BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 203895	518 (0.280)	288 (0.140) +TTT	90/214	27.6	33.6%	intergenic (+279/+179)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
*	?	CP016816	203896 =	573 (0.270)	288 (0.140) +TTT	90/214	27.6	33.6%	intergenic (+280/+178)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 941 total aligned reads displayed.

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAA  >  CP016816/203769‑204024

   aTTTTTTTTAATAAAAAAAATAAAAATTTTTAATTTAAAGCCATTTTTAAAAAATCATATGTTCTAGGCTTTTTATTAT‑ACTTATCAAAAATACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑ttt‑t                                                                                                                                    <  2:4567521/128‑1 (MQ=255)

      ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑ttt‑tttt                                                                                                                                 >  1:3885619/1‑128 (MQ=255)

      tttttaTTAAAAAAAAATAAAAATTTTTAATTTTATTCCTTTTGTATTAAAGCCTTTGTTCTAGGCTTTTTTTTAT‑AATTATAAAAATTAAAACGCTTTAAAA‑TTGTT‑TTTTTTTGG‑‑‑‑C‑TT‑G‑‑‑ttt‑tttt                                                                                                                                 <  1:4372835/128‑1 (MQ=255)

         tttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑ttt‑ttttttt                                                                                                                              >  2:3845248/1‑128 (MQ=255)

          ttATAAAAAAAAATAAAAATTTTTAAATTAAAGCCATTTGTAAAAAAGCCTTTGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGATTTCAAA‑GGGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑ttt‑tttttttt                                                                                                                             <  2:893654/128‑1 (MQ=255)

             ttaaaaaaaaaaaaaaTTTTT‑AATTAAATTAATTTTTTAAAAATTCTTTTTTTTTTGTTTTTTTTTAT‑ACTTTTTAAAATTTAAACGGTTTTAAATTTTTT‑TTTTTTTGG‑‑‑‑T‑TT‑G‑‑‑ttt‑ttttttttttt                                                                                                                          <  1:3080215/126‑1 (MQ=255)

             aaaaaaaaaaaaaaaTTTTTTAATTTAAATCCATTTTTAAAAAAGCCTATTTTCTATGCTTTTTATTAT‑AATTAAAAACATTAAAACGCTTTCAAA‑GTGTT‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑ttt‑ttttttttttt                                                                                                                          <  1:3161654/127‑1 (MQ=255)

              aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTACGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTAAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑tat‑ttttttttattt                                                                                                                         >  1:2770553/1‑128 (MQ=255)

               aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑ttt‑ttttttttttttt                                                                                                                        >  2:824686/1‑128 (MQ=255)

               aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGACTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTATG‑‑‑‑C‑TT‑G‑‑‑ttt‑ttttttttttttt                                                                                                                        >  2:2686787/1‑128 (MQ=255)

                  aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑ttt‑ttttttttttttttgt                                                                                                                     >  2:284734/1‑125 (MQ=255)

                  aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTAAAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑A‑TT‑G‑‑‑ttt‑tttttttttttttttg                                                                                                                     >  2:2080043/1‑125 (MQ=255)

                  aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑AATTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GA‑‑TTT‑TTTTTTTTTTTTT‑Gt                                                                                                                     >  2:2022559/1‑128 (MQ=255)

                      ataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGAA‑TTTTTTAGG‑‑‑‑A‑TT‑G‑‑‑TTT‑TTTTTTTTTTGTT‑TT‑‑aaaaa                                                                                                              >  1:4011956/1‑128 (MQ=255)

                       taaaaatTTTTAATTTAAATCCATTTGTAAAAAAGCCTTTTTTCTATGATTTTTATTTT‑ACATATAAACATTACAACGCTTTCAAA‑TTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑aaaaa                                                                                                              <  2:2535382/128‑1 (MQ=255)

                         aaaatTTTTAATTTAAATTCATTTTTAAAAAATATTTTTTTTTTTTTTTTTTATTAT‑AATTTAAAAAATTAAAACTTTTTAAAA‑TTTTA‑TTTTTTATG‑‑‑‑CTTT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATa                                                                                                            <  2:1296122/128‑1 (MQ=255)

                         aaaatTTTTAATTTAAATCCATTTTTAAAAAAGCCTATGTTCTATGCTTTTTATTAT‑AATTATAAAAATTAAAACTCTTTAAAA‑TTTTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATa                                                                                                            <  2:2630046/128‑1 (MQ=255)

                          aaatTTTTTTTTTTAATGAATTTGTAAAAAAGACTATTTTCTTTGATTTTTATTAT‑AATTATAAACATTACAACGCTTTAAAA‑TTGTT‑TTTTTTTGG‑‑‑‑G‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATaa                                                                                                           <  1:2141639/128‑1 (MQ=255)

                          aaatTTTTTATTTAAATGAATTTGTAAAAAAGCATATTTTTTAGGCTTTTTATTTTAAATTAT‑AACATTAAAACGCTTTCAAA‑GTTTA‑TTTTTTTGGGT‑‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATa                                                                                                            <  1:514904/128‑1 (MQ=255)

                            atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑taaaataaaa                                                                                                         >  1:3599645/1‑128 (MQ=255)

                            atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑TTA‑AAAAATaaaa                                                                                                         >  2:3894495/1‑128 (MQ=255)

                             tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑ataaaatttaag                                                                                                       >  1:2247103/1‑121 (MQ=255)

                              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATaaaatt                                                                                                       >  1:1593572/1‑126 (MQ=255)

                              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATATAAGt                                                                                                       >  1:2975879/1‑128 (MQ=255)

                              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAATGt                                                                                                       >  2:677145/1‑128 (MQ=255)

                              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTTAGT‑‑AAAAATAAAAGt                                                                                                       >  2:4508517/1‑128 (MQ=255)

                              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTAAAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑CTTT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATaaaatt                                                                                                       >  1:4091501/1‑126 (MQ=255)

                               tttattttAAAGACATTTTTAAAAAATCCTATGTTCTAGGCTTTTTTTTAT‑AATTATAAAAATTACAACGCTTTAAAA‑TTTTATTTTTTTGGG‑‑‑‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑a                                                                                                     <  2:402917/123‑1 (MQ=255)

                               tttCATTTAAATCCATTTTTAAAAAAGCCTATGTTATAGGCTTTTTATTAT‑AATTATAAAAATTACAACCCTTTCAAA‑GTTTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑a                                                                                                     <  2:1119640/128‑1 (MQ=255)

                                ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTCCAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑taaaataaaatgaaa                                                                                                    >  1:3410925/1‑123 (MQ=255)

                                  cATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATaaaatttattt                                                                                                  >  1:1133378/1‑121 (MQ=255)

                                      tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AATATTTg                                                                                              >  1:3533952/1‑128 (MQ=255)

                                       taatccATTTGTTAAAATGCCTATGTTTTTTGATTTTTATTAT‑ATTTATTTAAATTACAACGTTTTAAAT‑GTTTT‑TTTTTTTGG‑‑‑‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGa                                                                                            <  1:2440863/124‑1 (MQ=255)

                                       aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTTTTT‑GT‑‑TAAAATAAAAGT‑AATAATTg                                                                                              >  2:1801288/1‑128 (MQ=255)

                                       aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑AT‑‑AAATA‑AAAATT‑AATAtttttat                                                                                           >  2:2343763/1‑124 (MQ=255)

                                        aataaaTTTTTAAAAAATAATTTGTTCTAGGCTTTTTATTTT‑AATTATAAAAATTAAAACTATTTCAAA‑TTGTA‑TTTTTTTGG‑‑‑‑CTTT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGa                                                                                            <  2:634487/123‑1 (MQ=255)

                                        aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGT‑‑‑‑C‑TT‑G‑‑‑TTTATTTTTTTTTTTTT‑GT‑‑AAAAAAAAAAgataaatatgtc                                                                                             >  1:2311524/1‑117 (MQ=255)

                                         aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGT‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AATAttttaaa                                                                                           >  2:4446/1‑124 (MQ=255)

                                         aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AATATTTGGAt                                                                                           >  2:3924091/1‑128 (MQ=255)

                                          tccATTTGTAAAAAACACTAAGTTATTTGGTTTTTATTTT‑AATTATCAAAATTATAAAGCTTTTAAA‑TTGTA‑TTTTTTTGG‑‑‑‑CTTT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATc                                                                                          <  1:1453480/127‑1 (MQ=255)

                                           gcATTTGTAAAAAAGACTTTGTTCTTGGGTTTTTATTTT‑AGTATTTAACTTTACTACTCTTTAAAA‑GTGTT‑TTTTTTTGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCa                                                                                         <  2:1206139/127‑1 (MQ=255)

                                              ttttTAAAAAATCCTATTTTTTAGTGTTTTTATTAT‑AATAATAAAAATTTAAAAGCTTTAAAA‑TTTTT‑TTTTTTAGGTTTTT‑TT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCa                                                                                         <  1:2391884/128‑1 (MQ=255)

                                                  tAAAAAATTATATTTTGTAGGCTTTTTATTAT‑ACTTATCAAAATAACAACGCTTACAAA‑GTGTA‑TTTTTTATG‑‑‑‑CTTT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCaaaa                                                                                  <  2:3534924/128‑1 (MQ=255)

                                                  tAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCaaaa                                                                                  >  2:1531597/1‑128 (MQ=255)

                                                  tAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑AATTATCAACATTAAAACGCTTTCAAA‑GTTTA‑TTTTTTAGG‑‑‑‑G‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCaaaa                                                                                  <  1:3955540/128‑1 (MQ=255)

                                                   aaaaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TTGG‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑TAAAATAAAATT‑AATAATTGTTTCAACCAAAAc                                                                                 >  1:746852/1‑128 (MQ=255)

                                                   aaaaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AATATTTGGTTCACCCaaaa                                                                                  >  2:3044278/1‑128 (MQ=255)

                                                    aaaaaGCCTATGTTTAATGCTTTTTATTAT‑ATATATAAACATTACAACGCTTTTAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACt                                                                                <  2:3693478/128‑1 (MQ=255)

                                                     aaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAATGT‑TAGATTTGGAACGACCAAAACt                                                                                >  2:3980850/1‑128 (MQ=255)

                                                       aattcTATGTTTTATTCTTTTTATTAT‑ACTTATAAAAATTACAACTCTTTTAAA‑TTGTA‑TTTTTTTGG‑‑‑‑CTTT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACtata                                                                             <  2:3640971/124‑1 (MQ=255)

                                                        aGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑‑T‑‑AAAATTAAAATT‑AAGATTTGGTTCAACAAAAAatattaaa                                                                          >  2:3732279/1‑124 (MQ=255)

                                                         gacTATTTTCTAGGCTTTTTATTAT‑AATTATCAACATTACAACCCTTTAAAA‑GTTTA‑TTTTTTAGG‑‑‑‑C‑T‑‑‑‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCaaa                                                                       <  2:533822/126‑1 (MQ=255)

                                                           cTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GA‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAAAAAAATT‑AATATTTGGATAAAAAAAAACtataaaaa                                                                         >  2:3788503/1‑124 (MQ=255)

                                                            tATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAAGT‑AATATTTTTATAAACCAAAAATAAA‑Taaaa                                                                       >  1:3704379/1‑128 (MQ=255)

                                                                ttCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAATGT‑TAGATTTGGATCAACCAAACGTTTA‑Taaaaaaaa                                                                   >  1:1021592/1‑128 (MQ=255)

                                                                acatAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AATTTTTTGATCAAAAAAACATAAA‑TCataaaa                                                                    >  2:2168579/4‑128 (MQ=255)

                                                                  cTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AAGATTTGTATCACCCAAAAATATA‑TAAAAAAAAtt                                                                 >  1:4440918/1‑128 (MQ=255)

                                                                   tatggtttttttttt‑ATTTATAAAAATTAAAACTATTTTAAA‑TTTTA‑TTTTTTTGG‑‑‑‑G‑TT‑‑‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTaaa                                                              <  1:1969005/123‑1 (MQ=255)

                                                                   tAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAAGT‑ATGATTTGGTTAAACCAAAAATATA‑TAAAAAAAATTa                                                                >  1:3907270/1‑128 (MQ=255)

                                                                     tgtttttttttAA‑AATTTTAAAAATTAAAACGCTTTAAAATGTTTT‑TTTTTTGGT‑‑‑‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTaaa                                                              <  1:3822748/125‑1 (MQ=255)

                                                                        tttttATTAT‑AATTATAAAATTTAAAACTCTTTCAAA‑TTGTA‑TTTTTTTTG‑‑‑‑T‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTaaaaaa                                                           <  1:4169166/128‑1 (MQ=255)

                                                                         ttttATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑TAAAAAAAAATT‑TAAATTTTGATACACCAAAACTAAA‑TAAAAAAAATTaaaaaaa                                                          >  2:3127494/1‑128 (MQ=255)

                                                                              ttat‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAAAAAAAATAAAAATTTGTTAAAACCAAAAAATTA‑AAAAAAAAATTTAAAAAAAtttt                                                     >  1:584881/1‑125 (MQ=255)

                                                                               tat‑aCTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AATATTTGTAAAAACAAAAACTATa‑taaaaaaaaataaaaaaaaaattt                                                    >  2:169090/1‑123 (MQ=255)

                                                                                 ttaattATAAATATTACAAAGGTTTTAAA‑TTTTT‑TTTTTTAGGT‑‑‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAAtagttt                                                   <  1:4515669/124‑1 (MQ=255)

                                                                                 t‑aCTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAATT‑AAGATTTGGATAAAACAAAACAAAT‑TAAAAAAAATTAAAAAAAAaattttt                                                  >  2:1028056/1‑127 (MQ=255)

                                                                                      tATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAAAAAAAAT‑AATATTTGGATCAACCAAAACAATA‑AAAAAAAAATTAAAAAAAAtatgttagtta                                              >  1:1557154/1‑127 (MQ=255)

                                                                                      tATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAATT‑AATATTTGGTTAAACAAAAAAAATT‑TCAAAAAAATTAAAAAAAAtattttattat                                              >  2:417269/1‑124 (MQ=255)

                                                                                       aTCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GTTTTTT‑TTTTTTTTTTTTT‑TT‑‑AAAAAAAAAAAT‑AAAATTTTGAAAAAAAAAAAAAATA‑AAAAAAAAATTATAAAAAAaatttttttt                                               >  1:3662796/1‑124 (MQ=255)

                                                                                         cAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAAAAAAAAT‑AAAATTTGGTTAAACAAAAACTATA‑TCAAAAAAATTAAAAAAAAtatattattttatt                                           >  2:2464461/1‑116 (MQ=255)

                                                                                         cAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AAGATTTGGATAAACCAAAAAAATA‑AAAAAAAAATTAAAAAAAATATTTTATTTTAGtt                                          >  1:4310039/1‑128 (MQ=255)

                                                                                            cATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑TTA‑AAAAATAAAATT‑AATTTTTGGATACGCCAAAAATATA‑TAAAAAAAATTAAAAAAAATATTTTTGTTGAtttta                                        >  2:1459510/1‑127 (MQ=255)

                                                                                             aTTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AATATTTGTAAAAACAAAAAATATA‑TAAAAAAAATTAAAAAAATAAGTTTAGTTGAtttta                                        >  2:3567124/1‑127 (MQ=255)

                                                                                             aTTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AAAATTTGGATCAACCAAAAATTAA‑AAAAAAAAATTAAAAAAAAaattttatttatttttca                                       >  1:2550390/1‑120 (MQ=255)

                                                                                                aCAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAAAAAAAGT‑AATATTTGTTTAAAACAAAAATAAA‑TAAAAAAAATTAAAAAAAATATTTTTTTTGATTTTAAAAt                                    >  2:1924271/1‑128 (MQ=255)

                                                                                                aCAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTT‑‑‑T‑‑AAAAATAAAATT‑AAGATTTGGTTAAACAAAAAATATA‑AAAAAAAATTTAAAAAAAATAATTTTATTTATTTTGAAATCTg                                 >  1:1819740/1‑128 (MQ=255)

                                                                                                   aCGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AAAATTTGGAAAAAAAAAAACTATT‑TAAAAAAAATTAAAAAAAATATTTTATTTTAGTTTCAAAtaga                                 >  1:1354397/1‑125 (MQ=255)

                                                                                                    cGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAAAAAAATT‑AAGATTTGGATAAACAAAAAATTTA‑TCAAAAAAATTAAAAAAAATTTTTTATTTGATTTTaaaaaatca                                >  2:2982800/1‑123 (MQ=255)

                                                                                                     gCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AAGATTTTGGACAACCAAAAATATT‑TAAAAAAAATTAAAAAAAATTATTTTATGTAGTTTCAAATCAGc                                >  1:4242554/1‑128 (MQ=255)

                                                                                                     gCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAATT‑AAGATTTGGATCAACCAAAACTATT‑TAAAAAAAATTAATAAAAAATGTTTAGTTGATTTTCAAATCTGCa                               >  2:4354094/1‑128 (MQ=255)

                                                                                                       tttCAAA‑GTTTA‑TTTTTTTGG‑‑‑‑T‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatat                            <  1:3477388/128‑1 (MQ=255)

                                                                                                       tttCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAAAAAAATT‑AAATTTTGGATAAACAAAAAAAAAA‑ACAAAAAAATTAAAAAAAAAAATTTATTTTATTTTCaaaagaaaata                             >  1:1255888/1‑120 (MQ=255)

                                                                                                        ttCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAAAAAAATT‑AAAATTTGGATCAACCAAAAATATA‑TAAAAAAATTTAAAAAAAATATTTTATTTTATTTTAAAATATTCataa                            >  2:1384280/1‑127 (MQ=255)

                                                                                                        ttCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAAAAAAAGT‑AAGATTTGTGT‑AAACAAAAAAATATTAAAAAAAATTAAAAAAAATAGTTTAGTAGAATTACAAATATACatat                            >  2:3238157/1‑128 (MQ=255)

                                                                                                          cAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAAGT‑AAGATTTTGATCAACAAAAAATATA‑TAAAAAAAATTAAAAAAAATATTTTATTTGATTTTCAAAtaggaaaata                           >  2:4128710/1‑119 (MQ=255)

                                                                                                           aaa‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAAT‑AAGATTTTGATACACCAAAACAAAA‑AAAAAAAAATTAAAAAATATTTTTTTTTTTAATTACAAATCtcaattttt                          >  2:2255179/1‑120 (MQ=255)

                                                                                                                tgtA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑TTTAAAAAATAAAAGT‑AATATTTGGATAAACCAAAACTATA‑TAAAAAAAATTAAAAAAAATAGTTTATTTGAGTTTCAAATCTGCATATATAGTa                      >  2:3425316/1‑128 (MQ=255)

                                                                                                                            gg‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑TT‑‑AAAAATAAAATT‑AAAATTTGGATAAACCAAAAATATT‑TAAAAAAAATTAAAAAAAAAATTTTATTTTTTTTTAAAATATGCAATTAATTTAAAAAGGAATTTAt         >  1:933048/1‑128 (MQ=255)

                                                                                                                                tttttttttttttt‑ttttttttttttt‑GT‑‑AAAAATAAAAGT‑AAGATTTTGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGaa              <  2:1592965/117‑1 (MQ=255)

                                                                                                                                tttttatttttttt‑ttttttttttttt‑GT‑‑AAAATTAAATTT‑TATTTTTTTTTTAAACTAATCTTTT‑TCATAAATATT‑ATAAAAATATTTTAGTTGAGTTTCAAATCTTCATTTATAGTACAAATGAAt             <  1:3790195/117‑1 (MQ=255)

                                                                                                                                  tgtttgtttttt‑ttttttttttttt‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt            <  1:4066661/119‑1 (MQ=255)

                                                                                                                                   ttttttttttt‑ttttttttttttt‑GT‑‑TAAAATAAAATT‑ATGATTTGGATCAACTAAAAATATA‑TCAAAAAAATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt           <  1:3301683/120‑1 (MQ=255)

                                                                                                                                   tttgttgtttt‑ttttttttttttt‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt           <  1:4560638/120‑1 (MQ=255)

                                                                                                                                   tttattttttt‑ttttttttttttt‑GT‑‑AAAAATAATAGT‑AAGATTTGGATCAAACAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt           <  2:278808/120‑1 (MQ=255)

                                                                                                                                    tttttttttt‑ttttttttttttt‑tt‑‑AAAAATAAAAGT‑AAGATTTTGATCAACAAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa          <  1:1669050/121‑1 (MQ=255)

                                                                                                                                    tttttttttt‑ttttttttttttt‑GT‑‑AAAAATTATAGT‑TAGATTTGGATCAAACAAAATTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa          <  1:2830898/121‑1 (MQ=255)

                                                                                                                                     ttttttttt‑ttttttttttttt‑GT‑‑ATATATAAAAGT‑ATTATTTTGATATAAAAAAAATATA‑TAAAAATAATTAAAAAAAATATTTTATTTTATTTTAAAATCTGCATATATAGTACAAAGGAATTTAt         <  2:3341675/122‑1 (MQ=255)

                                                                                                                                     ttttttttt‑ttttttttttttt‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt         <  2:2398240/122‑1 (MQ=255)

                                                                                                                                        gttttt‑ttttttttttttt‑tt‑‑AAAAATAAAATT‑AATATTTGGATCAAACAAAAATATA‑TAAAAAAAATTAAAAAAAATATTTTTTTTTATTTTAAAATATGCATTTAAAGTAAAAAGTAAttttttta      >  2:3485900/4‑123 (MQ=255)

                                                                                                                                          tttt‑ttttttttttttt‑GT‑‑AAAAATAAAAGT‑TAGATTTGGATCATCAAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg    <  2:4312621/127‑1 (MQ=255)

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGG‑‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTTTT‑GT‑‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAA  >  CP016816/203769‑204024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.