| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,862,661 | 0 | T | G | 40.0% | 38.9 / 27.8 | 67 | pseudogene (943/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base T (15/24); new base G (24/2); total (41/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.34e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.20e-01 | |||||||||||
CCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑AATC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGC > NC_000913/3862513‑3862803 | ccGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTg < 2:65432/151‑1 (MQ=255) aTGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTTAGGGTGggg‑g > 1:304337/1‑149 (MQ=255) aTGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑aa < 1:904400/151‑1 (MQ=255) aTGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑aa < 2:804427/151‑1 (MQ=255) gCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑AATC‑AGc < 2:223634/151‑1 (MQ=255) acaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGTGG‑G‑AATC‑AGCAAGgcc > 2:69452/1‑150 (MQ=255) ccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGTAAAGGTTCGG‑G‑GAGC‑AGAAAGAGCG‑cc > 2:85790/1‑150 (MQ=255) ccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGATCGGTAATTCCCACCAGCATGGC‑GGTTTAGGGTGCGG‑G‑GATC‑AACAAGGCCT‑cc > 2:12024/1‑150 (MQ=255) aaaGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGGAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTTAAGGTGCGG‑G‑AAAC‑AGCAAAgccg‑cccc > 2:626041/1‑148 (MQ=255) gagaTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTTAGGGTGCGG‑G‑GATC‑AGCAAACCCC‑CCA‑Ccttt > 1:776671/1‑151 (MQ=255) aTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGTTGGGG‑G‑GATC‑AGCAAACCCC‑CCC‑Ccttt > 1:45783/1‑148 (MQ=255) tACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGGAAATTCCAGCGGGTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGGTGCGG‑G‑GAGG‑AACAAACCCC‑CCC‑Ctttttctccagtt > 2:1037453/1‑142 (MQ=255) ggacGACATGGGGCCCCCCAGCCGGGCGTGCCCCGAAAACAGCAACGGAAAAAAAAAAAGGAAGGAAAATCCCGGGGGTTCGGTACTCCCCCCCAGC‑TGGG‑GGGTTAGGTTGGGG‑GAAATA‑AGAAAGCCCG‑CCA‑CTTTTA‑CCCGAtt < 2:976772/144‑1 (MQ=255) ggTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGGTGCGG‑G‑GATC‑AGCAAACCCC‑CCC‑CTTTTT‑CCCGCtttt > 1:863402/1‑149 (MQ=255) gTCGACATGGAGGCCGCCAGCGCGGCGTGTCCCACAAACAGCAACGGTAAAATGAACAGGAAGGTAATTCCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GTTTAGGTTGGCGG‑G‑AAAC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCg < 1:1171068/151‑1 (MQ=255) tCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTTCGG‑G‑GATT‑AGGAAAACCG‑CCACCTTTTA‑CCCG‑TTTTcc > 1:707100/1‑149 (MQ=255) cGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTTAAGGTGCGG‑G‑GAAC‑AACAAACCCC‑CCC‑CTTTTT‑CCCCAtttt > 1:566746/1‑146 (MQ=255) gACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGTAAAGATTGGG‑G‑GAGC‑AGCAAACCCC‑CCC‑CCTTTT‑cccccgtttttggt > 2:926714/1‑139 (MQ=255) acttggggcccgccAACACGGCGTTCCCCCCAAACAACAACGTGGAAAGGAACAGGAAGGTAAACCCCAGGGTTCCGGTAATCCCCCCCAGCTTGGC‑GGTT‑AGGTTGGGG‑GAAATA‑AGAACGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGt < 2:90360/140‑1 (MQ=255) cATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGGTGCGG‑G‑GATC‑ACCAAACCCG‑CCA‑CTTTTA‑CCCCCTTTTCCggcg > 1:1058488/1‑147 (MQ=255) gccgccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTTCGG‑G‑GATC‑AGCAAACCCG‑CCC‑CTTTTT‑CCCGATTTTCCCGGGCGGGAggg > 1:226635/1‑148 (MQ=255) cgccAGCAGGGGGTGTACCGCAAACAAAAACGATAAAAGGAACAGGAAGAAAAATTCCAGGGTTTCGATATTCCCCACCAGCAGGGC‑GGTTAAGGTTGCGG‑A‑ATTC‑AGAAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGaa < 1:1071373/150‑1 (MQ=255) aGCACGGCGTTAACCGAAAACAGAAGCGGTGAAATAAACAGGAAGGAAAATTCCAGCGGTTGGGAAATCCCCCCCGTCAGGGC‑GTTTAAGGTGGCGG‑G‑AATC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTa < 1:1279273/149‑1 (MQ=255) aGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGGTTCGG‑G‑GATC‑AGCAAACCCC‑CCC‑CTTTTT‑CCCCATTTTTCCGTGCgg > 1:608603/1‑139 (MQ=255) aCGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGGAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGGTTAGGGTGGGGG‑G‑AAAC‑A‑CAAAACCC‑CCC‑CTTTTT‑CCCCCTTTTTCGGGGGGGccggggagaac > 1:151502/1‑137 (MQ=255) ggCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGATAAGGTTGTGG‑G‑AATT‑AGCCAGCCCG‑CCC‑CTTTTA‑TCCGATTTTTCCGTTCGGCAGGGAAgga > 1:416442/1‑142 (MQ=255) ggCGTGTACCGAAACCAGCAAGGGTGAAATGAACGGGAAGGAAAATCCCAGGGGTTCGTTATTCCCCCCCAGCGGGGC‑GGTTAGGGTGGCGG‑G‑AATC‑AGAAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCg < 2:622405/149‑1 (MQ=255) gCGTGTACCGAAAACAGCAACGGAGAAATAAACAGAAAGGTAAATTCCGGGGGTTCGGTAATCCCCACCAGCATGGC‑GGTTAGGTTGGCGG‑A‑AATC‑AGAAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTa < 1:255709/151‑1 (MQ=255) cGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTGGGG‑G‑AAAT‑AGCAAACCCC‑CCA‑CTTTTT‑TCCGCTTTTTCGGGGCGGCGGGGGAGTACCACGCTa > 1:529298/1‑150 (MQ=255) gtgacccGAAAACAGCACCGGTAAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATCCCCCCCAGTGGGGC‑GGTTAAGGTTGGGG‑G‑AACC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTaaa < 1:384441/146‑1 (MQ=255) tACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTGCGG‑G‑GATC‑AGCAAGACCG‑CCC‑CTTTTT‑CCCGATTTTTCGGGGCGGGAGTGGAGGAAATCGCTaaa > 2:343285/1‑148 (MQ=255) ccccAAACAGCAACGGGGAAGAAAGAAGGAAGTAAAATCCCAGCGGTT‑GTTAAACCCCCCCCGGAGGGT‑CGTTTAGGGGGGGG‑G‑AAACAAGCACGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGaa < 2:1060169/146‑1 (MQ=255) cAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGGTGCGG‑G‑GATC‑AGCAAACCCC‑CCC‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAATACATCGCTAAAGAAAAGcc > 2:696331/1‑151 (MQ=255) accagcagGGGAGAAAGGAAAGGGAAGAAAAGTCCCAGGGGTTCGTTATTCCCCCCCAGCA‑GGG‑GGTTGGGGGTGGGGAA‑AACC‑ACCACGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGcc < 2:331321/147‑1 (MQ=255) aaCAGCAACGGAAAAAGAAAGAGGAAGGAAAATTCCAGGGGTTCGTTAATCCCCACCAGCAGGGC‑GTTTAGGGTGGGGG‑A‑AATC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCa < 2:776643/151‑1 (MQ=255) aCAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTTCGG‑G‑GATC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTTCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATACCCAc > 1:1251632/1‑151 (MQ=255) aCGGTGAAATAAACGGGAAGGTAAATTCCGGCGTTTCGTTAATCCCCCCCGGCATGGC‑GGTTAGGGTTGGGG‑G‑AATC‑AGAAGGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGc < 2:137656/148‑1 (MQ=255) cGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑AAAC‑AGCAAACCCG‑CCA‑CTTTTA‑ACCCATTTTCCCGGGCGGCAGGGGAGTAAAACGCTAAAAAAAAACCCACCGCA‑cc > 1:48815/1‑150 (MQ=255) ggaaaaaTGAAGGGAAAGGTAACTCCCGGCGGTGCGGTAATCCCCACCAGCGGGGC‑GGTGAGGGTGGGGG‑A‑AACA‑AGCAACCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCa < 2:1209162/146‑1 (MQ=255) ggTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑GATC‑AGCAAACCCG‑CCC‑CTTTTA‑CCCGATTTTCCGGGGCGGCAGGGAAGGACAACGCTTAAGAAAAGCCCACGGCA‑cc > 1:269675/1‑149 (MQ=255) ggTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGTTGCGG‑G‑GATC‑AGCCAGCCCGCCCC‑CTTTTA‑CCTAATTTTCC‑GTGCGGGCGGGAAGGACATCGCaaaaaaaaatccccagg > 2:1200109/1‑136 (MQ=255) aaaggaaaaggaAGTTAATCTCCAGCGGTTCGTAAATCCCCCCCAGATTGGG‑GGTAAAGGTGGGGG‑G‑AAAA‑AGAAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGa < 2:1006857/150‑1 (MQ=255) aataaaagggAAGATAAATCCCCGGGGTTCGGAAATCCCCCCCAGCGTGGC‑GGTTAGGTTTGCGG‑A‑AATC‑AGCAACCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGAtt < 2:451738/143‑1 (MQ=255) aaggacagggAGGGTAAATTCAGGCGGTTGGGTAACCCCCCCCGGCATGGC‑GGTAGAGGTGGGGG‑A‑AATC‑AGCAACCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGAtt < 2:637260/143‑1 (MQ=255) aaTGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGGTAAAGTTGGGG‑G‑GATC‑AGGAAGCCCC‑CCC‑CTTTTT‑CCCGATTTTTCGGGGGGGGCGGGGAGTACATCGCTAAAGAAAAACCCACCGCA‑CCAAAGaat > 2:420945/1‑149 (MQ=255) aaTGAAAGGGAAGTTAAATCCCAGCGGTTCGGTATTCCCCCCCAGCAGGGC‑GTTAAAGGTGGCGG‑A‑AATA‑AGAAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGAtt < 1:800034/151‑1 (MQ=255) aTGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGATTGGG‑G‑GAGC‑AGGAAGCCCG‑CCC‑CTTTTT‑CCCCGTTTTTCGGGGCGGCAGGGGAGAAAATCGCCAAAGAAAAACCCACCGCC‑CCCAAGAatt > 2:1063286/1‑151 (MQ=255) tGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGGTGCGG‑G‑AATC‑AGCAAGCCCG‑CCA‑CTTTTA‑TCCGATTTTTCCGTGCGGCCGAGAAGTACATCGCTCAAGAAATACCCACCGCA‑CCCAAAAtttt > 1:1151637/1‑151 (MQ=255) aGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTGCGG‑G‑GATC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCCATTTTTCCGGGCGGCAGGGAAGAACATCGCTAAAGAAAAACCCACCGCA‑CCAAAAAttttt > 1:544760/1‑147 (MQ=255) aGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTGCGG‑G‑AAGC‑AGCAAACCCC‑CCC‑CTTTTT‑ACCCATTTTCCCGTGCGGCAGGGAAAGACAACGCTAAAGAAATGCCCACGGCA‑CCAAAAAttttttggt > 1:62370/1‑147 (MQ=255) aaaTCCCAGGGGTTCGGTAATCCCCCCCAGCAGGGG‑GTTTAAGGTTGGGG‑G‑AATC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGt < 1:518150/149‑1 (MQ=255) aaTTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTTAAGGTGCGG‑G‑GATC‑AGCAAGGCCC‑CCA‑CTTTTACCCCGTTTTTCCGG‑GGGGGAGTGAAGGACATCGCTTAAAAAAAACCCACCGCACCCAAAAAttttttgttaacctgc > 2:659775/1‑139 (MQ=255) aaTTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑GATC‑AGCAAGCCCG‑CCA‑CTTTTT‑CCCGATTTTCCGGTGGGGCAGTGAAGGACATCGCTAAAGAAATGCCCACCGCA‑CCAAAGATTTTTTAGTTACCGt > 1:765428/1‑148 (MQ=255) aaTTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTGCGG‑G‑AATA‑AGCAAGCCCC‑CCA‑CTTTTA‑TCCCATTTTCCCGGGCGGGCGTGGAGTAAATCGCTAAAGAAATGCCCACCGCA‑CCCAAAATTTTTTAGTTACCgg > 2:492924/1‑147 (MQ=255) ttCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTGCGG‑G‑AATC‑AGCAAACCCG‑CCA‑CCTTTT‑CCCCATTTTCCGGTGCGGCCGGGAAGTAAATCGCTAAAGAAAAGCCCACGGCA‑CCAAAGATTTCTTAGATACCGTGCCgg > 2:1034315/1‑151 (MQ=255) cAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑AATC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCCATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAAAGCCCACGGCA‑CCCAAGATTTTTGAGTTACCGTGCAggg > 1:834886/1‑149 (MQ=255) gCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGTTGCGG‑G‑GATC‑AGCAAACCCC‑CCC‑CTTTTT‑CCCGATTTTTCGGTGCGGCAGGGAAGGACATCGCCAAAGAAAAGCCCACGGCC‑CCCAAGATTTTTTAGTTACCGTGCAggg > 2:617927/1‑147 (MQ=255) cGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGGTGCGG‑G‑GATC‑AGCCAGCCCC‑CCA‑CCTTTA‑CCCGCTTTTCCGGGGGGGGAGTGGAGTACAACGCTAAAGAAAAGCCCACCGCA‑CCAAAGAATTTTTAGTTTCCGTGCAgggggaa > 2:909522/1‑146 (MQ=255) ggTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑AATC‑AACAAACCCG‑CCC‑CCTTTT‑CCCCATTTTTCGGGGCGGGAGGGGAGGACCTCGCTAAAAAAAAGCCCACGGCA‑CCAAAAAATTTTTAGGTAACGTGCAGGGGaaaa > 2:582215/1‑150 (MQ=255) ttCGGTAATCCCCACCAGCAGGGG‑GTTTAGGGTTGGGG‑G‑ATAC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAAcc < 1:926752/150‑1 (MQ=255) ggTAATCCCCCCCAG‑AAGGG‑GGTTTAGGTTGGGG‑G‑AAACAAGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCg < 2:812286/148‑1 (MQ=255) gTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑AATA‑AGCAAGCCCG‑CCC‑CTTTTA‑CCCGATTTTTCGGTGCGGCAGTGAAGTACATCGCCAAAGAAAAACCCACGGGC‑CCAAAGATTTTTTAGTTACCGTGCAGGGCAAAAACGc > 1:684348/1‑148 (MQ=255) aTTCCCACCAGCATGGC‑GGTTTAGGTTGCGG‑G‑GATC‑AGCAAGCCCC‑CCA‑CTTTT‑‑CCCGATTTTCCGGTGCGGGAGTGAAGGACATCGCTTAAGAAATGCCCACCGCA‑CCCAAGATTTTTTAGGTAACGGGCAGGGCAAAAACGCCCTcc > 1:720082/1‑149 (MQ=255) aTTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑AATC‑AACAAGCCCC‑CCA‑CTTTTA‑CCCGCATTTTCGGTGGGGCAGTGAAGTAAATCGCTAAAGAAATGCCCACGGCA‑CCCAAAATTTTTGTGTTACCGCGCAGGGCAAAAACGCCtttc > 2:709151/1‑148 (MQ=255) ccaGCATGGC‑GGTTAAGGGTGCGG‑G‑GATC‑AGCAAGCCCG‑CCA‑CTTTTT‑CCCGATTTTCCGGGGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCCAAGATTTTTTAGTTACCGTGCCGGGCAAAACCGCCTTCCGGGaa > 2:1046934/1‑148 (MQ=255) ggC‑GGTAAGGGTGGAGG‑G‑AATG‑GGGAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTc < 1:645759/151‑1 (MQ=255) ggTTAGGGTTGCGG‑G‑AATC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGc < 1:423088/151‑1 (MQ=255) | CCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGG‑G‑AATC‑AGCAAGCCCG‑CCA‑CTTTTA‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACGGCA‑CCAAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGC > NC_000913/3862513‑3862803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |