| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,880 | 0 | T | C | 43.5% | 104.1 / 17.1 | 70 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| Reads supporting (aligned to +/- strand): ref base T (31/8); new base C (0/30); total (31/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.65e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGA > NC_000913/357732‑358024 | tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTcc > 2:1083342/1‑151 (MQ=255) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTcc < 3:1044853/150‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTccgcc > 3:330078/1‑151 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTccgcc > 2:1072839/1‑151 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTccgccg > 2:264657/1‑151 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTccgccg > 2:577806/1‑151 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGca > 2:991986/1‑150 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGcaac > 3:490141/1‑150 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAc < 3:1425133/151‑1 (MQ=255) aGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAcc < 2:896948/151‑1 (MQ=255) aGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAcc < 2:1446198/151‑1 (MQ=255) gCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAcc < 2:1232859/150‑1 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccgcc < 3:24959/151‑1 (MQ=255) ccaataaGGCATTCCCAGCCGCAGCCTTGTGTCAGCGGCTACCGTGA‑TTCATTCCCGCC‑AA‑CACCCGCGCATTTATCCAACGCCTTGTGAAAAAAT‑CCCTCC‑GGGGCGGCTGTCTCCCAGCTTTTTTTCCGCCGCAACAAAAccgccg < 3:976774/142‑1 (MQ=18) tCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTtctctc > 2:1422117/1‑151 (MQ=255) aGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTcc > 3:303283/1‑150 (MQ=255) aGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTcc > 2:1591011/1‑150 (MQ=255) gCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCagt > 2:115315/1‑151 (MQ=255) gCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCagt > 3:678947/1‑151 (MQ=255) aaTTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCagt > 3:1626660/1‑149 (MQ=255) aTTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCagtagt > 2:619217/1‑151 (MQ=255) aTTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCagtagt > 2:752390/1‑151 (MQ=255) ttCCAGCCGCAGCCCTGTGTCAGCGGCTCCCGTGA‑TTCATTCCCGCC‑AA‑CACCCGCGCTTTTACCCAACGCCATGTGAAAAAAT‑GCCTTC‑GCGGCGGCTGTCTCCCATTTATTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCagtagt < 2:394864/150‑1 (MQ=18) ttCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTg > 3:1270600/1‑151 (MQ=255) ttCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTg > 3:536020/1‑151 (MQ=255) gCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggg > 3:636234/1‑151 (MQ=255) ccGCAGCCTTGTTCCAGCGCCTCCCGTG‑‑TTCCTTTCCCCCAAA‑CACCCGCGCTTTTACCCACCGCAGTGTGAAAAAAT‑GCCTTC‑GGGGGGGCTGTCTGCCGGTTTTTTTCCCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCgggg < 3:70444/151‑1 (MQ=255) ccGCAGCCTTGTGTCGGGGCCTCCCGTTA‑TTCTTCCCCCCC‑AA‑CACCCCCTCTTTTCCCCACCGCCTTGCAAAAAAAT‑GCCTTC‑GGGGGGTCTGTCTGCCTGCTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCgggg < 3:165028/151‑1 (MQ=255) ccGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggg > 2:94718/1‑151 (MQ=255) cGCAGCCTTGTGCCGGCGGCT‑CCGTTA‑TTTCTTTCCCCC‑AACCACCCGCGCTTTTCCCAACCCCCTTTTAAAAAAAT‑GCTTCC‑GCGGCGGTTGTCGCCCACTTTTTTTCCCGCCCCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGc < 2:475221/151‑1 (MQ=255) cGCAAACCTGTGGCAGCGCCT‑CCGTTATTTCTTCCCCGCA‑AA‑CAACCGCCCTTTTTCCCACCGCCTTGTCCAAAAGT‑GCTTCG‑GGGGCGGCTGTGTGCCGGTTTTTTTCCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGc < 3:71883/151‑1 (MQ=255) gCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggg > 2:784155/1‑149 (MQ=255) gCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggg > 2:995855/1‑149 (MQ=255) gACCTGTGTCGGCGCCTCCCGTGT‑TTCATTCCCGCC‑AA‑CACCCGCGCATTTACCCACCGCCTTGTGAAAAAAT‑GCCTTC‑GCGGGGGTTGTCGCCCAGTTTTTTTCCCCCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCaa < 2:903562/149‑1 (MQ=255) tgtgTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggg > 2:396177/1‑142 (MQ=255) tgtgTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGA‑Gaa > 2:322155/1‑150 (MQ=255) tgggccgggggCTCCCGTGT‑TTCTTTCCCCCC‑AA‑CACCCGCGCTTTTACCCACCCCCATGTGAAAAATT‑CCCTCC‑GCGGCGGTTGTCTGCAAGTTTTTTTCCCGCCACAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑Gaa < 3:148192/141‑1 (MQ=255) cAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGCAGA‑Gaaaaaaa > 2:669123/1‑146 (MQ=255) gCGGCTACCGTGT‑TTCATTCCCCCC‑AA‑CCCCCGCGCTTTTCCCCACCGCCATGGAAAAAAAT‑GCCTGC‑GGGGGGGCTGCCCGCCATTTTTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGc < 3:1105348/148‑1 (MQ=255) ggCCACCGTAA‑TTTTTTCCCGCC‑AA‑CACCCGCGCTTTTATCAACCGACTTGTGAAAAAAT‑GCCTTC‑GCGGGGGTTGTCTGCCATTTTTTTTGCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑tt < 2:1397977/148‑1 (MQ=255) gCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGCAGG‑Gaaaaaaaattt > 2:1147582/1‑141 (MQ=25) ccgtgttttCTTTTCCGCC‑AA‑CACCCGCGCATTTGCCAACCGCCATATACAAAATT‑GCCTCC‑GCGGCGACTCCCTCCAACCTTTTTTCCCGCCACAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTaa < 2:1067470/140‑1 (MQ=255) ccGTTA‑TTCTTTCCCGCC‑AA‑CACCCCCCCATTTATCCACCCCATTGGGCAAAAAC‑GCCTCC‑GCGGCGGTTGTCTCCCAGCTTTTTTCCCGCCGCAATAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑t < 2:1634742/142‑1 (MQ=255) cGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGAAGA‑Ggaaaaagatatagca > 3:991055/1‑136 (MQ=25) ttCATTCCCGCC‑AA‑CACCCGCGCTTTTACCCACCGCCATGTGAAAAAAT‑GCCTCC‑GCGGCGGCTGTCTGCCAGTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCAtg < 2:884911/150‑1 (MQ=255) cc‑AA‑CACCCGCGTTTTTACCAACCGCCATGTAAAAAATT‑GCCTGC‑GGGGGGGCTTTCTGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCaa < 2:1595156/151‑1 (MQ=255) cccGCGCTTTTACCCACCCCAATGTGAAAAAAT‑GCCTCC‑GCGGGGGCTTTCTCCCAGTTTTTTTCCCGCCGAAAAAAACCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATc < 3:1335253/146‑1 (MQ=255) gcgcTTTTACCAACCGCAATGTG‑AAAAAA‑GCCTTCGGCGGCGGCTGTCTCCCAGTTTTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCg < 2:377633/145‑1 (MQ=255) cgtaTTTACCCACCCCCTTGT‑CAAAAATGGCCTTC‑GGGGCGGCTTTCTGCCAGTTTTTTTCCCCCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTgg < 3:1023012/148‑1 (MQ=255) ccacccccATGTAAAAAAAT‑GCCTCC‑GGGGCGGCTGTCGCCCAGTTTTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAtg < 3:1157216/144‑1 (MQ=255) cAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGAAGA‑GAAAAAAA‑TTTTAACCCCCCCTGTTTGGTGGGGAACGCTGCTgggtaaaa > 1:10347/1‑141 (MQ=25) cGCCATGTGAAAAAAT‑GCCTCC‑GCGGCGGCTGTCTCCCAGTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGaa < 2:52696/151‑1 (MQ=255) gCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGCAGG‑GAAAAAACTTTTAAACCCG‑CCTATTTTGTGGGGAACGCTGCTGGttgcaa > 2:730861/1‑138 (MQ=21) tgCAAAAAT‑CCCTTG‑GCGGCGGCTGTCTGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGaa < 2:155345/150‑1 (MQ=255) gtttaataaggCCCTC‑GCGGCGGCGGTCTGCCAGCTATTTTTCCGCCATAAGAAACCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAAGCGCTGCTGGTAACAATGTGGAAAGGGaa < 2:1379316/141‑1 (MQ=255) aaaatT‑CCCTCC‑GCGGCGGCTGTCTGCCAGTTTTTTTCCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTg < 2:922209/150‑1 (MQ=255) aaaagT‑GCCTTC‑GCGGCGTCTGCCGGCCGGTTTTTTTCCCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTg < 3:1534811/150‑1 (MQ=255) aaaaaT‑CCCTTC‑GGGGGGGTTGTCTGCCAGTTTTTTTCCCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAggg < 2:660253/145‑1 (MQ=255) aatt‑GCCTCC‑GCGGGGGTTGTCTCCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTgcgg < 2:506257/148‑1 (MQ=255) aact‑GCCTCG‑GCGGCGGCTTCCTGCAAGTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAg < 3:1343315/143‑1 (MQ=255) aaaaccccTCC‑GGGGCGCCTGTTTGCCATCTTTTTTCCCGCCCAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTgcg < 2:1071955/145‑1 (MQ=255) aattcccTTC‑GGGGCGGTTTTCTCCAAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTgcgg < 3:1253449/146‑1 (MQ=255) aT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAAA‑GAAAAAAA‑TTTTAACCCCCCCTGTTTTGTTGGGAACGCCGCTGGGTACAAAGTGGGAAGGGGAgggggggg > 2:813301/1‑144 (MQ=255) aT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCGAGAGGAAAAAAT‑TTTAACCCCCCCAT‑TTTTGTGGGGAACCCTGCTGGGAAAAAAATGGGAAggggaaggggg > 2:1181885/1‑141 (MQ=255) ccTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGAAGA‑GAAAAAAC‑ATTAAATCCGCCATGTTTTGTGGGAAATCCTGCCGGTGAAAAAATGGGAAgggggggggggggg > 2:554405/1‑138 (MQ=255) cctttttttttcCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCgcgc < 3:847256/142‑1 (MQ=255) ccAGTTTTTTTCCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTa < 2:927245/151‑1 (MQ=255) ccAGTTTTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAAcc < 3:1442934/145‑1 (MQ=255) ccAGTTTTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcgcg < 2:1199181/148‑1 (MQ=255) ccAGTTTTTTTCCCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCGGCTCCAGAACCGCGCTa < 2:166166/151‑1 (MQ=255) ccAGTTTTTTTCCCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcg < 2:490176/146‑1 (MQ=255) caattttttttcCCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGaa < 3:1144159/136‑1 (MQ=255) caagtttttttcCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcgc < 3:881320/140‑1 (MQ=255) ttttcCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGAGCGGCGAATCAGCTCCAGAACCGCGCTAATTGa < 2:457546/149‑1 (MQ=255) ttttcCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcgcg < 3:371708/141‑1 (MQ=255) | TCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGA‑TTCATTTCCGCC‑AA‑CAACCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTTC‑GCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGC‑TTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGA > NC_000913/357732‑358024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |