| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP016816 | 19,523 | (A)11→10 | intergenic (‑244/‑893) | JCVSYN2_00065 ← / → JCVSYN2_00070 | hypothetical protein/tetracycline resistance ribosomal protection protein Tet(M) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 19,513 | 0 | A | . | 91.9% | 5184.3 / inf | 1590 | intergenic (‑234/‑903) | JCVSYN2_00065/JCVSYN2_00070 | hypothetical protein/tetracycline resistance ribosomal protection protein Tet(M) |
| Reads supporting (aligned to +/- strand): ref base A (79/43); new base . (749/633); total (857/733) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.87e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1764 total aligned reads displayed.
CTTCGTTTATCTTGCCTGCTCATTTTTTAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGAAAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTT > CP016816/19385‑19639 | ttCGTTTATCTTGCCTGCTCATTTTTTAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGa > 2:526089/1‑128 (MQ=255) ttCGTTTATCTTGCCTGCTCATTTTTTAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTACGTGGa > 2:2881291/1‑128 (MQ=255) tCGTTTATCTTGCCTGCTCATTTTTTAGTATATTCTTCGAAGCAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAT‑AAAAAAAAAGAGTCATCCGCTATGTGGaa > 1:2533860/1‑128 (MQ=255) tCGTTTATCTTGCCTGCTCATTTTTTAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGaa > 2:2531310/1‑128 (MQ=255) cGTTTATCTTGCCTGCTCATTTTTTAGTATATTCTTCGAAGAAATCACATTACTTTAAATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGaaa < 2:2180724/128‑1 (MQ=255) aagatctCTTTCCTGATCATTTTTTATTATATTCTTCGAAGAAATCAAATTACTTTATATAATGTATAATTCATTATTTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGaaa < 2:4284407/122‑1 (MQ=255) gTTTATCTTGCCTGCTCATTTTTTAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGaaaa > 1:2768454/1‑128 (MQ=255) ttATCTTGCCTGCTCATTTTTTAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCTCTAAG‑AAAAAAAAAGAGTCAACCGCTAGGTGGaaaaaa > 2:665824/1‑128 (MQ=255) ttATCTTGCCTGCTCATTTTTTAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGaaaaaa > 2:4427521/1‑128 (MQ=255) tataTTGCCTGCTCATTTTTTTGTATTTTCTTCTAAGAAATCAAATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGaaaaaaa < 1:1895403/128‑1 (MQ=255) tATCTTTCCTGCTCATTTTTTAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATTCCAATCGCTAAG‑AAAAAAAAATAATCATCATCTAGATGaaaaaaaa > 1:10020/1‑128 (MQ=255) cTGCTCATTTTTTAGTATATTCTTCGAAAAAATCACATTAATTTATATAATGTATAATACATTATTTTATAATGACAATCGCTAAT‑AAAAAAAAATAATCATCCGCTAGGTTG‑AAAAATAAAATGaaa > 1:1353621/1‑128 (MQ=255) caatttttAGTATATTCTTCTAAGAAATCACATTACTTTATATAATGTATAATTAATTATGTGATAATGCCAATCGCTAAT‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCAt < 1:4237428/125‑1 (MQ=255) ttttAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTAcc > 2:3407502/1‑128 (MQ=255) tttaAGTATATTCTTCGAAGAAATCAAATTACTTTATATAATGTATAATTCATTTTGTGATAAAGCCAAACGATAAG‑AAAAAAAAATAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTAcc < 2:3643431/128‑1 (MQ=255) ttaccttcaatTCTTCGAATAAATCAAAATACATAATAAAAATTATAATTCATAATGTGATAATTCCAATCCCAAAC‑AAAAAAAAAGATTCATACCCTAGGTGG‑AAAAAAAAAATGAAAATCATTAcc < 2:1388347/119‑1 (MQ=255) tttAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCTCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTAcag > 2:3208938/1‑126 (MQ=255) tttAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGAAAAAAAAAAATGAAAATCATTAc > 1:1080933/1‑127 (MQ=255) tttAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCg > 2:805249/1‑128 (MQ=255) tttAGTATATTCTTCGAAGAAATCACATTAATTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCg < 2:730126/128‑1 (MQ=255) tataTTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAATAAATGAAAATCATTACAGAGACa > 1:259761/1‑128 (MQ=255) atTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATaa > 1:2253898/1‑128 (MQ=255) atTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCCCTAGGTGG‑AAAAAAAAAATAAAAAAAATTCCCGAggaaaaa > 1:346545/1‑123 (MQ=255) ttattagaataaATAAAATTACTTTATATAATGTATATTTTATTATGTGTTAATGCCATTCTCTTAG‑TAAAATATTGAGTCTTCTGCTTTGT‑GTAAAAAAAAAATGAAAATCATTACCGAGGCATaaa < 1:1664030/122‑1 (MQ=255) tcttcGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCTCTAAG‑AAAAAAAAATAGTCATCCGCTAGGT‑GTAAAAAAAAAATGAAAAACATTACAGAGGAATaaaa > 1:1592645/1‑128 (MQ=255) tcttcGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCCATACCGAGGCATaaaa > 2:589333/1‑128 (MQ=255) tcttcGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATaaaa > 1:3639671/1‑128 (MQ=255) tcttcGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTACGTGG‑AAAAAAAAAATGAAAATCATTAGCGGGGCATaaaa > 1:825465/1‑128 (MQ=255) cttcGAAGATATAACATTATTTAATAAATTGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATaaaaa < 1:2311863/128‑1 (MQ=255) ttcGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATaaaaaa > 2:3939455/1‑128 (MQ=255) aagaaATCACATTACTTTATATAATGTATAATACATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCCTCCGCAACGTGG‑AAAAAAAAAATGAAAATCATTACCGATGAGTAAAAAAatat > 2:2963586/1‑128 (MQ=255) gaaATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTACGTGG‑AAAACAACAATGAAAATCATTCCAGAGGCATAAATCACTATag > 2:4117443/1‑128 (MQ=255) aaaTCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATaga > 1:2465420/1‑128 (MQ=255) aaaTCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑‑AAAAAAAAATGTAAATCAATACCGAGTCATAAAAAAAaatataa > 1:3295070/1‑125 (MQ=255) aataaaattattTTATATTATTTATAATTCATTATGTGATAATTCCAATAGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATagag < 1:4145239/122‑1 (MQ=255) aaTCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGAT‑GTAAAAAAAAAATTAAAATCATTACCTAAACATAAAAAAataaaaat > 1:595313/1‑123 (MQ=255) atattaTTTCTTTATATAATGTATAAATAATTATGTGAATATGAGAATCTCTAAG‑ATAAAAAAAGACGCATCCGCTAGGTGG‑AAAAAAAAAATGAAAAGCATTACCGAGGCATAAAAAAATATAGCgt < 2:4019405/123‑1 (MQ=255) aTCAAATTAATTTTTATAATTTATAATTCATTATGTTATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATTGAgt < 1:406454/128‑1 (MQ=255) acaTTACTTTATATAATGTTTAATTCATTATGTGATAATGCCCAACGGAAAG‑AAAAAACAAGAGGCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTa < 1:767246/128‑1 (MQ=255) acaTTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTa < 2:1002279/128‑1 (MQ=255) acaTTAATTTATATAATGTATAATTCATTATGTGAAAATTCAAATCGCTAAG‑AAAAAAAAAGATTAATCAGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTa < 2:3308211/128‑1 (MQ=255) acaTAACTTTATATAATGTATAATTAATTATGTTAAAATGCCAATCGCAAAG‑AAAAAAAAAGATTCATACGCTACGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTa < 2:4546126/128‑1 (MQ=255) caTTCCTTTATATAAAGTATACTTCATTATGTGATAATGCCAATCGCTAAG‑‑AAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACt < 1:3003734/128‑1 (MQ=255) caTTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAAAATAAATTGTAc > 1:4507294/1‑128 (MQ=255) tACTTTAAATAATGTATAATTGATTATGTGATAAAGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAg < 2:2618813/128‑1 (MQ=255) aCTTTATATAATGTATAATTCATTATGAGATAATTCCAAACGATATC‑AAAAAAAAAGACTCATCCGCTAGGTGGAAAAAAAAAAA‑GAAAAACAATACAGAGCCAAAAAAAAAGATagaaagaactatg > 2:1968981/1‑118 (MQ=255) tataaagtaATGTATAAATCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGAAAAAAAAAAATGAAAATCATTACCTAGGCATAAAAAAAAATAGAGTGTAATAgg > 1:1781170/8‑128 (MQ=255) cTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGa < 2:2060491/128‑1 (MQ=255) tatatataATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGAt < 2:4178854/126‑1 (MQ=255) ttATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGAAAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGAt < 2:3779347/128‑1 (MQ=255) ttATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑‑AAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCg < 1:1546261/128‑1 (MQ=255) atataATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGc < 1:506221/128‑1 (MQ=255) ataATGTATTATTCATTATGTGATAATGCCTATGGTTAAT‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCtt < 1:2675429/128‑1 (MQ=255) taATGTATAATTCATTATTTGATAATGACAATATCTAAG‑AAAAAAAAAGAGTCATCCGCTATGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTg < 2:2688949/128‑1 (MQ=255) taATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTATACTATGATCGCttt > 2:3043124/1‑127 (MQ=255) aTGTATAATTCATTATGTGATAATGCCAATCGCTAAT‑AAAAAAAAAGAGTAATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGcc < 1:2826920/128‑1 (MQ=255) gTATAATTAATTATGTTATAATGCCAATCGCTTAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTg < 1:3096474/128‑1 (MQ=255) taATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAATAAAAAATAGATTGTACTAGGATCGCTTGCGTGTag > 2:4351928/1‑127 (MQ=255) ttCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACtt < 2:1583139/128‑1 (MQ=255) taagtgcaaacgCCAATCGCTATG‑AAAAAAAAAGAGTTATCCGATAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACAcg < 1:2065007/117‑1 (MQ=255) tgtgATACTTACAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTCGGATCGCTTGCCTGTAACTTACAcgcg < 2:2809063/128‑1 (MQ=255) tgtgATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACAcgcg < 2:2253898/128‑1 (MQ=255) tttatatTGCCAATCTCAAAG‑AAATAAAAAGAGTCATCAGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACgcgc < 2:3466007/125‑1 (MQ=255) gtgATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACgcgc < 1:3939455/128‑1 (MQ=255) gtgATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAACGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACgcgc < 2:1087706/128‑1 (MQ=255) gtgATAATGCCAATAGCTAAT‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACgcgc < 1:3381805/128‑1 (MQ=255) tgATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGAAAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCACTTGCCTGTAACTTCCACgcgc > 2:2138638/1‑128 (MQ=255) aTAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCAACCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGCAATAAAAAAATATAGAGTGTACTAGGATCCCTTGCCTGTAACATAAAAGCGACTc > 1:694077/1‑128 (MQ=255) tAATGCCAATCGCTAAG‑AAAAAAAATGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCg < 2:2316332/128‑1 (MQ=255) aaTGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATTGAGAGTACTAGGATCGCTTGCCTGTAACTGACACGCGCCTCGt > 2:1143154/1‑128 (MQ=255) aaTGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCAGAAAAAATTTTATAGTGTACTAGGAACGCTTTCCTGTAACTTTCAcgccacgcgg > 2:1523666/1‑121 (MQ=255) tGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATATAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTAt > 1:1978325/1‑128 (MQ=255) tGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATATAGTGTACTAGGATCGATTGCCTGTACCTTACCCGCGCCTCATag > 1:3999113/1‑127 (MQ=255) ccAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCCCATGCCTGTACCTTACACCCGCcgcgagaga > 1:3181636/1‑123 (MQ=255) ccAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑‑‑AAAAAAAATGAAAATCATTACCGAGGCATAAATAAATTTAGATTGTACTAGGATCGCTTGACTGAACGTTACCCGCTCCTCGTATCttt > 1:911057/1‑128 (MQ=255) cAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGGAACTTACACGCGACTCGTAGCta > 2:2763452/1‑127 (MQ=255) aaTCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATCttt < 1:1419719/128‑1 (MQ=255) aTCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAACAAAGATAGAGGGTACTAGGATCGCTTGCCTGTCCCTAACACCCGCCACGGAtgtgtt > 2:3110442/1‑123 (MQ=255) aTCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATTTAGAGGGTACTAGGCTCGCTTGCCTGTAACATACCCGCGCCTCGtctcgtgt > 1:4404826/1‑124 (MQ=255) cgataat‑aaAAAAAAAGATTCATCCGCTTGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATCTTTTaa < 2:2415907/125‑1 (MQ=255) gCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGAAAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATTTTTTaa > 2:3556123/1‑128 (MQ=255) cTAAGAAAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACAGAGGCTTAAAAAAATTTAGAGTGTAATAGGATCGATTGCCTGTAAATTAAACGAGCAGGGTATGTTTAAat > 1:3733027/1‑128 (MQ=255) cTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATTAAAATCATTACCGAGGCATAAAAAAAAATATATTGTAATATGTACGCATAACTGTAAATTACACGCGACACGTTTCTTTTAatg > 1:1841978/1‑128 (MQ=255) cTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATCTTTTAatg < 1:1186048/128‑1 (MQ=255) aaG‑AAAAAAAAAGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATCTTTTAatgat < 2:3874807/128‑1 (MQ=255) aaaaaaatCAGTCATCCGATATGTGG‑‑AAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATTCAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCTTATCTTTTAATGATGGaat < 1:1260554/128‑1 (MQ=255) aaaaaaaaGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCATGTAACTTACACGCGCCTCGAATCTTTTAATGATGGaa > 2:1312854/1‑128 (MQ=255) aaaaaaaGAGTCATCCGCTAGGTGG‑AAAAAAAAAATGAAATTCATTACCGAGGCATAAAAAAATATAGAGTGTACTTGGATCGCTTGCGTGTAACTTCCACGCGCCTCGGAGCTGTTAAGGCTGGcat > 2:1444224/1‑128 (MQ=255) aaaaaGCGGCACCCGCTAGTTGG‑AAAAAAACCATGAATATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTTCCCGCGCCTCGTATCTTTTAATGATGGaataa < 1:2927918/128‑1 (MQ=255) aaaaGAGTCATCTGCTATGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATCTTTTAATGATGGaataat < 2:1775030/128‑1 (MQ=255) tgcggcaaccGCGAGGGGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGGTTGCCTGTAACTTACACGCGCCTCGTATCTTTTTATGATGGAATAATTTg < 2:941072/120‑1 (MQ=255) agagTCATCCGCTAGGTGG‑AAAAAAAAAATTAAAATCATTACCGGGGCATAAAAAAATATAGAGTGTACAAGGTACGCTTGCCTGTAACTTACACGCGCCACCTTTCTTTTAATGTAGGAATTATTTg > 1:2373935/1‑128 (MQ=255) agagTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATCTTTTAATGATGGAATAATTTg > 1:2153351/1‑128 (MQ=255) gagTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATATAGTGTACTAGGATCGCTTGCAAGTAACTTACACGCGCCTCGTATCTTTTAATGATGGAATAATTTgg > 1:355760/1‑128 (MQ=255) agTCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATTAAAAAATATAGAGTGTACTAGGATCGATTGACTGTAACTTACACGCGCCTCGTATCAATTATTGCTGGATTAATTTggg > 1:4318405/1‑128 (MQ=255) tCATCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTAGCTTTTAATGATGGAATATTTTGGGat > 2:1899900/1‑127 (MQ=255) atactcTATGTGG‑AAAAAAAAAATGAATATCATTAACGAGGCATAAATAAATATAGAGTGTACTAGGATCGCTTGACTGTAACTTACACGCGCCTCGTATCTTTTAATGATGGAATAATTTGGGAAtt < 2:1221986/123‑1 (MQ=255) aTCCGCTAGGTGG‑AAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATCTTTTAATGATGGAATAATTTGGGAAtt < 2:1662997/128‑1 (MQ=255) ccGCTAGGTGGAAAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATATAGTGTACTAGGATCGCTTGCATGTAACTTACACGCGCCTCGTATCTTTTAATTATGGATTAATTTGGTAtttt > 1:3833158/1‑128 (MQ=255) tcTAGGTTG‑AAAAAAAAAATGATAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATCTTTTAATGATGGAATAATTTGGGAATTTAct < 2:1840567/127‑1 (MQ=255) | CTTCGTTTATCTTGCCTGCTCATTTTTTAGTATATTCTTCGAAGAAATCACATTACTTTATATAATGTATAATTCATTATGTGATAATGCCAATCGCTAAG‑AAAAAAAAAGAGTCATCCGCTAGGTGGAAAAAAAAAAATGAAAATCATTACCGAGGCATAAAAAAATATAGAGTGTACTAGGATCGCTTGCCTGTAACTTACACGCGCCTCGTATCTTTTAATGATGGAATAATTTGGGAATTTACTCTGTGTT > CP016816/19385‑19639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |