BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 34945	1548 (0.690)	685 (0.270) +AAA	111/216	15.2	28.7%	intergenic (+49/+117)	JCVSYN2_00105/JCVSYN2_00110	ABC transporter permease/cell division protein FtsH
*	?	CP016816	34946 =	1720 (0.670)	685 (0.270) +AAA	111/216	15.2	28.7%	intergenic (+50/+116)	JCVSYN2_00105/JCVSYN2_00110	ABC transporter permease/cell division protein FtsH
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 2532 total aligned reads displayed.

TTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTTT  >  CP016816/34819‑35073

tttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATTCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑ATTTGTTTGTTTCTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑a                                                                                                                                    >  1:2769793/1‑128 (MQ=255)

           aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTTAAGTTGATGAATAATAAAATATTAAACAAAATACA‑TTTTGTTTGTTATTTTTGTT‑T‑ACTA‑TT‑‑G‑‑‑a‑aaaaaaaaaaa                                                                                                                        >  1:95637/1‑128 (MQ=255)

           aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑a‑aaaaaaaaaaa                                                                                                                        >  1:4732610/1‑128 (MQ=255)

           aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑a‑aaaaaaaaaaa                                                                                                                        >  1:4870470/1‑128 (MQ=255)

            tGAGTTTCAACAAAAATAGTAAGAAATGCTGAACCAAGTACAATTCTAATTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTTTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑T‑‑‑a‑aaaaaaaaaaa‑a                                                                                                                      >  2:2027696/1‑128 (MQ=255)

              attttAAAAAAAAATATTAAAAAATGCTTAACCAATTAAAATTTTAATTTAATTTTATTAAAAAAAAAAAATTAAAACAAAAAAA‑TTGTTTTTGGTTTTTTTATT‑T‑ACAA‑TT‑‑T‑‑‑a‑aaaaaaaaaaa‑aaa                                                                                                                    <  1:5217952/126‑1 (MQ=255)

              aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑a‑taaaaaaaaaa‑aaa                                                                                                                    >  1:1814060/1‑128 (MQ=255)

               gTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑a‑aaaaaaaaaaa‑aaaa                                                                                                                   >  1:5026486/1‑127 (MQ=255)

               gTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑a‑aaaaaaaaaaa‑aaaa                                                                                                                   >  2:623088/1‑127 (MQ=255)

                   caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑Aaa‑taaaa                                                                                                              >  1:1187845/1‑126 (MQ=255)

                       aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAa‑aaataaagt                                                                                                          >  1:5140753/1‑124 (MQ=255)

                       aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAa‑aaaaataaa                                                                                                          >  1:5493176/1‑127 (MQ=255)

                        aaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTTTTTGTTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAa‑taataaaaat                                                                                                         >  2:2252692/1‑126 (MQ=255)

                        aaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTATTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAT‑AAA‑TAATATAAtt                                                                                                         >  1:434266/1‑128 (MQ=255)

                            gattAAGAAATGCTGAACCATGTAAAATGCTAATGTAAGTTTAAGAATAATAAAAGATTAAACCAAAAACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCa                                                                                                     <  1:3999320/125‑1 (MQ=255)

                              ttaataaATGCTGAACAAATAAAAATTCTAAGTTAAGTTTATTAATAAAAAAAAATTAAACCAAATAAA‑TTGTTTTTGGTTTTTTTATT‑T‑AATATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCAt                                                                                                    <  2:328558/127‑1 (MQ=255)

                                   aaaTGCTGAACCAAGTAAAAAGCTAAGTGAAGTTTATTAATAAAAAAACATTAAACCAAATACA‑TAGTCTTTGTTTTTTTAATT‑T‑ACTA‑TT‑‑T‑‑‑A‑AAAAAAAAAAA‑AAa‑aaaaaaaatatatgaaaaaaa                                                                                              >  2:2900266/1‑116 (MQ=255)

                                     attcTGAAACAATTACAATTTTAATTTATTTTTATTAAAAATAAAAGATTAAAAAAAATAAA‑TTGTGTTTGTTTTTTTTATT‑T‑AATATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATaa                                                                                             <  1:1120149/125‑1 (MQ=255)

                                     aTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTTTGTTTGGTTTTTTTATT‑C‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAAttttaaaaaaaaaaa                                                                                            >  2:409084/1‑116 (MQ=255)

                                     aTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑AAAAATAAtttaaaaaaaaaaa                                                                                             >  2:3611986/1‑117 (MQ=255)

                                     aTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAATTAATATAATTTCCATACTATaa                                                                                             >  2:1905954/1‑128 (MQ=255)

                                       tgagAACCAATTAAAATTGTAATTTTATTTTATTAAAAAAAAAATATTAAACCAAAAACA‑TTTTTTTTGGTTTTTTTTTT‑T‑AAAATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATaaaa                                                                                           <  1:1877278/125‑1 (MQ=255)

                                           aaCCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑AAATATAATTTTAATACTATaaaaaaat                                                                                       >  1:2157875/1‑126 (MQ=255)

                                               aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAAAAAAAATTGAATAAAATAAAAAATtttttt                                                                                  >  2:2356841/1‑128 (MQ=255)

                                               aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTAGT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑GAATATAATTTGCTAACTA‑ATAAAATtttttt                                                                                  >  1:678157/1‑128 (MQ=255)

                                                 gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGAATAATAAAAAAAATTTATTTTc                                                                                >  1:3131462/1‑128 (MQ=255)

                                                 gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑‑AATATAAATTTAAAAATATAAAAAAATttttttaa                                                                               >  2:5282319/1‑126 (MQ=255)

                                                 gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATAAAATTTTCATAAAATAAAAAAttttttttaa                                                                               >  1:1402764/1‑126 (MQ=255)

                                                    cAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTTAAAAAAATTGTTTTTCaaa                                                                             >  2:4523679/1‑128 (MQ=255)

                                                     aaTGCTAATTTAATTTTATTAATAATAAAATATTAAAACAAATACA‑TTTTGTTTGGTTTTTTTATT‑T‑AATA‑TTTAA‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCaa                                                                              <  1:3357600/128‑1 (MQ=255)

                                                      aTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑AAATAAAATTTAAAAAAAAAAAAAAATTTTTTTTaaaaa                                                                            >  1:2642862/1‑127 (MQ=255)

                                                       tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGAATAATAAAAAAAATTTTTTTAAAAATa                                                                           >  2:4847189/1‑128 (MQ=255)

                                                       tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑AAATATAATTTTCATAAAAAAAAAAATTTTTTTTaaaaaa                                                                           >  2:3417370/1‑126 (MQ=255)

                                                         cTAAGTGAAGTTTATTATAAATAAAAGATTAAACCAAATAAA‑TTGTGTTTGGTTTTTTTATT‑T‑AAAATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAg                                                                         <  1:1686430/128‑1 (MQ=255)

                                                         cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑AAAAAAAATTTACATAATAAATAAAATTCTTTTTCAAATAAg                                                                         >  2:3520027/1‑128 (MQ=255)

                                                           aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GAA‑A‑AAAAAAAAAAA‑AAA‑AAATATAATTTGAATAATATAAAAAATT‑TTTTTTAAATaaatt                                                                       >  2:2443083/1‑125 (MQ=255)

                                                              tttatttGATTAATAATAAAATTTTAAACAAAATATA‑TTTTTTTTTTTTTTTTTATT‑T‑AATATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTc                                                                    <  1:588066/123‑1 (MQ=255)

                                                                aaGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GAA‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTTCAAACTATAAAAAATTTTTTTTAAAATAAatataaa                                                                   >  1:2470669/1‑125 (MQ=255)

                                                                aaGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAAAATAATTTAAATAATAAAAAAAATTATTTTTAAAAAAATTAtaaaa                                                                  >  2:138973/1‑124 (MQ=255)

                                                                  gTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑‑AAAATAATTTAAAAAAAAAAAAAAATTTTTTATAAAAAAAATaaaaattata                                                              >  2:3990009/1‑119 (MQ=255)

                                                                    ttattaataatAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑AATATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGt                                                              <  1:4487513/123‑1 (MQ=255)

                                                                     gatgaATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑AAATATAATTTACATAATATAAAAAATTTTTTTTAAAATAAGTAttaatgatta                                                             >  2:5406986/1‑120 (MQ=255)

                                                                      attaatattaaaatattaaAATAAATAAT‑TTTTTTTTTTTTTTTTTTTT‑T‑AATA‑TTTAA‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTa                                                             <  1:3226678/125‑1 (MQ=255)

                                                                      attaataatAAAATATAAAAAAAAATACA‑TTTTTTTTTGTTTTTTTATT‑T‑ATTA‑TT‑‑T‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaaa                                                           <  1:4080199/125‑1 (MQ=255)

                                                                      atgaATAATAAAAGATTGAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTTTTTTTAAAATAattattaataataaa                                                            >  1:765994/1‑119 (MQ=255)

                                                                       ttaaaaaaaaaaTATTAAAACAAATAAA‑TTTTTTTTTTTTTTTTTATT‑T‑AAAATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaaa                                                           <  1:1594851/120‑1 (MQ=255)

                                                                       tgaATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATTAATGAGTaaa                                                           >  1:1954105/1‑128 (MQ=255)

                                                                        gaATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GAA‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGAATACTATAAAAAATTTTTTTTCAAATAATTATTAATGATTaaa                                                           >  2:4419656/1‑128 (MQ=255)

                                                                          ataataAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTACAAATAAGTATTCAGTAGTAAATTTa                                                       >  1:4929863/1‑128 (MQ=255)

                                                                           taataaAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAATAATTCAAGATTAAATTTa                                                       >  1:1278355/1‑128 (MQ=255)

                                                                            aataaAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATAAATTAAAAAATTTTTTTTAAAATAATTATTCAGTAGTAATATTaa                                                      >  1:3792711/1‑128 (MQ=255)

                                                                             ataaAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATAATATAAAAAATTGTTTTTAAAATAAGTATTCAGGAGTAAATTTaaa                                                     >  1:4278462/1‑128 (MQ=255)

                                                                                aaaGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GAA‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATAATATAAAAAATTTTTTTTCAAATAAGTATTCAGGAGTAAATTTaaaaa                                                   >  1:4206046/1‑128 (MQ=255)

                                                                                   gATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑AAAAATAATTTTCAAAAATTAAAAAATTTTTTTTAAAAAAAATTTTAATTAATAAAATTaaaaaaaaaa                                              >  2:4600745/1‑124 (MQ=255)

                                                                                     ttAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GAA‑A‑AAAAAAAAAAA‑AAA‑AAATATAATATTAATAATATAAAAAATTTTTTTTAAAATAATTATTAATAAATAAATTTAAAAAACaaa                                              >  2:3093398/1‑128 (MQ=255)

                                                                                     ttAAACCAAATAAA‑TTTTGTTTGGTTTTTTTATT‑T‑AATA‑TT‑‑T‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAaga                                            <  1:2241351/128‑1 (MQ=255)

                                                                                     ttAAAACAATTAAA‑TTTTTGTTGGTTTTTTTATT‑T‑AATT‑TTTAA‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCaa                                              <  1:2836459/128‑1 (MQ=255)

                                                                                     aaaaaCCAAACACA‑ATGTATTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑‑‑AAAAAAAAAAA‑AAA‑TAATATAATTTTCATACTATAAAAAATTTTTTTTAAAAAAAGTATTCAGTAGTAAATTTAAAAAACCaaaat                                           >  2:1491442/3‑125 (MQ=255)

                                                                                       aaaCCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAAAATAATTTGAATAAAAAAAAAAATTTTTTTTCAAATAATTATTC‑TTAATTAATTTAAAAAACaaaaattt                                         >  2:2556444/1‑123 (MQ=255)

                                                                                        aaCCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAATAAAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATAAATGATTAAATTTAAAAAACaaataat                                          >  2:4768587/1‑124 (MQ=255)

                                                                                        aaCCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAAAATAATTTGCAAAAAATAAAAAATTTTTTTTAAAATAATATTTCAGGATTAAATTTAAAAAACaaaaattt                                         >  2:2816752/1‑123 (MQ=255)

                                                                                          ccAAATAGA‑TTGTGTTTGGTTTTTTTTTT‑T‑AAT‑‑TT‑‑T‑‑‑T‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                      <  1:3590487/128‑1 (MQ=255)

                                                                                          ccAAATACATTTGTTTTGGTTTTTTTTTTT‑T‑ATTT‑TT‑‑A‑‑‑A‑AAAAAAAAAAATAAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAttt                                         <  2:1694453/128‑1 (MQ=255)

                                                                                          aaaaaTATA‑TTTTTTTTTGTTTTTTTTTT‑T‑AATATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTta                                        <  2:707641/126‑1 (MQ=255)

                                                                                           cAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGAATAAAATAAAAAATTGTTTTTCAAATAATTATTCAGGAGTAAATTTAAAAAAACAAGATTtat                                       >  2:1814729/1‑128 (MQ=255)

                                                                                           aaaataaa‑tTTTTTTTTTTTTTTTTTTT‑T‑AATA‑TT‑‑T‑‑‑A‑AAAAAAAAAAATAAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat                                       <  1:3684255/127‑1 (MQ=255)

                                                                                            aaaTACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GAA‑A‑AAAAAAAAAAA‑AAA‑AAAAAAAATTTGAAAAAAATAAAAAATTTTTTTAAAAATAATAATTAATAATAAAATTAAAAAAAACaaaattaat                                       >  2:4697818/1‑121 (MQ=255)

                                                                                            aaaTACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑AAATATAATTTGCATACAATAAAAAATTGTTTTTCAAATAATTTTTCGGGAGAAAATTTAAAAAACCAAGATTtata                                      >  2:5186849/1‑128 (MQ=255)

                                                                                             aaTACA‑TTTTTTTTGGTTTTTTTATT‑T‑ACTATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATaa                                     <  1:1507981/128‑1 (MQ=255)

                                                                                             aaTACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑AAATATAATTTACAAAAAAAAAAAAATTTTTTTTAAAATAATTATTAATTATTAAATTAAAAAAAAAAAAATTTATaa                                     >  2:5049054/1‑128 (MQ=255)

                                                                                             aaTACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGATTAAATTTAAAAAACCAAGAGTTATaaa                                    >  1:3005455/1‑128 (MQ=255)

                                                                                              aTACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GAAAA‑AAAAAAAAAAA‑AAA‑AAATATAATTTTAAAAAAATAAAAAATTATTTTTAAAAAAATAATTAAATAATAAATTTaaaaaaaaaaaaataaaa                                      >  2:1125044/1‑116 (MQ=255)

                                                                                              aTACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑AAAAAAAATTTCAATAAAAAAAAAAATTTTTTTAAAAATAATTTTTATGTTTAAAATTTAAAAAACAATTATTTATaaa                                    >  2:1268658/1‑128 (MQ=255)

                                                                                               tACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAAAATAATTTTCATAAAATAAAAAATTGTTTTTCAAATAATTATTAAGTATTAAATTAAAAAAACAAAAATTTAaaaaa                                   >  2:1038221/1‑127 (MQ=255)

                                                                                               tACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAAAAAAATTTGAATACAATAAAAAATTTTTTTTCAAATAATTATAAAGTATTAAATTTAAAAAAACAAGATTAATaaaaa                                  >  2:4971090/1‑126 (MQ=255)

                                                                                               caCA‑ATGTATTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GAAAA‑AAAAAAAAAAA‑AAA‑TAAAATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTAATAATAATTAAATTTAAAAAACAAATATTTATaa                                     >  1:1000173/2‑128 (MQ=255)

                                                                                                tcA‑TTGTGTTTGTTTTTTTTATT‑T‑AATATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATc                                  <  1:4563145/127‑1 (MQ=255)

                                                                                                  a‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑AAATAAAATTTTCATAATATAAAAAATTTTTTTTAAAATAAATATTAATGTTTAAATTTAAAAAAACAAGATTTATAAATAtt                                >  1:2929407/1‑128 (MQ=255)

                                                                                                    ttttttttGGTTTTTTTTTT‑TAATTT‑TT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTg                               <  1:4426697/123‑1 (MQ=255)

                                                                                                         ttttttttttttATT‑T‑AATATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttt                          <  2:5493176/123‑1 (MQ=255)

                                                                                                         ttttGTTTTTTTTTT‑T‑AATT‑TT‑‑T‑‑‑ATAAAAAAAATAA‑AAA‑TAATAATATTTGCATACTTTAATAAATTTTTTTTCAATTAAGTTTTCATGAGTTAATTTAAAAAACCATTAGTTATAAATCTTGGtttt                          <  1:4798861/128‑1 (MQ=255)

                                                                                                         tttGTTTTTTTTATT‑T‑ACTATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttt                          <  1:2356229/128‑1 (MQ=255)

                                                                                                         tttGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCAAACTATAAAAAATTTTTTTTAAAATAATTATTAAGTATTAAATTTAAAAAACCAAAATTTAAAAATCTTGTtttt                          >  2:214202/1‑128 (MQ=255)

                                                                                                           ttgTTTTTTTATTAT‑ATTT‑TT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttttt                        <  2:875335/126‑1 (MQ=255)

                                                                                                           tGGTTTTTTTATT‑T‑ACTA‑TT‑‑GAA‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTTTTTTTCAAATAATTATTCAGTAGTAAATTTAAAAAACAAATAGTAATAAATCTtttttttt                         >  1:5341265/1‑128 (MQ=255)

                                                                                                           tGGTTTTTTTATT‑T‑ACTA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAAAATAATTTGCATACTATAAAAAATTTTTTTTCAAATAAGTATTCAGGATTAAATTTAAAAAAACAAGAGTTATAAATCTTGGtttttt                        >  1:3467466/1‑128 (MQ=255)

                                                                                                             gTTTTTTTATT‑T‑AATA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTATCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGtt                     <  1:860152/128‑1 (MQ=255)

                                                                                                               ttttttATT‑T‑ATTATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGttt                    <  2:418554/128‑1 (MQ=255)

                                                                                                                 ttttATT‑T‑AATATTT‑‑A‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtat                  <  2:3721077/128‑1 (MQ=255)

                                                                                                                 ttttATT‑T‑AATA‑TT‑‑T‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtata                 <  1:2060153/128‑1 (MQ=255)

                                                                                                                  tttttt‑t‑aATA‑TT‑‑T‑‑‑A‑ATAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTatat                <  1:2560494/128‑1 (MQ=255)

                                                                                                                  tttatt‑t‑aCTA‑TT‑‑GAA‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATAATAAAGTATTAAATTTAAAAAACAAATATTTTTATAAATTTGTTTTTTTTTtat                  >  1:464020/1‑128 (MQ=255)

                                                                                                                             tA‑TT‑‑GA‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGAATACTATAAAAAATTTTTTTTAAAATAATTATTAATGATTAAATTTAAAAAACCAATAGTTATAAATCTTGTTTTTTTTTTTTATTTAtttttt        >  2:2712790/1‑128 (MQ=255)

                                                                                                                             tA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATAATATAAAAAATTTTTTTTAAAATAATTATTCAGGATTAAATTTAAAAAACCAAGAGTTATAAATATTGGTTTTTTTTTTAAATTATTAtttt       >  2:1596942/1‑127 (MQ=255)

                                                                                                                                aatttttaa‑aaaaaaaaaaa‑aaa‑TAATATAATTTGCATACTATAAATAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattattat          <  1:4148236/120‑1 (MQ=255)

                                                                                                                                 t‑‑G‑‑‑A‑AAAAAAAAAAT‑AAT‑TAATATATTTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCt    <  1:5433923/128‑1 (MQ=255)

                                                                                                                                     ttaa‑aaaaaaaaaaa‑aaa‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAttt                                         <  2:4278816/89‑1 (MQ=255)

                                                                                                                                     ttaa‑aaaaaaaaaaa‑aaa‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTc     <  2:2973326/125‑1 (MQ=255)

                                                                                                                                       aa‑aaaaaaaaaaa‑aaa‑TAATATAATTTTCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCtt   <  2:3831346/127‑1 (MQ=255)

                                                                                                                                        a‑aaaaaaaaaaa‑aaa‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCttt  <  1:3882368/128‑1 (MQ=255)

TTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACA‑TTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑G‑‑‑A‑AAAAAAAAAAA‑AAA‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTTT  >  CP016816/34819‑35073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.