| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,222,233 | 0 | G | A | 42.9% | 111.8 / 50.1 | 91 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| Reads supporting (aligned to +/- strand): ref base G (40/12); new base A (0/39); total (40/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.96e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCT > NC_000913/1222083‑1222381 | gtgtGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTg < 2:992385/151‑1 (MQ=255)gtgtGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTg < 2:185910/151‑1 (MQ=255) tgtgAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACGTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTg < 1:470059/150‑1 (MQ=255) gtgAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGaa < 2:387385/151‑1 (MQ=255) gtgAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGa > 2:952141/1‑150 (MQ=255) gtgAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGa < 1:1316805/150‑1 (MQ=255) gtgAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGa < 1:1371857/150‑1 (MQ=255) gAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGaaa < 1:626978/150‑1 (MQ=255) gAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAat > 2:905312/1‑151 (MQ=255) aaaGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAat > 1:1062560/1‑150 (MQ=255) aaaGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAat > 2:676151/1‑150 (MQ=255) aaaGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAat < 1:116755/150‑1 (MQ=255) gAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑tt < 2:1474773/151‑1 (MQ=255) aaCAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTc < 1:1071869/151‑1 (MQ=255) aGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGAt < 2:429713/151‑1 (MQ=255) aTGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATcc < 2:741189/151‑1 (MQ=255) cGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCccgccg > 2:225041/1‑150 (MQ=255) gTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGtt > 1:1188660/1‑149 (MQ=255) gTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGtt > 2:573404/1‑149 (MQ=255) tAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGc > 2:1445373/1‑151 (MQ=255) aaTTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCt > 1:1043872/1‑151 (MQ=255) aaTTTGGGGCAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCt > 1:933178/1‑151 (MQ=255) gggggAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGAGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTaaaa > 2:792063/1‑150 (MQ=255) gggaaaaaTAAAATTTGGAGAAAATGCAAA‑CGGAAACCCAGCGGCCAGGTGGTGGGGAA‑TGGGGGCGGGCAC‑CTGGGGGATAATGCCTCCAACAACACCGAAGTGAAGGGGGGCATAAAAT‑ATAGG‑TTCGTATCCCGCCGTTAGCTaaaaa < 1:975114/146‑1 (MQ=255) gggAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAAc > 2:727243/1‑151 (MQ=255) aaaTTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACcgc > 2:1174510/1‑151 (MQ=255) aaTAAAACTGGGCGAAAAGGGCAC‑CCTAAACCCAGCGGCCGGCGTCGGGGGAA‑TGTGGGCGTGCGG‑TTGGGTGATAATGGCTAAAATGCCACCGCGGTGATGGGGGCCCTAAAAT‑ATAAG‑TTCTGACCCCGCCGTTAGCTAAAAAACcgcg < 2:288848/151‑1 (MQ=255) ttAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGcgtc > 2:2091358/1‑151 (MQ=255) tAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGcgtcg > 1:48417/1‑151 (MQ=255) aaCTTGGCGTAAAGGGCAC‑CCTGAACCCAGCGGCGTGCGTGGGGGGAG‑TGGGGGCGTGCGG‑GGGGGTAAAAAGGCCAACAAGAACCCCGCAGTGATGGGGGGCATAAAAA‑AAAAT‑TTTGAAGCCCGCCGTTAGCTAAAAAACCGCGTCGTa < 1:1764717/151‑1 (MQ=255) gggCGTAAATGGCAC‑CCTGAATCCAGCGGCCAGCGTCGGGGGAG‑TGGGGGCGTGCTG‑TGGGGTGATAATGGCAAAAATGCCCCCCCAGTGTTGGTGGGCCTAAAAT‑ATATG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTAtt < 2:793460/148‑1 (MQ=255) gggTAAATGGCAC‑CCTAAACCCGGCGCCCAGCGTCGGGGGAA‑TGGGGGCGTGCAG‑CTGGGTGATAATGGTTACAATGCCCCCGCAGTGATGGGGGGCCGAAAAT‑ATATG‑TTTTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATc < 2:830040/149‑1 (MQ=255) ggcgaaaaGGCAACCCTAAACCCGGCGGCCAGCTTCTGGGGAT‑TGGGGGGGTGCGG‑TTGGGTAAAAAGGGCTAAAATGACCCCGCAGTGAGGGTGGGCCTAAAAT‑ATAAT‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCAt < 2:1737283/147‑1 (MQ=255) gCGAAAAGGCCAC‑CCTAAACCCAGGGGCCAGCGTCGGGGGAA‑TGGGGGCGTGCAG‑CTGGGTGATAAGGGCTACAATGCCCCCGCAGTGAGGGGGGGCCTAAAAA‑ATAAT‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTc < 2:981264/148‑1 (MQ=255) gTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCg > 2:631925/1‑150 (MQ=255) gTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCg > 1:988557/1‑150 (MQ=255) aaaGGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTAATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTAAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCg < 1:198876/148‑1 (MQ=255) aaTGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGAcg > 1:1141587/1‑150 (MQ=255) agggCAA‑CCTGAATCCGGGGGCCAGTTTCGGGGGAA‑GGGGGGCGTGCGG‑CTGGTTTATATTGCCTCAACTGACCCCGGGGTGATGGGGGCCATAAAAA‑GTAAG‑TCCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGAcgcg < 1:632761/149‑1 (MQ=255) aatgacacccgaaacccAGCGGCCGGCGTGGGGGGAT‑GGGGGGCGTGCAG‑GGGGGTAAAAAGGGCTACAAGGCCCCGGAGGGGGGGGGGGGCCTAAAAT‑ATAAG‑TTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGAcgc < 1:2078184/136‑1 (MQ=255) a‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACa > 1:903434/1‑150 (MQ=255) cctaaacccgggggCCGGGGTCGGGGGAG‑GGGGGGCGGGCGG‑GGGGGTGATAAGGGCTAAAATGACCCCGCAGTGTGGGGGGGCTTAAAAT‑AAAAT‑TTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACa < 2:1157705/137‑1 (MQ=255) ccgaaacccAGCGCCCGGCGTTGGGGGAA‑GGGGGGCGTGCAG‑GGGGGTGATAAGGGCTACAATCCCCCCGAGGTGAGGGGGGGCCTAAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACat < 1:331124/143‑1 (MQ=255) ccTGAACCCGGCGGCCAGGTTCGGGGAAA‑TGGGGGCGTGCAG‑GGGGGTGATAATGGCTACAATAACACCGCAGTGAGGGTGGGCTTAAAAT‑ATAAT‑TTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACata < 2:556329/151‑1 (MQ=255) accccAGCGGCCAGCGTCTGGGGAT‑TGGGGGCGTGCGG‑CTGGGTAATAATGGCTACAATGACCCCGCGGTGGTGGGGGCCCTAAAAT‑AAAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGa < 2:52405/147‑1 (MQ=255) aagcgaggggCCGGCGT‑TGGGGAAGTGTGGGGGGGCAG‑GTGGGAGATAATGGCTAAAATGACCCCGCAGTGTGGGGGCGCAAAAAAA‑ATAAT‑TTTTGTGCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACatat < 2:1530797/140‑1 (MQ=255) cgaGCGGCCGGCGTCGGGGGAA‑TGTGGGCGGACAG‑GGGGGTAAAAATGCTTAAAACCACCCCGGAGTGATGGTGGGCTTAAAAT‑TTAAG‑TTTTGAGCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACatat < 2:33118/143‑1 (MQ=255) ccAGGGGCCGGCGTCGGGGGAA‑TGGGGGGGGGCGG‑TGGGGTGATAATGGCTAAAATGACCCCGCAGTGATGGGGGCCCTAAAAT‑ATAAG‑TTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAata < 2:1163905/151‑1 (MQ=255) ccAGCGCCCAGCGTGGGGGGAA‑TGTGGGCGGGCAG‑GTGGGTAAAAATTGCTACAATGCCCCCGAAGTTA‑GGGGGGTCAAAAATAATATT‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAata < 1:135556/151‑1 (MQ=255) cggCGGCCAGCGTGGGGGGAG‑TGGGGGGGGGCAG‑GTGGGTGATAGGGGCTACAATGCCCCCGCGGTGATGGGGGGCTAAAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAat < 1:612388/147‑1 (MQ=255) aGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAAtatt > 1:377718/1‑151 (MQ=255) ggCCGGCGTGGGGGGAA‑TGGGGGGGTGCAG‑GTGGGTAATAATGGCTAAAAGGACCCCGCGGTGATGGGGGGCCTAAAAT‑ATAAT‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAAtattat < 2:322697/150‑1 (MQ=255) ggCCAGCGTCTGGGAAT‑TGGGGGCGTGCAG‑CTGGGTAAAAATGGCTACAATGACCCCGCGGTGAGGGTGGGCAAAAAAT‑ATAAT‑TTCTTATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAAtattat < 2:926258/150‑1 (MQ=255) gCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAACtattat > 1:820936/1‑149 (MQ=255) ggcgtggggggAA‑TGGGGTGGCGCAG‑CTGGTTGAAGAGGGCTACAATGACCCCGTGGTGAGGGTGGGGGTGAATT‑ATAAT‑TTCGGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTAtttttt < 1:1485042/144‑1 (MQ=255) cGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGc > 2:1792745/1‑151 (MQ=255) gTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGcc > 1:1139483/1‑151 (MQ=255) tCTGGGGAA‑TGTGGG‑GGGCGGTGTGGGTGATAATGGCAACAATGACCCCGCGGTGTTGGTGGGCCTAAAAT‑ATAAT‑TTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGc < 2:2007430/149‑1 (MQ=255) tcggggAATTGGGGGCGTGCCG‑CTGGGTGATAATGCCTACAATACCCCCGTGTTGAGGGTGGCCTTAAAAT‑ATAAG‑TTCTCCCCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGc < 2:1022323/147‑1 (MQ=255) cTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCg > 2:1802645/1‑150 (MQ=255) ggggAT‑TGGGGGGGTGCAG‑GTGGGTAATAATGCCTACAATGACCCCGCGTTGAGGGTGGGCATAAAAT‑ATAAT‑TTCTGCTCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTAtttttt < 2:880086/144‑1 (MQ=255) ggggAA‑GGGGGGCGTGCAG‑GGGGGTGATAATGGCTACAATGACCCCGCAGTGAGGGTGGGCCTAAAAT‑ATAAG‑TTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGa < 2:828605/149‑1 (MQ=255) gggaattggggggGTGCAG‑CTGGGTGATAAGGGCTAAAATGACCCCGCAGTGATGGGGGGCCTAAAAT‑AAAAT‑TTCTTACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGc < 2:987091/137‑1 (MQ=255) tgtgGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGc > 1:659678/1‑151 (MQ=255) tgggggCGTGCAG‑CTGGGTGATAATGGCTACAATGACCCCGGAGTGTGGGGGGGCTAAAAAT‑ATAGT‑TTCTGGTCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACg < 2:1360833/147‑1 (MQ=255) tgGGCGTGCAG‑CGGGGTAATAATGGCAACAATGACCCCGCAGTGTGGGTGGGCCTAAAAT‑ATAAT‑TTCTAACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCa < 2:1119860/150‑1 (MQ=255) gTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGgtg > 1:1940087/1‑150 (MQ=255) tGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGtc > 1:536594/1‑151 (MQ=255) tGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGGGtc > 1:691446/1‑151 (MQ=255) cTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGtcatca > 1:1473730/1‑150 (MQ=255) tGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAAt > 2:1950946/1‑151 (MQ=255) gggTGATAATGGCTACAAGCACACGGCAGTGAGGGGGGGCCTAAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAAt < 2:706415/150‑1 (MQ=255) gggTGAAAATGGCTAAAATGCCCCCGCGGTCATGGTGGGCCTAAAAT‑ATAGG‑TTTTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAAtt < 2:1167435/151‑1 (MQ=255) gggTGAAAAGGCCAAAAATGCCCCCGAAGTGATGGTGGGCCTAAAAT‑ATAGT‑TTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCaa < 1:895976/149‑1 (MQ=255) aaaaggccaaaaaTGACCCCGCGGTGGTGGGGGGCCAAAAAT‑AAAAT‑TTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTg < 1:192443/136‑1 (MQ=255) aTAATGCCTACAATGCCCCCGGGGGGGGGGTGGGCCAAAAAT‑ATAGT‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCg < 1:866264/150‑1 (MQ=255) tGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATc > 2:568729/1‑151 (MQ=255) gCTACAATGACCCCGAAGAGAGGGGGGGCTTAAAAT‑ATAAT‑TTCTTATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGa < 2:1000249/147‑1 (MQ=255) aaTGACACCGCGGTGAGGGGGGGCTTAAAAA‑ATAAT‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGc < 2:1086199/137‑1 (MQ=255) aaTGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGc > 2:1026747/1‑150 (MQ=255) aggACACCGCAGATATGGTGTGCC‑GAAAT‑AAAGGTTTCTGTTACCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGTCGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAg < 1:913501/146‑1 (MQ=255) accccGCAGTGATGGGGGCACAAAAAT‑ATATT‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCAtt < 1:634603/146‑1 (MQ=255) cacCGCGGTGATGGTGGCCCTAAAAA‑ATAAT‑TTTTGTTCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCAtt < 1:1635472/148‑1 (MQ=255) ccGGAGTGAGGGTGGGCTTAAAAT‑ATAAT‑TTCTGACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGc < 1:44795/149‑1 (MQ=255) cAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTc > 2:474318/1‑151 (MQ=255) agcgATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCt > 1:1489672/4‑151 (MQ=255) gTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCtt > 1:701111/1‑151 (MQ=255) tggtggGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAgc > 1:1308379/1‑151 (MQ=255) ggtggGCGAGAAAT‑ATAAG‑TTCTAACCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAgc < 2:352853/150‑1 (MQ=255) ggtggGCCTAAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAg < 2:1374373/149‑1 (MQ=255) gtggGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAgcgc > 2:181020/1‑151 (MQ=255) tggGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAgcgc > 1:935780/1‑150 (MQ=255) tggGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAgcgc > 2:1601344/1‑150 (MQ=255) cTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCt > 1:707962/1‑151 (MQ=255) | GTGTGAAAGTCGAACAAGATGGGGCGAGTAATTTGGGGGAAATTAAACTTGGCGTAAATGGCAA‑CCTGAATCCAGCGGCCAGCGTCTGGGGAA‑TGTGGGCGTGCAG‑CTGGGTGATAATGGCTACAATGACACCGCAGTGATGGTGGGCCTGAAAT‑ATAAG‑TTCTGATCCCGCCGTTAGCTAAAAAACCGCGTCGTATTCATCGACGCGGTACATATGAAATATTATTTTTTGCCGATAGCACGCATGGTGTCATCAATTGCCGTGATCAACAGCATTTGCGGGTCTTTAGCGCAAACCT > NC_000913/1222083‑1222381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |