BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP016816	420,163	2 bp→TT	intergenic (‑446/+396)	JCVSYN2_01895 ← / ← JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,163	0	A	T	99.5%	8338.0 / NA	2686	intergenic (‑446/+397)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (7/7); new base T (1440/1220); total (1448/1238)
Fisher's exact test for biased strand distribution p-value = 7.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP016816	420,164	0	A	T	98.6%	7418.4 / NA	2666	intergenic (‑447/+396)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (4/33); new base T (1435/1194); total (1439/1227)
Fisher's exact test for biased strand distribution p-value = 4.21e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2695 total aligned reads displayed.

CATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATG  >  CP016816/420041‑420289

||

cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATa                                                                                                                             <  1:3326723/128‑1 (MQ=255)

  ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                           >  2:6322330/1‑128 (MQ=255)

  ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                           <  2:4962444/128‑1 (MQ=255)

  ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                           >  1:3096573/1‑128 (MQ=255)

  ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATAAGTTGATATATTAGAAAACTACTAGAACTTTTTTAAAAAATATTTAATTTAAATAAc                                                                                                                           >  2:232702/1‑128 (MQ=255)

   tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACt                                                                                                                          <  1:4571745/128‑1 (MQ=255)

   tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACt                                                                                                                          >  1:626128/1‑128 (MQ=255)

     atACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGa                                                                                                                        <  2:2974261/128‑1 (MQ=255)

       aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAat                                                                                                                      >  1:2334715/1‑128 (MQ=255)

           ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAattatt                                                                                                                  >  1:2818282/1‑128 (MQ=255)

             aGTCTCATAAATCTAATTTTCTAAAATTATTTTATAATTTAAAATAATAATACTTTTATTAGTTGATATATTATAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTAtttt                                                                                                                <  2:3110355/128‑1 (MQ=255)

               tctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTc                                                                                                              >  2:1136957/1‑128 (MQ=255)

                ctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCa                                                                                                             >  1:3546428/1‑128 (MQ=255)

                 tcATTAATATAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                            <  2:1526414/128‑1 (MQ=255)

                 tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                            <  2:178764/128‑1 (MQ=255)

                 tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                            <  2:5165688/128‑1 (MQ=255)

                 tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                            >  2:772094/1‑128 (MQ=255)

                   agaaaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                          >  1:6597640/3‑128 (MQ=255)

                   aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATa                                                                                                                             <  1:5070705/109‑1 (MQ=255)

                   aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                          >  1:789410/1‑128 (MQ=255)

                   aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                          >  2:4283297/1‑128 (MQ=255)

                   aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                          <  2:5492363/128‑1 (MQ=255)

                   aTAAATCTAAGTTTATAAACTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                          <  2:5251795/128‑1 (MQ=255)

                    tAAATCTAAGATTCTAAAATTATTATATCATATAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAtt                                                                                                         <  2:1674257/128‑1 (MQ=255)

                      aaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                            <  1:345670/123‑1 (MQ=255)

                       aTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTCAAATTGtt                                                                                                      >  1:216662/1‑128 (MQ=255)

                          ttaGTTTCTAAAATTATTTTATCATTTAAAAAAATAATTCTTTTATTAGTTGATATATTAGAAAAGTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaaa                                                                                                   <  1:67279/126‑1 (MQ=255)

                          tAAGTTTCTAAAATTATTTTATCATTTAAAAAATTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaaa                                                                                                   <  1:533460/128‑1 (MQ=255)

                          tAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaaa                                                                                                   <  1:1578078/128‑1 (MQ=255)

                          tAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaaa                                                                                                   <  2:391800/128‑1 (MQ=255)

                            aGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAatt                                                                                                 <  1:1450947/128‑1 (MQ=255)

                             gtatCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAatta                                                                                                <  2:6191223/125‑1 (MQ=255)

                             gTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAATGAATTATTTTACAAATTTTTAAatta                                                                                                >  1:5456010/1‑128 (MQ=255)

                              gttCTAAAATTATTTTATAATTTATAAAAATAATACTTTTATTAGTTGATATATTAGATAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattat                                                                                               <  2:6714610/127‑1 (MQ=255)

                               ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattatt                                                                                              <  1:2254537/128‑1 (MQ=255)

                               ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattatt                                                                                              >  1:2726575/1‑128 (MQ=255)

                                  tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                           <  1:1229379/128‑1 (MQ=255)

                                    aaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaa                                                                                         <  2:4096230/128‑1 (MQ=255)

                                     aaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaaa                                                                                        <  1:2062421/128‑1 (MQ=255)

                                      attattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAAt                                                                                       >  1:4000028/1‑128 (MQ=255)

                                      attattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAAt                                                                                       >  2:3656213/1‑128 (MQ=255)

                                      attattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAAt                                                                                       <  1:5849879/128‑1 (MQ=255)

                                      aatattTAATCATTAAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAAt                                                                                       <  2:3362663/126‑1 (MQ=255)

                                         attTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCAt                                                                                    >  1:5563467/1‑128 (MQ=255)

                                            ttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                                 >  2:5078433/1‑128 (MQ=255)

                                            ttATCATTTAAAAAAATAATACTTATATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                                 <  2:4438690/128‑1 (MQ=255)

                                             tATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATc                                                                                <  1:639281/128‑1 (MQ=255)

                                              aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAtat                                                                               >  2:2806744/1‑126 (MQ=255)

                                              aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                               >  2:5591411/1‑128 (MQ=255)

                                               tCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTa                                                                              >  1:4801376/1‑128 (MQ=255)

                                                 aTTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAtt                                                                            <  1:494625/128‑1 (MQ=255)

                                                   ttAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTaa                                                                          <  1:5240901/128‑1 (MQ=255)

                                                     aaaaaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATc                                                                        <  2:2589017/128‑1 (MQ=255)

                                                      aaaaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCa                                                                       >  2:1866226/1‑128 (MQ=255)

                                                      aaaaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCa                                                                       <  2:5376917/128‑1 (MQ=255)

                                                         taataatACTTTTATTAGTTGATATATTAGATAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCTAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑tt                                                                   <  1:6168325/127‑1 (MQ=255)

                                                         aaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑tt                                                                   <  1:3667078/128‑1 (MQ=255)

                                                         aaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATATTAATAACTGAATTATTTTTCAAATTGTTAATTTATTTTCAAATCATTATCTATTAATCTA‑tt                                                                   >  2:6029509/1‑128 (MQ=255)

                                                          tataataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑ttt                                                                  <  1:196816/127‑1 (MQ=255)

                                                           ataataCTTTTCTTCGTGCACATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTGTAATTTTAATGACTGACTTATTTTTCAAATTGTTAAATTATTTTAAAATCATTATCTATTAATCAA‑tttt                                                                 <  2:3495759/128‑1 (MQ=255)

                                                           ataataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCAATTAATCAA‑tttt                                                                 >  2:3244411/1‑128 (MQ=255)

                                                             aataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTaa                                                               <  2:6449904/128‑2 (MQ=255)

                                                               taCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGc                                                             >  1:320348/1‑128 (MQ=255)

                                                               aacatttATTAGTTTATATATTAGAATACTACTAGTATTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTAAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGc                                                             <  1:1332332/124‑1 (MQ=255)

                                                                aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATTCt                                                            >  1:6486242/1‑128 (MQ=255)

                                                                aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCt                                                            >  1:1682492/1‑128 (MQ=255)

                                                                aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCt                                                            >  2:5696308/1‑128 (MQ=255)

                                                                aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCt                                                            >  2:1342140/1‑128 (MQ=255)

                                                                  ttttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCg                                                          >  1:5159932/1‑128 (MQ=255)

                                                                  ttttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAAGTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCg                                                          >  2:3780715/1‑128 (MQ=255)

                                                                   tttATTAGTTTATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTCAAATTGTTAAATTATTTTAAAATCATTATCTATTAATCAA‑TTTTATGATctt                                                         >  1:6057115/1‑126 (MQ=255)

                                                                     ttatattttttatatTATTAAAATAATATCACTTTTTTAAAAAATTTTTAATTTTAATAAATGTATTATTTTTAAAATTGTTTATTTATTTTAAAATTATTATATATTAATAAA‑TTTTATGCTCG‑ttt                                                      <  2:5805403/118‑1 (MQ=255)

                                                                     tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑ttt                                                      >  2:592/1‑128 (MQ=255)

                                                                      atttttttatttattatTAAACTACTATAACTTTTTTAAAAAATTTTTAATTTTAATAAATTAATTATTTTTTAAATTTTTTAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑tttt                                                     <  1:4688035/117‑1 (MQ=255)

                                                                         attttatatatTATAAAAATAATAGCAATTTTTTAAAAAATTTTTAATTTTAAAAACTTAATTATTTTTAAAATTTTTAAATTATTTTCAAATAATTATCTATTAATCAA‑TTTTATGCTCG‑ttttttt                                                  <  1:300207/123‑1 (MQ=255)

                                                                                  atTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑tttttttttttttttt                                         >  1:5652176/1‑128 (MQ=255)

                                                                                     aGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATc                                                                                <  1:1896624/88‑1 (MQ=255)

                                                                                           ctactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑ttttttttttttttttttttttaaa                                >  2:6822764/1‑120 (MQ=255)

                                                                                           ctactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTTTaaaaaa                                >  2:6598234/1‑127 (MQ=255)

                                                                                           ataatataaattttttAAAAAATTTTAAATTTTAAAAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAA‑TTTTATTCTCG‑‑TTTTTTTTTTTTTTTTACAAAAata                               <  1:3868654/118‑1 (MQ=255)

                                                                                            tactaTCAATTTTTTAAAAAATTTTTAATTTTAATAAAAGAATTTTTTTTAAAATTTTTAAATTATTTTCAAATCATAATCTATTAATCAA‑TTTTATGCGCG‑TTTTTTTTTTTTTTTTTACAAAAata                               <  1:4493170/128‑1 (MQ=255)

                                                                                              ctaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAAtata                             >  1:917726/1‑128 (MQ=255)

                                                                                               tattaattttttAAAAAATTTTTAATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTTTTTTTAAATTATTATTTATTAATAAA‑TTTTATTTTTG‑‑TTTTTTTTTTTTTTTTACAAAAATATAat                           <  2:216662/122‑1 (MQ=255)

                                                                                               tatcaattttttTAAAAATTTTTAATTTTAATAAATTAATTTTTTTTAAAATTGTTTAATTTTTTTAAAATAATTATATATTAATAAA‑TTTTATTCTCT‑TTTTTTTTTTTTTTTTTACAAAAATATaa                            <  1:2552205/122‑1 (MQ=255)

                                                                                               atccACTTTTTTAAAAAATTTTTAATTTTAAAAACTGAATTATTTTTAAAATTTTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATTCTCG‑TTTTTTTTTTTTTTTTTACAAAAATATaa                            <  2:844767/125‑1 (MQ=255)

                                                                                                aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAATATAat                           >  1:2449894/1‑128 (MQ=255)

                                                                                                 ttaaatttttAAAAAAATTTTAATTTTTATAAATTTATTTTTTTTTAAATTTTTTAATTTTTTTAAAAAAATTAATTAATAATAAATTTTTTTGCCGT‑TTTTTTTTTTTTTTTTTACAAAAATATAat                           <  1:5960404/123‑1 (MQ=255)

                                                                                                 tattttttttAAAAATTTTTAAATTTTAAAAATTTATTTTTTTTAAAAATTATAAAATT‑TTTTAAAATTAATATAATATAATAAA‑ATTTTTTCTCG‑TTTTTTTTTTTTTTTTTACAAAAATATAattt                         <  1:1791472/124‑1 (MQ=255)

                                                                                                 gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaa                                                                                         <  2:4606300/67‑1 (MQ=255)

                                                                                                 gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑‑‑TTTTTTTTTTTTTTTACAAAAATATAattta                        >  1:5742096/1‑128 (MQ=255)

                                                                                                  cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCGTTTTTTTTTTTTTTTTTTAAAAAAATATAatt                          >  1:408513/1‑128 (MQ=255)

                                                                                                  cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAtaataaata                         >  1:3766326/1‑125 (MQ=255)

                                                                                                  cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTAAAAAAATAAAattt                         >  1:1000714/1‑128 (MQ=255)

                                                                                                  cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑TTTTTTTTTTTTTTTTTAAAAAAATATTattta                        >  2:1983312/1‑128 (MQ=255)

                                                                                                     ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTTTAAAAAAATaaaattta                      >  1:707813/1‑122 (MQ=255)

                                                                                                     ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATAAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTAAAATAAAAAAattatat                      >  1:1103401/1‑124 (MQ=255)

                                                                                                        tttAAAAAATTTTTTATTTTAATAAATTTATTTTTTTTTATATTTTTAAATTTTTTTTAATTATTTATTTTTTAATATA‑TTTTTT‑‑TTT‑TTTTTTTTTTTTTTTTTAAAAAAATATAATTTATTTGAtt                 <  2:2470774/128‑1 (MQ=255)

                                                                                                           aaaaaaTTTTTAATTTTAATTAATTTATTTTTTTTAAAATTTTTAATTTTTTTTAAAATTATTATATTTTAATAAA‑TTTTAT‑‑TTT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTaaa              <  2:4815199/128‑1 (MQ=255)

                                                                                                              aaaTTTTTAATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTTTTTTCAAATAATTATATATTAATCAA‑TTTTATGCTCG‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAAca            <  1:4215935/128‑2 (MQ=255)

                                                                                                               aaTTTTTAATTTTAATAAATTAATTATTTTTAAATTTTTTAAATTATTTTTAAATAATTATTTATTAATAAA‑TTTTTTTATCT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACg            <  1:4388071/128‑1 (MQ=255)

||

CATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTCG‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATG  >  CP016816/420041‑420289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`