BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	311155 =	347 (0.380)	167 (0.220)	106/210	13.8	38.7%	intergenic (‑78/‑236)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
*	?	CP016816	= 311148	238 (0.310)	167 (0.220)	106/210	13.8	38.7%	intergenic (‑71/‑243)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 480 total aligned reads displayed.

GTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTA  >  CP016816/311028‑311283

 ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatata                                                                                                                                      >  1:39897/1‑128 (MQ=255)

 ttGTAATAACTAAACCAAATGAACTTAAAAATGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTAGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatata                                                                                                                                      >  2:1059132/1‑128 (MQ=255)

  tGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatat                                                                                                                                     >  2:1367839/1‑128 (MQ=255)

  tGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatat                                                                                                                                     <  1:322605/128‑1 (MQ=255)

   gTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatata                                                                                                                                    <  2:1583980/128‑1 (MQ=255)

   gTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAAAACTTTTTACATACGATTCAAAACATATATAACATACATA‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑aatatatata                                                                                                                                    >  2:1532491/1‑128 (MQ=255)

     aataaCTAATACAAATGAACTTAAAATTGTAATTAAATTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatata                                                                                                                                  <  1:1849339/128‑1 (MQ=255)

        aaCTAAACCAAATGAACTTAAAAATGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatat                                                                                                                               <  2:326088/128‑1 (MQ=255)

          cTAATAAAAATGAAATTTAAATTGTAATTAAATTTTTAATTTTACACACCCATTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatat                                                                                                                             <  1:1980041/128‑1 (MQ=255)

           tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatata                                                                                                                            >  1:1713984/1‑128 (MQ=255)

           tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAAAAAAATACTTGTTACATACGATTCAAAACATATATAACATACAAT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑taaatatatatatatata                                                                                                                            >  1:455787/1‑128 (MQ=255)

            aataaaaaTGAACTTAAAATTGTAATTAACTTTTTAATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatataa                                                                                                                           <  2:1397031/123‑2 (MQ=255)

            aaTCCAAATGAACTTAAAATTTTAATTAACTTTTTCATTTTACAAAAACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATAAATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatat                                                                                                                           <  1:1407803/128‑1 (MQ=255)

            aaTACAAATTAAATTAAAATTGTAATTAACTTTTTCATTTTACACACACATTATTAAAAAATAAAATAATTTTTAAATAATATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatat                                                                                                                           <  2:284445/128‑1 (MQ=255)

              tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatatat                                                                                                                         <  1:1660492/128‑1 (MQ=255)

              tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatatag                                                                                                                         >  1:137449/1‑127 (MQ=255)

               ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatatata                                                                                                                        >  2:49994/1‑128 (MQ=255)

               ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatataat                                                                                                                        <  1:1431348/128‑3 (MQ=255)

                cAAATTAAATTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTAATAAAAAATAAAAAACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatataatgaatgta                                                                                                                       <  2:34199/128‑10 (MQ=255)

                  aaTTAACTTAAAATTGTAATTAACTTTTTCATTTTAAACAACCAATATTAAAAAATAAAATAATTTTTAAATACTATTAAAAAAATATATAACATAAATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatatatatat                                                                                                                     <  1:1461048/128‑1 (MQ=255)

                  aaTTAACTTAAAATTGTAATTAAATTTTTAATTATAGACACCCCTTATTAAAAAATAAAATACTTGTTACATAAGATTAAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatatatatat                                                                                                                     <  1:733721/128‑1 (MQ=255)

                       aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatatataatgcaata                                                                                                                >  2:894344/1‑120 (MQ=255)

                             aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATA‑AT‑‑AT‑‑‑TCA‑ATATGTa                                                                                                   >  1:258486/1‑128 (MQ=255)

                              aTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatatatatatatataaatcaat                                                                                                         >  2:1963950/1‑117 (MQ=255)

                              aTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatatatatatatataaataaat                                                                                                         >  1:711762/1‑117 (MQ=255)

                               atGTAATTAAATTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAAAATATATAACATACATT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATg                                                                                                     <  1:1204121/127‑1 (MQ=255)

                                       aaCTTTTTAATATTACACACCCAATATTAAAAAATAAAATACTTGTTACATACTCTTCAAAACATATATAACATACAAT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGaa                                                                                             <  1:826827/128‑1 (MQ=255)

                                        aatttatCATTTTACAAAAAAATTATTAAAAAATATAATACTTTTTACATAATATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGta                                                                                    <  2:840556/126‑1 (MQ=255)

                                        aCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑tatatatatatatatatatatatat                                                                                                                     <  2:1177686/106‑1 (MQ=255)

                                        aCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGtata                                                                                  >  1:1496491/1‑128 (MQ=255)

                                          tttttAATATTAAAAACACCTTATTAAAAAATAAAATAATTGTTAAATAATATTCAAAAAATATATAATATACATT‑‑‑‑‑A‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAat                                                                                          <  2:808298/128‑1 (MQ=255)

                                              taaTTTTACACACAACTTATTAAAAAATAAAATAATTGTTACATAAGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAg                                                                              <  1:754076/126‑1 (MQ=255)

                                              tCATTTTACACACACCTTATTAAAAAATAAAATACTTTTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAg                                                                              <  1:486647/128‑1 (MQ=255)

                                                tttttATACACAACTAATTAAAAAATAAAATAATTTTTAAATAATATTAAAAAAATATATAACATATATT‑‑‑‑‑A‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGtata                                                                                  <  2:561207/127‑1 (MQ=25)

                                                  tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATTTAAATTAAAATATGTtata                                                                                  >  1:1074348/1‑128 (MQ=255)

                                                   ttAAACACAACTTATTAAAAAATAAAATAATTGTTAAATAATATTAAAAAAATATATAAAATAAATT‑‑‑‑‑C‑A‑‑TTATA‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGtat                                                                                   <  1:569296/128‑1 (MQ=255)

                                                    tatacactagatatttAAAAATATAATATTTTTTTTATAATATTTAAAAAATATATAACATACATT‑‑‑‑‑A‑A‑‑TTATA‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGtata                                                                                  <  2:455787/117‑1 (MQ=16)

                                                    tACACACACCTTATTAAAAAATAAAATAATTTTTACATAATATTCAAAACAAATATAAAATAAATTAAATAT‑A‑‑TA‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGta                                                                                    <  1:1345548/128‑1 (MQ=255)

                                                     agacacacCTTATTAAAAAATAAAATACTTGTTAAATAAGATTCAAAACATATATAACATAAATT‑‑‑‑‑C‑A‑‑TTATATATATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGtat                                                                                   <  1:1968213/126‑1 (MQ=255)

                                                        cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GAA‑ATATCTAAAAGAAAATATTCTATAATAgaa                                                                            >  2:275739/1‑126 (MQ=38)

                                                         acCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                                   <  2:116217/128‑1 (MQ=255)

                                                            acTTATTAAAAAATAAAATACTTGTTAAATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                                <  2:1948570/127‑1 (MQ=255)

                                                            acTTATTAAAAAATAAAATAATTTTTAAATAATATTAAAAAAATATATATAATAAATT‑‑‑‑‑A‑A‑‑TTATA‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAAc                                                                          <  1:683550/127‑1 (MQ=19)

                                                             cTTATTAAAAAATAAAATAATTTTTAAATAAGATTCAAAACATATATAACATACATT‑‑‑‑‑A‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAg                                                               <  1:1222720/128‑1 (MQ=255)

                                                              ttattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAAGCGTATATAAAGt                                                              >  2:544594/1‑128 (MQ=255)

                                                              ttattaAAAAATAAAATACTTGTTAAATAAGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                              <  2:1626059/128‑1 (MQ=255)

                                                              ttataaTAAAATATAAAATTTTTTATATAATATTAAAAAAATATATAAAATAAATT‑‑‑‑‑CAA‑‑TA‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGtt                                                                      <  1:434541/128‑1 (MQ=255)

                                                               tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATTGTATAATAGCAAACTTTTATAAAGTa                                                             >  2:1334273/1‑128 (MQ=255)

                                                                attaAAAAATAAAATAATTGTTACATAATATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaa                                                            <  2:70992/128‑1 (MQ=255)

                                                                 ttaAAAAATAAAATACTTTTTACATAAGATTAAAAAAATATATAAGATAAATT‑‑‑‑‑A‑A‑‑TTATA‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGttt                                                                     <  1:1003182/128‑1 (MQ=25)

                                                                  taaaatataaaataCTTGTTACATAAGATTCAAAACATATATAACATAAATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑TATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                              <  2:198647/128‑1 (MQ=255)

                                                                    aaaaaTAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑TAA‑ATATATAAATTAAAATATGTTATAATAGCAACCTTTTAaaaatt                                                              >  1:1881570/1‑126 (MQ=38)

                                                                      aaaaaaaataATTTTTACATAAGATTCAAAAAATATATAAAATAAATT‑‑‑‑‑A‑A‑‑TTATA‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                                <  2:1838795/128‑1 (MQ=25)

                                                                       aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATAT‑CAAA‑AT‑‑‑‑‑A‑AT‑‑‑TATATAAAAATATGATATAATAGACACAGTTTATATAATAAAAAtata                                                     >  2:1464630/1‑128 (MQ=255)

                                                                        ataaaataCTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATATATATATTAATAA‑ATATATAAATTAAAATATTTTATAATAGAAACCTTTTATaaaat                                                              >  1:864743/1‑126 (MQ=255)

                                                                         taaaataCTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCTACCTTTTATAAAGTAAAAAAATAGt                                                   >  1:525354/1‑128 (MQ=255)

                                                                         taaaataATTGTTAAATAAGATTTAAAACATATATAAAATACATT‑‑‑‑‑‑‑‑‑‑T‑‑‑‑‑‑T‑‑‑‑‑T‑TATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaa                                                 <  1:1139081/128‑1 (MQ=255)

                                                                            aattCTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTGAAAAAATAGTAAata                                              <  1:117701/128‑1 (MQ=255)

                                                                             ataCTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑TTATA‑‑TATATATATATATATATATATATATA‑AT‑‑‑TAA‑ATATTTAAATTAAAATATTTTATAATATCAAAAGTTTATAAAATaaaaa                                                         >  2:1508630/1‑128 (MQ=25)

                                                                              taCTTGTTATATACTATTCAAAACATATATATCATACATT‑‑‑‑‑C‑A‑‑TTATA‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaaa                                                        <  2:6674/128‑1 (MQ=255)

                                                                              taCTTGTTACATATTATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                              <  1:597482/128‑1 (MQ=255)

                                                                              taCTTGTTACATACGATTCAAAAAATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                                <  1:1095298/128‑1 (MQ=255)

                                                                                attGTTAAATATGATTCTAAACATATATAAAATAGATT‑‑‑‑‑A‑A‑‑T‑‑‑‑‑‑‑‑TATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                                <  2:1689552/127‑1 (MQ=255)

                                                                                 tttttACATATTATTAAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtac                                           <  2:1089471/125‑1 (MQ=255)

                                                                                 ttGTTACATACTATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATA‑AT‑TA‑‑‑‑‑‑‑‑A‑ATATGTAAATGAAAAAATGGTATAATAGCAACAGTTTATAAAGTAAAAAAAAATTAAAtataa                                           >  1:116708/1‑127 (MQ=255)

                                                                                 ttGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATAT‑‑‑‑‑‑‑T‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtac                                           >  1:1615840/1‑128 (MQ=255)

                                                                                  tGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑TATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATTTAAATGAAAATATGGTATAATAGAAACCGTTTATAAAGTAAAAAAATATTAAata                                              >  2:167307/1‑128 (MQ=255)

                                                                                   gTTATATAATATTCAAAACATATATAAGATAAATA‑‑‑‑‑G‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaa                                                 <  1:378681/128‑1 (MQ=255)

                                                                                   gTTACATAAGATTTAAAAAATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑TATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAATTAGTAAatat                                             <  1:1945696/128‑1 (MQ=255)

                                                                                    ttaaataataTTAAAAACATATATAAAATACATT‑‑‑‑‑A‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                              <  1:1532491/119‑1 (MQ=39)

                                                                                     tataTAAGATTGAAAAGATATATAACAATAATT‑‑‑‑‑T‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAAAAGCAACCGTTTATAAAGTAAAAAAATAGTAAat                                               <  2:1229793/125‑1 (MQ=255)

                                                                                     tACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATTGTATAATAGAAACAGTTTATAAAGAAAAAAAATATTAAATATactact                                       >  2:960758/1‑128 (MQ=255)

                                                                                      aCATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAt                                    <  2:1496491/128‑1 (MQ=255)

                                                                                       cATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATA‑‑‑ATA‑‑‑‑‑‑‑CA‑ATATTTAAAAGAAAATATGATATAATATCAACAGTTTATAAATTAAAAAAATAGAAAATAAACTAGTTa                                     >  2:1288876/1‑128 (MQ=255)

                                                                                           cGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGTTATAATAGCAACATTTTATAAAGTAAAAAAATATTAAATATACTACTTATTTa                                 >  2:1312483/1‑128 (MQ=255)

                                                                                              ttCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACtt                                      >  1:58402/1‑128 (MQ=255)

                                                                                               taaaaaaaTATATAAAATAAATT‑‑‑‑‑C‑A‑‑TTATA‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAataagtagta                                       <  2:1204593/126‑8 (MQ=255)

                                                                                               tCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑TTATA‑‑TATATATATATATATATATATATATA‑AT‑‑‑TCA‑ATATTTAAATTAAAATATGTTATAATATCAAAATTTTATAAATTAAAAAAATAGTAAATATactact                                       >  2:1866769/1‑128 (MQ=255)

                                                                                               tCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATCAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAATATAGTAAATATACTAATTATTTACtaa                             >  1:1296801/1‑128 (MQ=255)

                                                                                                cAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACta                              <  1:1597768/128‑1 (MQ=255)

                                                                                                 aaaaCATATATAACATACATT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAtt                                   >  2:39157/1‑128 (MQ=255)

                                                                                                 aaaaCATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTa                                 <  2:1781442/128‑1 (MQ=255)

                                                                                                   aaCATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATATATATAA‑‑‑AAATATATATAAATAAAAATATATTATAATATAAAAAAATTATAAAAAATAAAAATAAAAAATataataaatatata                                 >  2:589952/1‑120 (MQ=255)

                                                                                                   aaCATATATAACATACATT‑‑‑‑‑A‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACt                               <  2:1881570/128‑1 (MQ=255)

                                                                                                       tatataAAATATATT‑‑‑‑‑T‑ATTT‑‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCTACCGTTTTTAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                             <  1:1561801/128‑1 (MQ=255)

                                                                                                        atataACATACATT‑‑‑‑‑C‑A‑‑TTATA‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATTTAAATTAAAATATTTTATAATAGACACCGTTTATAAAGTAAAAAAATATTAAATATAAAACTTTTTTAAta                              >  1:1799598/1‑128 (MQ=255)

                                                                                                        atataACATACATT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AA‑‑‑GAA‑ATATATAAATTAAAATATTTTAAAATATAAACATTATATAAATTAAAAAAATAATAAATAAACTAATTaataaataaa                            >  2:764842/1‑119 (MQ=255)

                                                                                                          ataACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATTGTATAATATCAACCGTTTATAAAGTAAAAAAATAATAAATATACTACTTATTTACAAATaaaa                        >  1:1766502/1‑128 (MQ=255)

                                                                                                           taACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATA‑‑‑A‑AT‑‑‑‑CT‑ATATTTAAAAAAAAATATTATATAATAGCAACATTATATAAAAAAAAAAAATATTAAATAAAAAAATTATATAATTATAAAAtattt                   >  1:937774/1‑124 (MQ=255)

                                                                                                              catacatT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGTTATAATATCAACAGTTTATAAAGTAAAAAAATATTAAATATAATAATTATTTACTAATAAAATc                      >  1:801573/1‑128 (MQ=255)

                                                                                                              catacatT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGTTATAATAGCAACAGTTTATAAATTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATc                      >  1:852381/1‑128 (MQ=255)

                                                                                                               atacatT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑TAA‑ATATGTAAATGAAAATATGGTATAATAGAAACCTTATATAAAGTAAAAAAATATTAAATATACTACTTATTTACTAATAAAAtat                     >  1:1832094/1‑126 (MQ=255)

                                                                                                               atacatT‑‑‑‑‑C‑A‑‑TTA‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATATAAATGAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt                     >  2:1911175/1‑128 (MQ=255)

                                                                                                                         tgc‑a‑‑t‑‑‑‑‑‑tATATATATATATATATATATATATA‑AT‑‑‑GAA‑ATATTTAAATTAAAATATGTTATAATAGAAACAGTTTATAAAGTAAAAAAATAGTAAATATAATAATTATTTAATAAAAAAATCTATTttta              >  1:1054294/3‑128 (MQ=37)

                                                                                                                             atattcattatatatatatatatatatatatatata‑AA‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAt                   <  1:1321789/118‑1 (MQ=39)

                                                                                                                             a‑‑t‑‑‑‑‑‑tATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTtttattt           <  2:1713984/128‑1 (MQ=255)

                                                                                                                             a‑‑t‑‑‑‑‑‑tATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTtttattt           <  1:1246270/128‑1 (MQ=255)

                                                                                                                                    tacattcattatatatatatatatatata‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTtttatt            >  2:794354/10‑128 (MQ=255)

                                                                                                                                        ttatatatatatatatatatatata‑AT‑‑‑GCA‑ATATGTAAATTAAAATATTGTATAATAGAAACCGTATATAAATTAAAAAAATAGTAAATATAATACTTATTTAATAATAAAATATA‑TTTTATTTaaaa       >  1:98319/2‑128 (MQ=255)

                                                                                                                                        ttaattatatatatatatatatata‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGTTTTAATAGCAAAAGTTTATTAAGTAAAAAAATAGTAAATATACTTCTTAATTACTAATAAAATCTATTTTTATTTaaa        <  2:1806735/123‑1 (MQ=255)

GTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATT‑‑‑‑‑C‑A‑‑T‑‑‑‑‑‑TATATATATATATATATATATATATA‑AT‑‑‑GCA‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTA  >  CP016816/311028‑311283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.