| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,423,294 | 0 | T | C | 42.9% | 153.6 / 42.0 | 112 | intergenic (+100/+129) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| Reads supporting (aligned to +/- strand): ref base T (17/47); new base C (48/0); total (65/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.59e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 113 total aligned reads displayed.
CCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTAC > NC_000913/3423147‑3423441 | ccTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTcc < 1:132058/150‑1 (MQ=255)ccTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTcc < 2:179952/150‑1 (MQ=255) aaaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCC‑CCCCCCcgg > 1:446860/1‑150 (MQ=255) aaaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCA‑CCCCCCcgg > 1:357808/1‑150 (MQ=255) aaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTGCTCCCCGCCA‑CCCTCCcgggc > 2:1049227/1‑149 (MQ=255) aaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGcc < 2:997381/151‑1 (MQ=255) aTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTTCCCCCCA‑ccccccc > 3:165736/1‑145 (MQ=255) tgagCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCA‑CCCCCCCGGcc > 3:57744/2‑147 (MQ=255) gagCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTGCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGt < 2:120498/148‑1 (MQ=255) cGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCGCCCCCCC‑CCCCCCCGGCCGtt > 3:408510/1‑142 (MQ=255) gAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCGCCCCCCC‑CCCCCCCGGCCGGTGGtt > 2:718725/1‑145 (MQ=37) cATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCGCCA‑CCCCCCCCGCCCGTGCTTCGCaccaatgt > 2:855206/1‑144 (MQ=255) aTTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCCGCCTGCCCGCCC‑CCCTCCCGGGCGGTTCTTTTCCAC‑GTT‑c > 3:233608/1‑149 (MQ=255) tttttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCC‑CCCCCCCGGCCCGTGCTTCGCCAC‑GGT‑cca > 2:1072079/1‑148 (MQ=25) ttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCC‑CCCCCCCGGGCGGTGCTTTGCAAC‑GTT‑TCAATcc > 1:622190/1‑151 (MQ=25) tATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATcc < 2:750798/150‑1 (MQ=255) tATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCC‑CCCCCCGGGCCGTTGCTTCGCAAC‑GTT‑Caaa > 1:329611/1‑147 (MQ=255) tATCGCAGGTAATCCATTAATGGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATcc < 2:366659/150‑1 (MQ=255) aTCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCC‑CCCCCCCGGGCGTTGCTTCCCAAC‑GTT‑CAAATcccc > 1:256768/1‑149 (MQ=21) cGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCt < 1:1126530/150‑1 (MQ=255) gCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTcc < 3:199626/151‑1 (MQ=255) gCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTcc < 1:272451/151‑1 (MQ=255) gCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCTCCCGCCC‑CCCCCCCGGCCGCTGTTTCGCAAC‑GTT‑CAAAACCGCTcc > 4:146006/1‑151 (MQ=21) cAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCC‑CCCCCCCGGCCGGTGCTTCGCCAC‑GTT‑CAAATCCCCTccc > 1:541116/1‑151 (MQ=21) aGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCGCCCCCCCA‑CCCCCCCGGCCGCTGCTTTCCAAA‑GTT‑CAAAAccccccccc > 2:143438/1‑150 (MQ=21) gTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCC‑CCCCCCCGGCCCCTGCTTTGCAAC‑CTT‑CCAATccccccccc > 2:260245/1‑148 (MQ=21) gTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCA‑CCCTCCCGGCCCTTGCTTCGCAAC‑CAT‑CAAATCCGCTccc > 1:563374/1‑148 (MQ=21) aTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCCCCCGGCCGTTGCTTCGCAAC‑CTT‑CAAATCCCCTCCccgcgg > 1:390335/1‑150 (MQ=255) ccATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCTCCCCCCC‑CCCCCCCGGCCGTTGCCTCGCCAC‑GTT‑CTAAACCGCTcccccgcgggt > 2:497229/1‑143 (MQ=18) aTTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCCGGGCGTTTCTTTGCAAC‑CTT‑CAAAACCGCTCCcggcggggtt > 4:454057/1‑146 (MQ=18) aTTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCC‑CCCCCCCGGCCGCTGCTTCTCCAC‑CTT‑CTAATTCTCTCCCGCCGGGttt > 3:313078/1‑150 (MQ=255) aTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCt < 4:412655/151‑1 (MQ=255) tGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCC‑CCCCCCCGGCCGGTGCTTTGCCAA‑GTT‑TAAAAACCCTCCccgcggggtttttc > 1:188467/1‑140 (MQ=255) aaTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCC‑CCCTCCCGGCCGTTTCTTTGCCAC‑CTT‑CAAATCCCCTCCCCGCGGGTTTTTCCTACTc > 3:168649/1‑151 (MQ=18) ttAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGTCTGCCCCCCC‑CCCCCCCGGCCGTTGCTTTCCAAC‑GTT‑TAAATCCCCCCCCCGCGGGGTTGTcc > 3:49694/1‑142 (MQ=255) tAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCA‑CCCCCCCGGCCCGTGCTTTGCCAA‑GTT‑TAAAAACGCCCCCCGCGGGATTGTcc > 1:880983/1‑141 (MQ=17) tAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTCCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTCCTGCCCGCCC‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGga < 3:21443/150‑1 (MQ=255) aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTCCCGCCCCCCC‑CCCCCCCGGCCGTCGCCTCTCCAC‑ATT‑TCAATACGCTCCCCGCGGGGTTGttcctccccgg > 2:1003514/1‑138 (MQ=255) aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGgaga < 2:1275401/151‑1 (MQ=255) ttCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCC‑CCCCCCGCGCCCTTTCTTCTCAAA‑GCT‑TAAATCCCCCCCCCGCCGGTTTCTCCTtctctcg > 3:365919/1‑143 (MQ=255) cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCC‑CCCCCCCGGCCGTTGCTTTGCAAC‑GTT‑CAAATCCGCCCCCCGCGGGTTTTTTCTACTCcgggg > 1:75640/1‑144 (MQ=17) gAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGtt < 2:218355/151‑1 (MQ=255) aaaaGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTTCCCCCCA‑CCCCCCCGGCCGTTGCTTCGCAACAGTT‑C‑AATCCCCCCCCCGCCGGGTTGTCCTCCTCCGGggaggg > 4:403436/1‑146 (MQ=17) aGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCCCCCCCCC‑CCCCCCCGGCCGTTGCTTCGCAAA‑CTT‑TCAATCCGCTCCCCCCGGGTTTGTCCTACTCCGGCGGGGGTTCAcc > 2:229642/1‑151 (MQ=255) gCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCg < 1:1224605/151‑1 (MQ=255) cAAAAAGGCCTTCCTTTCGGATGGCCTTTCGCTCGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCTCCGa < 2:204466/151‑1 (MQ=255) cAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGa < 3:280501/151‑1 (MQ=255) cAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCA‑CCCCCCCGGCCGTTGCTTCGCAAA‑GTT‑CAAAACCGCCCCCCGCGGGTTTTTCCTTCTCCGGGGAGTGTTTAcc > 4:108029/1‑149 (MQ=17) aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCCCCCGGCCGTTGCTTCGCCAA‑GTT‑CAAATCCCCTCCCCGCGGGTTTTTCCTACTCGGGAGAGGGTTTAcc > 4:290265/1‑148 (MQ=17) aaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTCCTGCCCCCCA‑CCCCCCCGGGCGGTGCTTCGCAAC‑GCT‑CAAAACCCCCCCCCGCGGGTTTGTTCTTCTCcgggggggggt > 2:1171761/1‑135 (MQ=255) aaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGacaaa < 1:209576/151‑1 (MQ=255) ggCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGacaaac‑a < 2:357748/151‑1 (MQ=255) gCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCTCCCCCCC‑CCCCCCCGGCCGTTGCTTTGCAAC‑CGT‑CAAAATCCCCCCCCGCGGGTTTTTCCTTCTCCGGGGAGGGTTCACCCacaaac‑a > 1:840357/1‑150 (MQ=255) ccTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGa < 2:975978/150‑1 (MQ=255) tttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCC‑CCCCCCCGGCCGTTTCTTCCCAAC‑GTT‑TAAATCCCCCCCCCGCGGGTTTTTCCTACTCGGGGGGGGGTTCTCCCACCAac‑aacaaaaa > 2:1002501/1‑146 (MQ=9) tCGGGTGGCCTGACGGTTGATTGGGGGTCTGGCAGTTTATGGTGGGGGTCCTGCCCGCCC‑CCCTCCGGGCCGTTGCTTCGCAGC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGAt < 2:1259152/147‑1 (MQ=14) cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATaaaa < 1:1266490/150‑1 (MQ=255) cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATa < 2:1233511/147‑1 (MQ=255) ggATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACa < 3:423581/151‑1 (MQ=255) ggATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTTCCCCCCC‑CCCCCCGGGGCGGTGGTTCGCAAA‑GTT‑CAAAACCGCTCCCGGCGGGGTTTTCCTACTCGGGGGAGGGTTCACCGACAAAC‑AACAGATaaaa > 1:918582/1‑149 (MQ=14) ggATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCGCCC‑CCCCCCCGGGCCTTTCTTCTCAAA‑GTT‑CAAATCCCCCCCCCGCGGGGTTGTCCCACTCTGGGGAGGGTTTACCCACCaaa‑aaaaaaaaaaaa > 2:654333/1‑149 (MQ=255) gATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACaa < 2:421768/151‑1 (MQ=255) aTGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCTCCCCCCA‑CCCTCCCGGCCGTTGCTTCGCCAC‑CTT‑CAAATCCCCCCCCCGCGGGTTTGTTCCTCTCGGGAGAGGGTTTACCGCCaaaa‑aaaaaaaaaaaaaa > 1:1136823/1‑150 (MQ=9) gCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCT‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAg < 2:18207/150‑1 (MQ=255) ccTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCACCCCCCCGGGCCG‑TGCTTCTCGAA‑CTT‑CAAATCCCCTCCCCGCGGATTTGTCCTTCTCTGGGGAGGGTTCACCCCCCAAA‑AAAAAATAAAACaaaa > 1:758783/1‑148 (MQ=255) ccTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCC‑CCCCCCCGGCCGGTGCTTCGCAAA‑CTT‑TCAATCCGCCCCCCGCGGGCTTTTCCTTCTCGGGGGGGGGTTCTCCCACAAACAAACAaaaaaaaaaaaa > 2:1030548/1‑149 (MQ=9) ccTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTCCCCCCCC‑CCCCCCCGGCCGGTGCTTTGCAAC‑CTT‑TAAATCCGCCCCCCGCGGGTTTGTCCTTCTCCGGGGAGGGGTTACCCACCAAC‑aaaaaaaaaaaaaaaaa > 1:261699/1‑148 (MQ=9) ttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCC‑CCCCCCCGGCCGGTTCTTCGCAAA‑GTT‑CAAATCCGCTCCCCGCGGGTTTTTCCTTCTCCGGAGAGGGTTTACCCCCAAAC‑AAAAGAAAAAAAAAAAAGccc > 1:592315/1‑150 (MQ=9) ttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCA‑CCCCCCCGGCCGTTGCTTCGCAAC‑GTTCCAAATCC‑CCCCCCGCGGGTTTTTCCTACTCCGGAGAGGGGTTACCGACAAAA‑AACAGATAAAACAAAAAGccc > 1:498564/1‑150 (MQ=14) cGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGGCCCCCA‑CCCCCCCGGCCGCTGCCTCGCAAC‑ATT‑CAAAACCGCTCCCCGCCGGGTTTTCCTACTCCGGCGGGGGGTTACCGCCAAAC‑AAAAGATAaaaaaaaaagacc > 2:1082448/1‑143 (MQ=2) tgatttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCt < 1:897819/149‑1 (MQ=40) gatttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTcc < 2:619219/151‑1 (MQ=39) gatttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTcc < 1:716756/151‑1 (MQ=39) gatttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTcc < 2:308865/151‑1 (MQ=39) gatttgatGTCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCA‑CCCCCCCGGCCGGTTCTTTGCAAC‑GTT‑CAAAATCGCCCCCGGCGGGTTTGTCCTACTCGGGGGAGTGTTTCCCCACCAAA‑AACAACAAAAAAAAAAAGCCCAGCCTTcc > 2:968094/1‑151 (MQ=255) atttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCg < 4:219035/151‑1 (MQ=38) tttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCCCCCGGCCGGTGCCTCGCAAC‑GTT‑TAAAACCGCTCCCCGCGGGTTTTTCCTACTCGGGAGAAGGTTCACCCACCAAC‑AACAGGTAAAACAAAAAGcc > 1:554541/1‑140 (MQ=11) atGTCTGGCAGTTTATGGCGGGGGGCCCTCCCGCCC‑CCCCCCCGGCCGTTGTTTCTCAAA‑GTT‑TCAAACCCCTCCCGGCGGGTTTTTCCTTCTTCGGGGAGGGGTTACCGCCAAAC‑AACAGATAAAAAAAAAAACCCAGTCTTTCg > 2:212797/1‑146 (MQ=255) atGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGa < 2:546743/151‑1 (MQ=38) atGCCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCC‑CCCCCCCGGCCCTTGCTTCGCCAC‑GTT‑CAAAACCGCCCCCCGCGGGTTTTTTCCACTCAAGAGAGCGGTCACCCCCAAAA‑AAAAAAAAAAAAAAAAAGGCCCGGCTTCCCAc > 1:27714/1‑148 (MQ=0) tCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCC‑CCCCCCCGGCCGTTGATTCGCAAA‑GTT‑TCAATCCGTTCCCCGCGGGTTTTTTCTATTTCGGACGGTGTTTAACGACAAAA‑AACAAAAAAAACAAAAAGCCCAGTCTTCCgtgtgacgc > 1:136390/1‑143 (MQ=2) ggCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCtt < 2:330381/150‑1 (MQ=35) cAGTTTATGGCGGGCGTCCTGCCCCCCC‑CCCCCCCGGCCGTTGCTTTGCAAC‑CTT‑CCAAACCCCCCCCCGCGGGTTTTTCCTACTCGGGGGAGGGGTCACCGACAAAC‑AACAGAAAAAACAAAAAGACCAGTCTTTCCACTGCGCCtttt > 2:306704/1‑150 (MQ=2) gTTTATGGCGGGCGTCCTGCCCGCCC‑CCCCCCGGGCCGGTGCTTTGCAAC‑GCT‑TTAATCCCCCCCCCGCGGGGTTTTTCTTCTCAGGGGAGCGTTTACCCCCAAAA‑AAAAAAAAAAAAAAAAAACCCCCGCTTTCTGCTGAGCCCTTTGt > 2:120643/1‑150 (MQ=0) gTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtt < 1:253134/151‑1 (MQ=38) aTGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAt < 3:115381/151‑1 (MQ=38) ggcgggcgTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt > 2:1077025/1‑151 (MQ=38) cgggcgTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGa < 3:18271/151‑1 (MQ=38) gggcgTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGAt < 2:502623/151‑1 (MQ=38) ccTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCta < 2:1031657/150‑2 (MQ=255) ccTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTgg > 3:88254/1‑151 (MQ=40) tGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 4:443834/1‑150 (MQ=40) gCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 3:232196/1‑149 (MQ=40) gCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 4:435711/1‑149 (MQ=40) gCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc < 2:1282703/149‑1 (MQ=40) gCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAg < 4:47763/151‑1 (MQ=40) gacA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGACCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTcc > 3:246117/3‑151 (MQ=255) gCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTcc > 2:72164/1‑151 (MQ=40) a‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTGTGTTTTATTTGATGTCTGGCAGTTCCCTa < 2:79767/151‑1 (MQ=255) cccTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTAc < 1:678176/151‑1 (MQ=40) | CCTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCA‑CCCTCCGGGCCGTTGCTTCGCAAC‑GTT‑CAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAAC‑AACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTAC > NC_000913/3423147‑3423441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |