| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,423,297 | 0 | G | C | 39.9% | 263.9 / 72.5 | 143 | intergenic (+103/+126) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| Reads supporting (aligned to +/- strand): ref base G (22/64); new base C (57/0); total (79/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.29e-22 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 148 total aligned reads displayed.
CCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCG > NC_000913/3423147‑3423446 | ccTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCg < 1:1271412/151‑1 (MQ=255) aaaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCCCCC‑CCCggg > 1:253211/1‑150 (MQ=255) aTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCCCCACCC‑CCCcgg > 3:487955/1‑148 (MQ=255) tCAGAGCGTACGCGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGAC‑GCCCT‑CCCGCCACCC‑CCCCGGcc > 3:271929/1‑149 (MQ=255) cAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTGCTGCCCCCCCCCC‑CCCCGGcc > 2:1219963/1‑148 (MQ=255) agagCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCCGCCCGCCCCCC‑CCCGGGc > 1:1362909/1‑146 (MQ=255) aCGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCCCCCCCC‑CCCCCGCCGGTGCtt > 2:1381000/1‑147 (MQ=37) cGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCaa < 3:576764/151‑1 (MQ=255) gAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑c < 2:879721/151‑1 (MQ=255) gAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCCCCCCCC‑CCCCGGCCGTTGCTTCGCaa > 3:172826/1‑150 (MQ=255) aGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑G‑GGCCTTCCCCCCCCCC‑CCCccgccggccctt > 1:258983/1‑138 (MQ=255) gggCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑G‑GGCCCGCCCGCCCCCC‑CCCCGGGCGGTGCTTCTCaa > 1:1249997/1‑148 (MQ=255) gCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGTCTGCCCCCCCCCC‑CCCCGGCCGCTGTTTCGCCA‑A‑Gtt > 1:1553684/1‑150 (MQ=255) gCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCTGCCCGCCCCCC‑CCCCGGCCGTTGCCTCGCaa > 2:1026256/1‑146 (MQ=255) cATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCCCCC‑CCCCCGGCGGTTCGTCGCCA‑C‑Gtt > 1:1695446/1‑149 (MQ=25) aTTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCaa < 2:1531992/151‑1 (MQ=255) aTTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCa < 3:108898/150‑1 (MQ=255) ttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCTGCCCGCCACCC‑TCCCGGCCGGTGCTTCTCCA‑C‑GGTTaaa > 1:996255/1‑148 (MQ=255) tCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTCCCCCCCCCCC‑CCCCGGCCGCTGCTTCGCAA‑C‑GGTCAAAAcccc > 1:54219/1‑148 (MQ=21) tCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGTCTGCCCCCCCCCC‑CCCCGGCCCGTGGTTCTCCA‑C‑ATTCaaa > 1:30580/1‑145 (MQ=255) gCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCTTCCCCCCACCC‑CCCCCGCCGTTGCTTCGCAA‑C‑GTTCAAAACCCCTcc > 2:568724/1‑151 (MQ=21) cAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTcca < 1:20986/151‑2 (MQ=255) tAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCTTCCCCCCCCCC‑CCCCGGCCGGTGCTTCTCAA‑A‑GGTCaaaaacccccccc > 2:1670754/1‑138 (MQ=255) aTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCCCCC‑TCCCGGCCGCTGCTTCGCAA‑A‑GTTTAAATCCGCTCCccgc > 3:283629/1‑148 (MQ=21) aTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGa < 2:1380672/151‑1 (MQ=255) cATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑CCCCGGCCGGTGCTTCGCCA‑C‑GTTCAAATCCCCTCCCCGCGGGttt > 2:1191502/1‑151 (MQ=18) tAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCCCCACCC‑CCCCGGCCCGTGCTTTGCCA‑A‑GTTTAAATCCCCCCCccgccgggttgt > 2:927746/1‑142 (MQ=18) ttGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCTTCCCCCCACCC‑CCCCGGCCGATGCTTCTCAA‑C‑ATTCAAATCCGCCCCCGGCGGGTTTGt > 2:1436368/1‑147 (MQ=18) gAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTCCCCCCCCCCC‑CCCCGGCCGTTGCTTCGCAA‑C‑GTTCAAAACCCCTCCCCGCGGGTTTTTCCTAc > 2:95563/1‑150 (MQ=18) aaTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTc < 3:360167/151‑1 (MQ=255) aaTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GCCCTGCCCGCCACCCGTCCGGG‑CGTTGCCTCGCAA‑C‑AGTGCAATACGCTCCCGGCGCGCTTGTCCttc > 1:231968/1‑147 (MQ=255) aTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCg < 2:189834/151‑1 (MQ=255) gTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCggg < 4:434165/151‑1 (MQ=255) tAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGga < 1:857028/150‑1 (MQ=255) aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGgag < 2:383777/150‑1 (MQ=255) gTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑G‑GGCCTGCCCCCCCCCC‑CCCCGGCCGTTGCTTTGCCA‑C‑CGTCAAAACCCCTCCCCGCGGGTTTGTTCTACTCCGga > 2:838825/1‑148 (MQ=255) gTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCCCCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGaga‑g < 4:579029/151‑1 (MQ=255) gTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCTGCCCCCCCCCC‑CCCCGGCCGGTGCTTTGCAA‑C‑CATTCAATTCGCTCCCCCCGGAttttttccact > 2:1532450/1‑135 (MQ=17) cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTTCTGCCCGCCACCC‑CCCGGGGCGTTGCTTTGCAA‑C‑GTTTTAAACCGCCCCCCGCGGGTTTGTTCTACTCGGGAGA‑gtg > 3:519425/1‑150 (MQ=17) cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑gtg‑t < 2:1147528/151‑1 (MQ=255) cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑gtg‑t < 3:363982/151‑1 (MQ=255) cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑gtg < 1:1660441/150‑1 (MQ=255) gAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTCCCCCCCCCCC‑CCCCGGGCGTTGGCTTTCAA‑C‑CTTCAAAACCGCCCCCCGGGGAgtttttccattccgga > 2:1169611/1‑131 (MQ=12) aaaaGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCCGCCCCCCCCCC‑CCCCGGCCGTTTGTTCTCAA‑A‑GTTTAAAACCGACCCCCCCGGGTTTTGCCTACCCGGGcga‑g > 1:1549928/1‑146 (MQ=255) aaaGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCa < 2:1485018/151‑1 (MQ=255) gCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCCCCC‑CCCCGGCCCTTGCTTCGCAA‑C‑GTTCAAATCCCCTCCCCGCGGGTTTTTTCTACTCGGGGGG‑GGG‑TTCAcc > 1:759660/1‑150 (MQ=17) cAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGa < 2:1250142/151‑1 (MQ=255) aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCTGCCCCCCACCC‑TCCCGGCCGTTGCTTCGCAA‑C‑ATTCAAATTCGCTCCCCGCGGGGTTGTCCCACTCCGGGGA‑GGG‑TTTAcc > 2:1453685/1‑148 (MQ=255) aaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGacaa < 1:1235882/151‑1 (MQ=255) aaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCCGCCCCCCCCCC‑CCCCGGGCGGTGCTTTGCCA‑C‑GTTCAAATCCCCCCCCCGCGGGTTTTTCCTTCTCcgggggggggttccc > 4:24169/1‑133 (MQ=9) aaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCCGCCCCCCCCCC‑CCCCCGCCGTTGCCTCGCAA‑C‑ATTCAAATCCCCCCCCCGCGGGGTTTTCCTTCTCCGGgga‑ggggtttcccacaa > 1:527984/1‑137 (MQ=9) aGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGT‑T‑CTCCCGCCCGCCACCC‑TCCGGGCCTATTCTTTGCAA‑A‑GGTCAAAACCCCCCCCCGCCGGATTGTCCTACTCGGGCGA‑GAG‑TTcgac > 2:565926/1‑141 (MQ=255) cATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAacaaca < 2:1016496/151‑1 (MQ=255) ccTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCCCCC‑CCCCGGCCGTTGCTTCGCAA‑C‑GTTCAAATTCACCCCCCGCGGGTTTGTCCTACTCCGGAGA‑GTG‑TTCACCCacaaaaaaaa > 2:496903/1‑146 (MQ=14) cTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTGCTGCCCCCCCCCC‑CCCCCGCCGTTTCTTCGCAA‑C‑GTTCAAATCCCCTCCCCGCCGGTTTGTCTTCCCCGGGGGA‑GGG‑TTCACCCCCAaaccaccaac > 1:989358/1‑146 (MQ=9) cTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCCCCCCCC‑CCCCGGCCCTTGCTTTTCAA‑C‑GTTTCAATCCCCCCCCCGCGGGGTTGTTCTAATCCGGGGG‑GGG‑GTTTCCGCCAAACAAAAGac > 4:572811/1‑149 (MQ=9) tCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑G‑GTCCTGGCCGCCCCCC‑CCCCGGCCGTTTTTTCGCCA‑C‑GCTCAAAATCGCCCCCCGCGGGTTTGTTCCTCTCCGGGGG‑GTG‑GTTACCTCCCAACAACACAa‑aaa > 1:288369/1‑150 (MQ=255) tCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑aaa < 1:1477148/150‑1 (MQ=255) ggATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACa < 2:1215022/151‑1 (MQ=255) aTGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACaaa < 2:466164/151‑1 (MQ=255) tGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACaaa < 1:927922/150‑1 (MQ=255) tGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCCCCCCCC‑CCCCGGCCGGTGCTTTGCAA‑A‑GTTCAAATCCGCCCCCCGCGGGTTTGTCCTACTCCGGAGA‑GGG‑GTTACCCACAAAAAAAAGAT‑AAAACaaa > 3:501071/1‑150 (MQ=14) ggCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAg < 1:731846/151‑1 (MQ=255) ccTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCTGCCCGCCACCC‑TCCCGGCCGGTGGTTCGCCC‑C‑GCTTAAAACCGCCCCCCCCGGGGTTGTCCTACTCCGGGGAGGGG‑TTACCCCAAAAACAA‑AGAT‑AAAACaaaaa > 1:1454207/1‑148 (MQ=9) tttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCCCCCCCC‑CCCCGGCCGGTGCTTTGCAA‑A‑GTTCAAAACCGCCCCCCGCGGGTTTGTCCTACTCGGGAGA‑GGG‑TTCACCGACAAACAAAAGAT‑AAAACAAAAAGccc > 2:1439711/1‑151 (MQ=14) tCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGCCTCCCCCCCACCC‑ACCCGGCCGCTTCGTCCCCA‑CGGTCCAAACCCCCTCCC‑GCGGGTTTGTGCTTCTCTGTAGA‑GAGATTCA‑CGACAAACAAAAAAT‑Aaaaaaaaaacacc > 2:1322396/1‑144 (MQ=2) cGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GGTCCGCCCCCCCCCC‑TCCCGGCCGCTGCTTTTCAACC‑GTTC‑AATCCGCCCCCCGCGGGGTTGTCCCACTCCGGGGG‑GTG‑TTCTCCGCCAAAAAACAGAT‑Aaaaaaaaaagacc > 1:361850/1‑143 (MQ=255) gCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTc < 2:253254/151‑1 (MQ=40) gCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑CCCCGGCCGGTTCTTTCCAA‑A‑GGTTCAATTCGCCCCCCGCGGGCTTGTCCTACTCTGGGGG‑GGG‑GTTACCCACACACAACAAAT‑Aaaaaaaaaaaccc > 1:627156/1‑142 (MQ=2) cTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCCGCCCCCCCCCC‑TCCCGGCCGGTGCTTCGCAA‑A‑GTTCAAATCCCCTCCCCGCGGGGTTGTCCTACTCCGGAGA‑GGG‑TTTACCCCCAAAAAACAGAT‑AAAACAAAAAGCCCAGTCt > 3:430016/1‑151 (MQ=11) gatttgatGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTc < 1:1208384/150‑1 (MQ=39) tttgatGTCTGGCAGTTTATGGCGGG‑G‑GGGCTGCCCCCCACCC‑TCCCGGCCGGTGCTTTGCAA‑C‑CTTTAAATCCGCTCCCCGCGGAGTTTTCCTACTCGGGGGA‑GTG‑GTTACCCACAAACAACAGAA‑AAAACAAAAAGGCCACGCTTcc > 4:220797/1‑149 (MQ=255) tgatGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGAc < 2:92743/150‑1 (MQ=38) gatGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTg < 3:230405/151‑1 (MQ=38) tGTCTGGCAGTTTATGGCGGG‑CGGCCCTCCCCCCCCCCC‑CCCCGGCCGTGGTTTGCCAA‑C‑CTCCAAAACC‑CCCCCCGCGGGCTTGTTCCTCCCCGGAGA‑GGG‑GTCTCCCCCCAACAAAAGATAAAAAAAAAAGGCCCAGCCTTc > 4:405043/1‑144 (MQ=255) gTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAg < 2:28296/150‑1 (MQ=38) gTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGc < 3:468045/151‑1 (MQ=37) ggCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCttt < 4:76005/151‑1 (MQ=35) ggCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCA‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCt < 2:232006/149‑1 (MQ=25) aTGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTa < 1:300732/150‑1 (MQ=38) tGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAtt > 2:665928/1‑151 (MQ=38) ggcggg‑c‑gTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt < 1:1174620/151‑1 (MQ=38) ggcggg‑c‑gTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt > 1:10243/1‑151 (MQ=38) ggcggg‑c‑gTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt < 2:1733514/151‑1 (MQ=38) ggcggg‑c‑gTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAtt < 4:70483/150‑1 (MQ=38) cggg‑c‑gTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTg > 2:1629692/1‑150 (MQ=38) g‑c‑gTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGt > 2:1425402/1‑151 (MQ=39) ccTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTgg < 2:682236/151‑1 (MQ=40) ccTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTgg > 3:132042/1‑151 (MQ=40) gCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc < 2:817323/149‑1 (MQ=40) gCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 2:1292737/1‑149 (MQ=40) gCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 1:255601/1‑149 (MQ=40) gCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCa < 2:1347233/150‑1 (MQ=40) cGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTc < 1:343093/151‑1 (MQ=40) ccACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTcc < 1:565843/150‑1 (MQ=40) cACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTTCTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCt < 2:1114745/151‑1 (MQ=255) c‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTATTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTActc > 1:1337015/1‑151 (MQ=255) tCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTActct > 2:871947/1‑151 (MQ=40) tCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTActc > 1:650939/1‑150 (MQ=40) cGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCg > 1:1262986/1‑151 (MQ=40) | CCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGG‑C‑GTCCTGCCCGCCACCC‑TCCGGGCCGTTGCTTCGCAA‑C‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGA‑GTG‑TTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCG > NC_000913/3423147‑3423446 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |