Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4810CA34.2% 605.8 / 84.2 569intergenic (+259/‑416)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (168/174);  new base A (45/133);  total (233/336)
Fisher's exact test for biased strand distribution p-value = 1.23e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 647 total aligned reads displayed.

AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATAT  >  CP016816/202354‑202605
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agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATACTCTTTATC‑TATTTTTTTA‑TTTTTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                                >  1:1975759/1‑128 (MQ=255)
agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                                <  1:6638626/128‑1 (MQ=255)
  tGAAGTTAGTGTAAATAATATAGTAAAGGTTAATTAAAATACCATAAAGTTAATAATTCTTATAATGTAGTTCCTCGTGATC‑TATTTTTATA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATccc                                                                                                                              <  2:3633204/128‑1 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAATAAAAAAAAAAACAATcc                                                                                                                               <  2:1330656/128‑1 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATA‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATccc                                                                                                                              <  2:3458873/128‑1 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTAAATAAATCTTATAATGTAGATACACAAGATC‑TATTTTATTA‑TTAGTTTATCT‑T‑CACAAAA‑AAAAAAAAAACAATcac                                                                                                                              >  2:2255311/1‑126 (MQ=255)
   gaattaattttAAATAATATATTTAATTTAAATTAAAATACCATAAAATAAATAAATAATATAATGTACATCCTCGTGATC‑TATTATTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATcccc                                                                                                                             <  1:4631631/118‑1 (MQ=255)
    atcttATTGTAAATAATAGATTTAATGTTAATTAAAATACCATATAATTAATAATTCTTATAATGTATATGCTCGTGATA‑TATTTTTTTA‑TTTGTTTATCT‑T‑CTCAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                            <  2:3204068/125‑1 (MQ=255)
     aGTTATTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                           <  2:2771357/128‑1 (MQ=255)
     aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATC‑TATTTTTTTA‑TTTATTTATCT‑T‑CACAAAT‑AAAAAAAAAAAAATAACCtt                                                                                                                           >  1:5876855/1‑128 (MQ=255)
     aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTACATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                           <  1:4360838/128‑1 (MQ=255)
      gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATC‑TATATTTTTA‑TTTTTTTATCT‑T‑CACAAAT‑AAAAAAAAAAAAATCCCCtta                                                                                                                          >  2:6511929/1‑127 (MQ=255)
      gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTATTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATACACtta                                                                                                                          >  1:5746820/1‑127 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATATTTTAA‑TTTAATTAACT‑T‑CACAAAT‑AAAAAAAAAACAAAcccaaaaa                                                                                                                         >  2:1795169/1‑123 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATC‑TATTTTTTTA‑TTTATTTATCT‑T‑CACAAATAAAAAAAAAAACAAACCCCtaa                                                                                                                          >  2:596766/1‑126 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCCttaa                                                                                                                         <  1:5969813/128‑3 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATccaattaa                                                                                                                         >  2:5115678/1‑122 (MQ=255)
        tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAAATATTATAATGTAGATACTCTTGATC‑TATTTTTTTA‑TTTGTTTATCA‑T‑CACAAAT‑AAAAAAAAAACAATcaacataaa                                                                                                                        >  1:6233646/1‑120 (MQ=255)
          gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAAAACCCttaaaaa                                                                                                                      >  2:5602424/1‑123 (MQ=255)
             tAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCCttaaaaatta                                                                                                                   >  2:5926935/1‑120 (MQ=255)
              aaaTAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCACCttaaaaattaa                                                                                                                  >  1:5580722/1‑119 (MQ=255)
                ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑Ttaaaa‑aata‑aaa                                                                                                            >  1:5642522/1‑128 (MQ=255)
                 taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCCtt‑‑‑aaa‑aata‑aaaaa                                                                                                          >  2:5633567/1‑128 (MQ=255)
                 taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGAACCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCACCtt‑‑‑aaa‑aata‑aaaaa                                                                                                          >  2:5294958/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTTATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTTTTTATCT‑T‑CACAAAT‑AAAATAAAAACAATCCCCTATaaaattatatcgta                                                                                                            >  1:1741397/1‑118 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTa‑aaaaaaa                                                                                                        >  2:5764708/1‑128 (MQ=255)
                       agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAA‑AATt‑aaaaaaaaaaa                                                                                                    >  2:5702372/1‑128 (MQ=255)
                       agTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCATCTTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑‑AAAAAAAAACAATCCAC‑‑TTAAAA‑ATTa‑aaaaaaaaaaa                                                                                                    >  1:5018339/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAATAAAAAAAAAAACAAACCCC‑‑TTAAAA‑AATa‑aaaaaaaaaaa                                                                                                    >  2:762688/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATATATATA‑TTAGATTATCT‑A‑CACAAAT‑AAAAAAAAAACAATAAACTT‑‑‑AAA‑AATa‑aaaaaaaaaaaaa                                                                                                  >  1:2357986/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TAATTTTTTA‑TTTGATTATCT‑T‑CACAAAA‑AAAAAAAAAACAAAACCCATaaaaaa‑aaaa‑aaaaaaaaaa                                                                                                     >  2:1463618/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑AACAAAT‑AAAAAAAAAACAATACAC‑‑TTAAAA‑ATTa‑aaaaaaaaaaaa                                                                                                   >  2:458524/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTa‑aaaaaaaaaaaaa                                                                                                  >  1:5839526/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATAATCGTGATC‑TATTTTTTTA‑TTTTTTTATCT‑T‑AAAAAAT‑AAAAAAAAAAAAAT‑‑‑AAAATAAAA‑AATt‑aaaaaaaaaaaaaaa                                                                                                >  1:4827751/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTATATC‑TATTATAATA‑TAAGATTAACT‑A‑CACAAAT‑AAAAAAAAAACAAAACCCATaaaaaa‑aaaa‑aaaaaaaaaaaa                                                                                                   >  2:3914047/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCAACTT‑‑‑AAA‑AATa‑aaaaaaaaaaaaaaa                                                                                                >  1:2754513/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATACACAT‑‑‑AAA‑AATa‑aaaaaaaaaaaaaaa                                                                                                >  2:1889932/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTATATCCTCGAAATC‑TAATTTTTAA‑TATTTTAATCT‑T‑CACAAAA‑AAAAAAAAAAAAAACCACTAaaaaaa‑aaaa‑aaaaaaaaaaaa                                                                                                   >  2:6731972/1‑128 (MQ=255)
                            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATC‑TATTTTATTA‑TATATATATCT‑T‑CAAAAAT‑AAAAAAAAAAAAAAAAAATT‑‑‑AAA‑AATa‑aaaaaaaaaaaaaaaa                                                                                               >  2:4160546/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATACTCGTGATC‑TATTTTTTTA‑TTTGTTTATAT‑T‑CACAAAT‑AAAAAAAAAACAAAACC‑‑‑AAAAAA‑AATa‑aaaaaaaaaaaaaaaaa                                                                                              >  2:3065034/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATACAC‑‑TTAAAA‑ATTa‑aaaaaaaaaaaaaaaa                                                                                               >  1:6532827/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑‑AAAAAAAAACAAACCCC‑‑ATAAAA‑ATTa‑aaaaaaaaaaaaaaaaa                                                                                              >  2:2059072/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TAATTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATAAC‑‑ATTAAAA‑ATTa‑aaaaaaaaaaaaaaaa                                                                                               >  1:5206451/1‑128 (MQ=255)
                             cgtaaataaaAATAACATAAAATTAATAATTTTTATAATGTTTATCCTCGTTATC‑TATTTTTTTA‑TTTTTTTATCT‑T‑AAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATTa‑aaaaaaaaaaaaaaaa                                                                                               <  1:6058455/124‑1 (MQ=255)
                              ttttaataaAAAACAATAAACTTAATAATTCTTATTATTTTTTTCCTTGGGTTT‑TATTTTTTTA‑TTTTTTTATAT‑T‑AAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATTa‑aaaaaaaaaaaaaaaaa                                                                                              <  2:856044/122‑1 (MQ=255)
                               ttaattaaAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTTATC‑TAATTTTTTA‑TTTTTTTATCT‑T‑CACAAAT‑AAAAAAAAAAAAAACAAC‑‑‑TAAAA‑AATa‑aaaaaaaaaaaaaaaaaaa                                                                                            >  1:6764707/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAAA‑AATa‑aaaaaaaaaaaaaaaaaaaa                                                                                           >  2:1614854/1‑128 (MQ=255)
                                   ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCATCTTTATC‑TATTTTTTTA‑TTTTATTATCA‑T‑CACAAAT‑AAAAAAAAAAAAATCAC‑‑AATAAAA‑ATTa‑aaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:1221390/1‑126 (MQ=255)
                                   ttaaAATACCATAAACTTAATAATTCTTATAAAGTATATACTCTTGATA‑TATTTTATTA‑TTTTTATATAT‑T‑AAAAAAT‑AAAAAAAAAACAAT‑‑AAAATAAAAA‑ATTa‑aaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:981057/1‑126 (MQ=255)
                                        aaaacaaaaaaTTAATAATTTTTAAAATTTATATACAAGTTTTT‑TTTTTTTTTT‑TTTTTTTATAT‑T‑AAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AATT‑AAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                   <  1:5519145/121‑1 (MQ=255)
                                         ttacATAAACTTAAAAATTATTATTATTTTGAAACTATTTTTC‑TAATTTTTTA‑TTTTTTTATAT‑T‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                   <  1:2378977/125‑1 (MQ=255)
                                         aaaaaTAAAATTAATAATTCTTATAAAGTTTAACCTCGTGATA‑AATTTTTTTA‑ATTGTTTAATT‑T‑AACAAAT‑AAAAAAAAAAAAAACCCC‑ATAAAAA‑ATAA‑AAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                    <  2:6207671/124‑1 (MQ=255)
                                          aacttaaaaataaaaaTTCTTTAAATTTTTATCCTCGTTTTC‑TTTTTTTTTA‑TTTTTTTATAT‑T‑AAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAA‑AATT‑AAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                 <  2:6610823/118‑1 (MQ=255)
                                           aaaTAAAATTAATAAATTTTTAAATTTATATCATCGTTTTA‑TATTTTTTTA‑TTTTTTTATAA‑T‑CAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                 <  1:5394703/126‑1 (MQ=255)
                                            aaTAAAATTAATAATTATTAAAAATTAGATCCTAGTTATA‑TATTTTTTTA‑TTTTTTTATCT‑T‑CAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                <  1:6417351/127‑1 (MQ=255)
                                              taaaaatattaatTTTTTAAATTTAGATCCTAGTGATA‑TATTTTTTTT‑TTTGTTTTTTT‑T‑AAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  2:4732467/119‑1 (MQ=255)
                                               ataaataataaTTATTAAAATTTATCTACTCGTTATA‑TATTTTTTTA‑TTTTTTTTTAT‑T‑AAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AATT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                            <  2:5215104/123‑1 (MQ=255)
                                                aaCTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTAA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACATTCACC‑‑TTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACAAatacaaaaaac                                                                            >  2:4469993/1‑124 (MQ=255)
                                                aaCTAAAAAATTATTATGATGAAAAACATCGTGAAA‑AATTTTTTAA‑TTTTTTAATAT‑T‑AACAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                            <  1:5435667/128‑1 (MQ=255)
                                                 acataataaTTCTTATAATTGTTCTCCTCGTGATCATATTTTTTT‑‑TTTTTTTTTTT‑T‑ACCAAAA‑AAAATAAAAAACATGCCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  2:6797993/125‑1 (MQ=255)
                                                 aaataataaTTATAATAATTTAAATACTCTGTATC‑TATTTTTTTA‑TTTTTTTATAA‑T‑CACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  1:1481389/125‑1 (MQ=255)
                                                   taaataatTATTATAATTTATATACCTGTTTTT‑TATTTTTTTT‑TTTTTTTTTAT‑A‑TAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                         <  2:5788868/126‑1 (MQ=255)
                                                    taataaTTAATATAATTTATATAATTTTTATA‑TTTTTTTTTT‑TTTTTTTATAT‑T‑AAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                       <  1:134580/128‑1 (MQ=255)
                                                      ataatTATTAAAATTTAATTAATCGTTATA‑TTTTTTTTTA‑TTTTTTTATAT‑A‑AACAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                      <  1:2983872/128‑1 (MQ=255)
                                                           tCTTAAAATTTATAACCTCCTGATA‑TATTTTTTAT‑ATTGTTTATCT‑T‑AACAAAA‑AAAAAAAAAAAAATCCCC‑ATAAAAA‑TTAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                  <  1:2165136/128‑1 (MQ=255)
                                                                 aatttacaaacTCGTTATA‑TATTTATTAT‑TTTTTTAATCT‑T‑AACAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta                                                          <  1:4483898/118‑1 (MQ=255)
                                                                  aagtacttCCTCTTGATA‑TATTTTTTTA‑TTTTTTTAAAT‑T‑AAAAAAA‑AAAAAAAAAAAAATACCCTTT‑‑AAA‑ATTT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta                                                          <  2:6363336/121‑1 (MQ=255)
                                                                    tttaaaacTCGTGTTC‑TATTTTTTTA‑TTTTTTGATATAA‑CAAAAAA‑AAAAAAAAAACAA‑CCCC‑‑‑TAAAA‑AATATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                        <  2:5334014/121‑1 (MQ=255)
                                                                    gtatataaacGTGATC‑TTTTTTTTTA‑TTTGTTTTTAT‑T‑TACAAAT‑AAAAAAAAAAAAATACCC‑‑ATAAAA‑AATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                        <  1:5294958/119‑1 (MQ=255)
                                                                     ttaatacTCGTTATC‑TTTTTTTTTT‑ATTTTTTATAT‑T‑TACAAAA‑AAAAAAAAAACAAACACCTTTTAATT‑TA‑A‑AAATATAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTAAAATTCCCtatt                                                        <  1:3909445/122‑1 (MQ=255)
                                                                      acatacacGTTATC‑TATTTTTTTT‑ATTGTTTATAT‑T‑AAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                      <  1:5698135/121‑1 (MQ=255)
                                                                       ttaacTCGTTATA‑TATTTTTTTT‑TTTTTTTAAAT‑T‑AAAAAAA‑AAAAAAAAAAAAATACCCATAAAAAATAAAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                        <  1:6131983/124‑1 (MQ=255)
                                                                       tataatcttGATA‑TATTTTTTTA‑TTTTTTAAAAT‑TAAAAAAAA‑AAAAAAAAAACAAACACC‑‑TTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                      <  1:699811/120‑1 (MQ=255)
                                                                         tttctatttttatATTTTTTTT‑TTTTTTTTTTT‑T‑TAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAA‑ATAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                     <  2:6676834/116‑1 (MQ=255)
                                                                           actatttttatattttttta‑ttttttTATTT‑T‑AAAAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                  <  1:3249868/118‑1 (MQ=255)
                                                                            tCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACAAAAAAAAAACACATTTTTGTAAATTTCACTATTTTAcgaaa                                                >  2:6296551/1‑124 (MQ=255)
                                                                            atctttatatattttttta‑ttttttTTATA‑T‑AACAAAA‑AAAAAAAAAAAAATCCC‑‑ATAAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                 <  1:3494286/119‑1 (MQ=255)
                                                                               tttttatattttttta‑ttttttTTTAT‑T‑AAAAAAA‑AAAAAAAAAACAATACCCTT‑‑‑AAA‑AATT‑ATAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  1:1795169/122‑1 (MQ=255)
                                                                                 ttC‑TATTTTTTTA‑TTTTTTTATAT‑T‑AAAAAAT‑AAAAAAAAAAAAATACCC‑TTAAAAA‑TAAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                            <  1:6182650/127‑1 (MQ=255)
                                                                                 gtttaatttttttatttttttTATAT‑T‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  2:5457250/123‑1 (MQ=255)
                                                                                 gtattATTTTTTTT‑TTTTTATAACT‑T‑AAAAAAT‑AAAAAAAAAAAAAAACCC‑‑ATAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                            <  1:3678588/124‑1 (MQ=255)
                                                                                     aattttttta‑tttttttATAA‑T‑AAAAAAA‑AAAAAAAAAACAAT‑‑CAATTT‑AAA‑AAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                     <  1:3060960/127‑1 (MQ=255)
                                                                                     aaTTTTTTTT‑TTTTTTAATAA‑T‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                        <  1:3615035/127‑1 (MQ=255)
                                                                                      aTTTTTTTA‑TTTTTATATAT‑T‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                       <  1:310917/128‑1 (MQ=255)
                                                                                        ttttttA‑TTTTTTTAAAA‑T‑AACAAAT‑AAAAAAAAAAAAATACAC‑TTAAAAA‑TTAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                      <  1:1053686/128‑1 (MQ=255)
                                                                                         tttttt‑ttttttTATTT‑T‑AAAAAAT‑AAAAAAAAAAAAATACCCATT‑‑AAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                    <  1:2512056/128‑1 (MQ=255)
                                                                                              ttttttttTATAT‑T‑AAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                               <  2:246375/126‑1 (MQ=255)
                                                                                              a‑TTTTTTTTTTT‑T‑TAAAAAA‑AAAAAAAAAAAAATAACC‑TATAAAA‑ATAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                <  1:6004979/128‑1 (MQ=255)
                                                                                                    tttATAT‑T‑AAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatat                          <  1:1918938/128‑1 (MQ=255)
                                                                                                      tttttttttaaaaaT‑AAAAAAAAAATATTTCCC‑TTTAAAA‑TTAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  1:5340534/117‑1 (MQ=255)
                                                                                                      ttaattataaaaaaa‑aaaaaaaaaaaaATACCC‑ATAAAAA‑TTAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  1:3749735/117‑1 (MQ=255)
                                                                                                       tttaaataaaaaaa‑aaaaaaaaaaCAATACCCTT‑‑‑AAA‑AATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                        <  2:799837/118‑1 (MQ=255)
                                                                                                        tttttataaaaaa‑aaaaaaaaaaaaaaaaCCATATAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                         <  1:1617914/119‑1 (MQ=255)
                                                                                                            tttcaaaaa‑aaaaaaaaaaaaaaaaCCAATTAAAA‑TA‑A‑AAAAAAAAAAAATAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                     <  1:2255311/123‑1 (MQ=255)
                                                                                                            attaaaaaT‑AAAAAAAAAAAAAT‑‑TCTATTTAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAACAACAAACTCTATTTCTTAAAATTCCCTATTATAACACATTTTATTTTTAAAATAAGATATTGACat                    <  2:6142834/123‑1 (MQ=255)
                                                                                                              taaaaaa‑aaaaaaaaaaaaaaACCCTTAAAAAA‑TAAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                    <  2:6020508/125‑1 (MQ=255)
                                                                                                               aaaaaT‑AAAAAAAAAAAAAAACCC‑TTAAAAA‑TTAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                  <  1:5908006/126‑1 (MQ=255)
                                                                                                                   aaaaaaaaaaaaaaaATACC‑‑ATTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata              <  1:814379/125‑1 (MQ=255)
                                                                                                                    aaaaaaaaaaaaaaATCCC‑‑‑TTATAA‑ATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata            <  1:4160546/126‑1 (MQ=255)
                                                                                                                             aaaCAATCCCC‑‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAA‑AAAAAACAAAATCAATTACTTAAAATACCATATTATAACAAAATTATATTTTAAAATAATATATTAAAATAATATATATAAAatata   >  1:6345556/1‑128 (MQ=255)
                                                                                                                                    |                                                                                                                              
AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTA‑TTTGTTTATCT‑T‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATAT  >  CP016816/202354‑202605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑