New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	925901 =	102 (0.830)	27 (0.220) +C	20/296	13.1	23.5%	noncoding (71/88 nt)	serW	tRNA‑Ser
	?	NC_000913	= 1097399	75 (0.610)					intergenic (+570/+166)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.

CCCTATAGTAGCGCCCCGTTGCCACCCATGAGGTTTGGTAGCAAAACAATTTGGTGAGGTGTCCGAGTGGCTGAAGGAGCACGCCTGGAAA‑GTGTGTATACGGCAACGTATCGGGGGTTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/926023‑925901 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGC  <  NC_000913/1097399‑1097252                                                                                                                             |                                                                                                                                                     CCCTATAGTAGCCCCCCGTTGCCCCCCATGAGGTTTGGTAGAAAAACAATTTGGTGGGGTGTCCGGGTGGCTGAAGGAGCACGCCTGAAAA‑GTGTGTATACGGCAACGTATGGGGGGTTCGAACCCCCCCCTCACCGCCATATTTAAAGA                                                                                                                            <  2:1516732/150‑1         TAGCCCCCCTTTCCCCCCCATGAGGTTTGGTAGCAAAACATTTTGGTGAGGTGTCCGAGTGGCTGAAGGAGCACCCCTGGAAA‑GTGTGTATACGCCAACGTATCGGGGGTTCGAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTC                                                                                                                     <  2:206693/149‑1                                  aaaacagaaacAACAATTTGGTGAGGTGTCCGAGTGGCTGAAGGAGCACGCCTGAAAA‑GTTTGTATACGGAAACGTATGGGGGGTTCGAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTC                                                                                            <  2:1177287/138‑1                                        gaaacaaaAATTTGGGGAGGTGTCGGGGGGGCTGAAGGACCACGCCTGGAAA‑GTGTTTATACGGAAACGTATCGGGGGTTCGAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATA                                                                                       <  1:1628672/140‑1                                                    TGGTGAGGTGTCCGGGTGGCTGAAGGAGCACGCCTGGAAA‑GTGTGTATACGGCAACGTAGCGGGGGTTCGAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGG                                                                          <  2:1217566/149‑1                                                          GGTGTCGGAGTGGCTGAGGGAGCACGCGGGAAAA‑GTGTGTATACGGAAAAGTATGGGGGGTTCGAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGA                                                                  <  1:718846/151‑1                                                                      gcgGAAGGAGCACGCTTGGAAA‑GTGTGTATACGGCAACGTATGGGGGGTTCAACCCCCCCCCCCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACC                                                      <  2:1386696/148‑1                                                                          AAGGAGCCCGCCTGGAAG‑GTGTGTATACGACAACGTATCGGGGGTTCAACCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGG                                                   <  1:1781837/150‑1                                                                          AAGGAGCCCGCCTGGAAA‑GTGTGTATAGGGAAACGTATGGGGGGTTCAAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGG                                                  <  2:33153/151‑1                                                                            GGAGCCCGCCTGAAAA‑GTGTGTATAGGGAAACGTATGGGGGTTTCAAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACC                                                      <  2:1536383/145‑1                                                                            GGAGCCCCCCGGGAAA‑GTGTTTATAGGGAAACGTAGGGGGGTTTCGACCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGT                                                 <  1:779243/150‑1                                                                            GGAGCACGCCGGGAAA‑GTTTGTATACGGCAACGTAGCGGGGTTTCGACCCCCCCCCTCGCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCG                                                     <  1:252944/146‑1                                                                              AGCACG‑CTGGAAAGGTGTGTATACGGCAACGTATGGGGGTTTCAAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTC                                               <  1:436699/150‑1                                                                                  CGCCTGGAAA‑GTGTGTATACGGAAACGTATGGGGGGTTCGAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGA                                             <  2:366559/148‑1                                                                                    ccggaAAA‑GTGTGTATACGGCAACTTATGGGGGTTTCGAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTC                                               <  2:122225/139‑1                                                                                       GGAAA‑GTGTGTATACGGCAACGTAGGGGGGGTTCAAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGC                                     <  2:879941/151‑1                                                                                         AAA‑GTTTGTATACGGCAACGTATGGGGGTTTCGAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCG                                    <  2:1563954/150‑1                                                                                          aagGTGTGTATAGGGAACGGTAGGGGGGGTAGAAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGC                                     <  1:459822/146‑1                                                                                               gtgtaggcgaaAACGTAGGGGGGGTCCGACCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAG                                <  1:57321/138‑1                                                                                                   ATACGGAAACGTATCGGGGGTTCGACCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAG                            <  2:314702/149‑1                                                                                                       gaaaaggtaggGGGGGTTGAAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAG                            <  1:1629601/134‑1                                                                                                             gagggGGGGGATCAAACCCCCCCCTCTCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAG                    <  1:30443/142‑1                                                                                                                  GGGGGTTCAAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAAC           <  2:1585403/151‑1                                                                                                                  GGGGGTCCGAACCCCCCCCCCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTG              <  1:912563/148‑1                                                                                                                    ggtTTCGACCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGC         <  2:810212/148‑1                                                                                                                    GGGTTCAAACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGC         <  1:1487732/151‑1                                                                                                                       ttcaacCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCA        <  1:74532/143‑1                                                                                                                          aacCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTG     <  2:1420355/146‑1                                                                                                                           acCCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGC  <  1:155002/149‑1                                                                                                                           AACCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAG   <  1:262625/150‑1                                                                                                                             |                                                                                                                                                     CCCTATAGTAGCGCCCCGTTGCCACCCATGAGGTTTGGTAGCAAAACAATTTGGTGAGGTGTCCGAGTGGCTGAAGGAGCACGCCTGGAAA‑GTGTGTATACGGCAACGTATCGGGGGTTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/926023‑925901 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGC  <  NC_000913/1097399‑1097252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.