Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,248,4310AC41.8% 84.7 / 17.0 56G34G (GGT→GGG) lysPlysine transporter
Reads supporting (aligned to +/- strand):  ref base A (24/8);  new base C (0/23);  total (24/32)
Fisher's exact test for biased strand distribution p-value = 4.74e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTAAAAATGAGGCGCGATTGTAGCAGACGAT  >  NC_000913/2248287‑2248581
                                                                                                                                                |                                                                                                                                                       
aaaCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGt                                                                                                                                                    >  1:921367/1‑150 (MQ=255)
    gAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑g                                                                                                                                               >  1:1034616/1‑150 (MQ=255)
        cGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATgg                                                                                                                                           >  1:226976/1‑150 (MQ=255)
          gAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAAc                                                                                                                                        <  2:580491/151‑1 (MQ=255)
          gAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAAc                                                                                                                                        <  2:716254/151‑1 (MQ=255)
           aaaCCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAAcc                                                                                                                                       <  1:410741/151‑1 (MQ=255)
             aCCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGc                                                                                                                                     <  2:660900/151‑1 (MQ=255)
                ggCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCa                                                                                                                                   >  1:935662/1‑150 (MQ=255)
                ggCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCa                                                                                                                                   >  1:629919/1‑150 (MQ=255)
                             ccAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGt                                                                                                                     >  1:1038296/1‑151 (MQ=255)
                               atttCCCCGAGCCTGGTCATCAGAAAGAAACCCACCGGCCCAACAAGAATATACGAGAGAAATCCCCCCCCGGCCCCTCCCTGAAAAATCTTTCCGCCAGAGCAAAAAAAAAGCCCTGTCCC‑GAGGAAACCGCCAATGGCAATCATCGTCa                                                                                                                   <  1:891001/149‑1 (MQ=255)
                                 ttCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAgg                                                                                                                 >  2:871081/1‑151 (MQ=255)
                                   cACCGAGACTGGTCATAAGAAAGTAACCCATCAGGCCAATCAGCATATACGAGAGAAATCCCCCCCCCGGACCTGCCTGAAAAATCGTGGCGCCAGAGGAAAAAAAAAGCCCTGTCCC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTg                                                                                                               <  1:826969/151‑1 (MQ=255)
                                         gaCTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACgcgc                                                                                                         >  1:144046/1‑151 (MQ=255)
                                             gttcatcaGGAAAAAACCCACCAGGCCAACCAGCATATACGAGAAAAATCCCCCGCCCGGACCTGCCTGAAAAATCGTTGCGCCAGAGGAAAAAAAAAGCCCTGTCCC‑GAGGGAACCGCCAATGGCAATCATCGTCAGGTGAcgc                                                                                                           <  2:951759/143‑1 (MQ=255)
                                             gttcataggaaaGAAAACCATCAGGCAAACAAAAATAGCCGAGAGCAATCCCCCGCCGGCCCCTCCCTGAAAAATCGTGGCGCCAGAGACAAAAAAAAGCCCTGCCCC‑GAGGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCttt                                                                                                     <  2:514941/141‑1 (MQ=255)
                                                catcaGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAAt                                                                                                  >  1:668515/1‑151 (MQ=255)
                                                 atcaGGAAGAAACCCACCGGGCAAAACAACATAAAGGAGACAAACCCCCCGCCCGGCCCTCCGTGAAAAACCGTGGCGCAAGAGAAAAAAAAAAGCCCTTTCCG‑GAGGAAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTaa                                                                                                   <  2:40861/149‑1 (MQ=255)
                                                    agaaaGAAAACCACCAGCCCAATCAGAATATACGAGAGCATTCCCCCGCCCGGCCCTGCCTGAAAAATCGTTGCGCAAGAGGCAAAAAAAAGCCCTGTACC‑TATGAAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAAtt                                                                                                 <  2:391990/145‑1 (MQ=255)
                                                       aaataaccctacggaccAATCAAAATATACAAGACAAATGCCCCACCCGGCCCTGCCTAAAAATTTGTTGCGCAAGATGCAA‑AAAAAGGCCCGTTCCGGAGGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGc                                                                                           <  2:284285/136‑1 (MQ=255)
                                                              ccATCGGGCAAAACACCAAATAGGAGAGCAACGCCCCCCCCGGCCCTGCTGGAGAAATCGTTGCGCCAGAGGAAAAAAAAAGCCCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGcc                                                                                    <  2:935652/151‑1 (MQ=255)
                                                                         accAGAATATCCGAGACAAACGCCCCCCCCGGCCCGGCATAAAAAATCGTTGCCCCAGAGACAAAAAAAAGCCCTGTCCC‑GAGGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCt                                                                          <  2:835239/148‑1 (MQ=255)
                                                                         aTCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCtg                                                                         >  2:558990/1‑151 (MQ=255)
                                                                         aTCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCtg                                                                         >  2:221485/1‑151 (MQ=255)
                                                                                tataCGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGCGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGtttt                                                                  >  2:1002868/1‑151 (MQ=255)
                                                                                   acaagacCAATCCCCCCCCCGGCCCTGCCTGAAAAACCGTGGCGCCAGGGCAAAAAAAAAGCCCTGTCCG‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGtttt                                                                  <  2:871017/145‑1 (MQ=255)
                                                                                   aCGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGt                                                               >  2:340201/1‑151 (MQ=255)
                                                                                        aactgccccccGCCGGGCCCAGCCGGAGAAGGGGTGGCGCCGGAGCAAAAAAAAAGACCTGTCCT‑ATTGGACCCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGt                                                               <  2:904605/139‑1 (MQ=255)
                                                                                           aacgCCCCGCCCGGCCCTGCCGGAGAATTCGTTGCGCAAGGGCCAAAAAAAAGCCCTGTCCC‑GAGGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGaa                                                        <  1:528128/147‑1 (MQ=255)
                                                                                           aaccccccGCCCGGCCCTGCCGGAAAAATCGTTGCGCCAGAGGAAAAAAAAAGCCCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGaa                                                        <  1:454186/146‑1 (MQ=255)
                                                                                           aaTGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGaa                                                        >  1:40769/1‑150 (MQ=255)
                                                                                           aaTCCCCCGCCCGGACCTGCTTGAAAAATCGTGGCGCCAGAGGAAAAAAAAAGCCCTGTCCC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGa                                                         <  1:626982/149‑1 (MQ=255)
                                                                                               ccccccccGGCCCTGCCAGAAAAATCGTTGCGCCAGAGACAAAAAAAAGCCCTGTCCC‑GAGGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCa                                                    <  1:180473/150‑1 (MQ=255)
                                                                                               ccccGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCAt                                                   >  1:772918/1‑151 (MQ=255)
                                                                                                 ccgccggAACCTGCATGAAAAATCGTGGCGCAAGAGGAAAAAAAAGGCCTTGTCCC‑GAGGAAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCa                                                    <  2:806273/148‑1 (MQ=255)
                                                                                                       ggACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAAt                                           >  1:369532/1‑151 (MQ=255)
                                                                                                        gACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATg                                          >  1:843955/1‑151 (MQ=255)
                                                                                                        gACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATg                                          >  2:145991/1‑151 (MQ=255)
                                                                                                          cctgcctgAAAAACCTTTGCGCCAGAGAAAAAAAAAACACCTGTACC‑GATGAAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATg                                          <  1:86872/149‑1 (MQ=255)
                                                                                                          ccgccctaaaaaaTCTTGGCGCCAGAGCAAAAAAAAAGCCCTGCACC‑GAGGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATg                                          <  2:9351/139‑1 (MQ=255)
                                                                                                             gcctgAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATc                                     >  1:882286/1‑151 (MQ=255)
                                                                                                              cctgAAAAATCGTTGCGCCAGAGGCAAAAAAAAGCCCTGTCCC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATc                                     <  1:643909/150‑1 (MQ=255)
                                                                                                                  aaaaaTCGTTGCGCAAGAGGAAAAAAAAAGCCCGTTACG‑GAGGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATcc                                    <  2:993172/145‑1 (MQ=255)
                                                                                                                   gaAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCtt                               >  1:663262/1‑151 (MQ=255)
                                                                                                                    aactcgtcccgcgAGAGAAAAAAAAAAGCCCTGTCCG‑GAGGAAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTa                              <  1:870262/142‑1 (MQ=255)
                                                                                                                    aaacggTTGCGCCAGAGCAAAAAAAAAGCCCGGTACG‑GATGAAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCtt                               <  2:959810/145‑1 (MQ=255)
                                                                                                                    aaaTCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCtt                               >  1:548667/1‑150 (MQ=255)
                                                                                                                    aaaTCGTGGCCCCAGAGGCAAAAAAAAGCCCTGTCCC‑GAGGAAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCtt                               <  2:946506/150‑1 (MQ=255)
                                                                                                                     aaTCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGAGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTa                              >  2:676818/1‑150 (MQ=255)
                                                                                                                         tgtGCGCGAGGGCCAAAAAAATGACCTGCACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTaa                             <  2:194536/145‑1 (MQ=255)
                                                                                                                             cgcAAGAGGAAAAAAAAAGCCCTGTCCC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTaaaaa                          <  1:245874/146‑1 (MQ=255)
                                                                                                                                   agcaaaaaaaaaCCCCTGTCCA‑GAGGAACCCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTAAAAATGAGGCGCGa                <  2:1034602/143‑1 (MQ=255)
                                                                                                                                       aaaaaaaaGCCCTCTCCG‑GAGGAAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCTCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTAAAAATGAGGCGCGATTGTa           <  2:416810/148‑1 (MQ=255)
                                                                                                                                       aaaaaaaaGACCTGTCCC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTAAAAATGAGGCGCGAtt              <  1:424262/145‑1 (MQ=255)
                                                                                                                                           aaaaGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTAAAAATGAGGCGCGATTGTAGc         >  1:926419/1‑149 (MQ=255)
                                                                                                                                             aaGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTAAAAATGAGGCGCGATTGTAGCAGAc     >  2:39469/1‑151 (MQ=255)
                                                                                                                                                aCCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTAAAAATGAGGCGCGATTGTAGCAGACGAt  >  2:105214/1‑151 (MQ=255)
                                                                                                                                                |                                                                                                                                                       
AAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAACAAAAAGACCTGTACC‑GATGGAACCGCCAATGGCAATCATCGTCAGGTGACGCGCCTTTAATTCACGGCGTAAGCCCGGCGCTTCTGTGGTTTTAGTTTCGGAAACCATACAAAAATGCTATCCATCTTAAAAATGAGGCGCGATTGTAGCAGACGAT  >  NC_000913/2248287‑2248581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑