacttAAA‑AAA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa          <  1:7845912/123‑1 (MQ=255)
                                                                                                                     aaaccctaaa‑aaa‑t‑‑aaaaaaAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat         <  1:6972569/122‑1 (MQ=255)
                                                                                                                      tccccttaa‑aaa‑t‑taaaaaAAAAAAAAAAAAAAACAAAAAACAAACGATATTTATTAAAATACCCTATAAAACACCATTTTATTTTTAAAAAAATATTTTGACATAATATatatataatatatataat         >  2:6765012/8‑128 (MQ=255)
                                                                                                                      ccccttaaa‑aat‑t‑aaaaaAAAAAAAAAAAAAAACCAAAAAACAAACTAAATTTATTAAAATAACCTATTAAACCCAATTTTATTTTTAAAATAAGATATTGACAAAATATATATATAATTTATataat         >  2:4691677/5‑128 (MQ=255)
                                                                                                                      aacataaaa‑aaa‑t‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat         <  2:1698126/122‑1 (MQ=255)
                                                                                                                       ccccttaa‑aaa‑t‑taaaaaAAAAAAAAAAAAAAA‑TAAAAAAAAACAATATTTATAAAAATTACCTATTATACCAAATTTAATTTTTAAAATAAAAAATTTACATAATATATAACTAAAATATaaaaaaa       >  2:3852466/7‑125 (MQ=255)
                                                                                                                        aatttaa‑aat‑t‑aaaaaaAATAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTTCCTATTATACCACATTTTATTTTTAAAATAAGATATTTACATAATATATATCTAATATATATAATAc       <  2:1150319/123‑1 (MQ=255)
                                                                                                                        aattAAA‑AAA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  1:509617/126‑1 (MQ=255)
                                                                                                                         tttATA‑AAT‑T‑TAAAATAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACAACATTTTATTTTTAATATAAGATATTGACATAATATATATCTAATATATATAATACt      <  2:7544202/128‑1 (MQ=255)
                                                                                                                         cttAAA‑AATTT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATTAGATATAtattatgt       <  1:7670971/127‑3 (MQ=255)
                                                                                                                             |                                                                                                                                  
GTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAA‑T‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202366‑202617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.