Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,665,7020CA52.0% 62.2 / 152.3 99A37S (GCG→TCG) gadXacid resistance regulon transcriptional activator; autoactivator
Reads supporting (aligned to +/- strand):  ref base C (38/9);  new base A (0/51);  total (38/61)
Fisher's exact test for biased strand distribution p-value = 6.29e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.00e-11

GTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAAT  >  NC_000913/3665553‑3665851
                                                                                                                                                        |                                                                                                                                                         
gTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCa                                                                                                                                                          >  2:648337/1‑151 (MQ=255)
  gatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCaaa                                                                                                                                                        >  1:735160/1‑151 (MQ=255)
     gaACGAGTAATGAATAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACTCACTTATCTACTCGAA‑TTTGGCTTGCATCCGCaaaaa                                                                                                                                                      >  2:1048814/1‑150 (MQ=255)
           gTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAACTTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑t                                                                                                                                              >  2:624198/1‑150 (MQ=255)
                      aCTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTaa                                                                                                                                >  1:1229192/1‑151 (MQ=255)
                       cTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTaaa                                                                                                                               >  2:584707/1‑151 (MQ=255)
                       cTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTaaa                                                                                                                               >  2:904098/1‑151 (MQ=255)
                       cTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTaaa                                                                                                                               >  2:31763/1‑151 (MQ=255)
                         tttttATGTGAATGAAGTTTTAATGCCTCCTCCTTGAACACGGGGAAAAAAAATAAAAGCGTGTCCCTTG‑ACACAAATAAAAAATTTTC‑AACACCCTTATCTCCTCGAA‑TTTGGTTTGCACCCGAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAAt                                                                                                                             <  1:261233/151‑1 (MQ=255)
                           tttATGTGCATAAAGTTTTAATGCCTCCTCCTTGAGCATGGGAAAAAAAAATGAAAGCGTGTCCCTTG‑ACACAAAAAAAAATTTTTC‑AACACTTTTATTTCATCAAT‑TTTGGCTTCAACCCGAAAAAACAA‑GG‑T‑C‑ACCGCCATTAAAATAg                                                                                                                           <  2:1162669/151‑1 (MQ=255)
                           ttaaTGTGCTAGAAGATTTAATCCCTCCCCCTTAAGCAGCGGGAAAAAAAATGAAAGCGTGTCCCTTG‑ACACAAATACAAAATTTCC‑ACCCCCCTTATCAACAAGAA‑TTTGGCTTGCACCCGAAAAAACCG‑GG‑T‑C‑ACCGCCATTAAAATAg                                                                                                                           <  2:402790/148‑1 (MQ=255)
                                  gCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATAtt                                                                                                                    >  2:710487/1‑151 (MQ=255)
                                     taaaGTTTAAATCCCCCCTCCTTGACAATCGGAAAAAATAATAAAAGCGTGTCCCTTG‑ACCCGAAAACAAAATTTCC‑ACCTCCCTTATCTACCTGAT‑TTTGTCTTCCATCCGAAAAAACCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCAc                                                                                                                 <  2:891422/149‑1 (MQ=255)
                                     tGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCa                                                                                                                  >  2:90364/1‑150 (MQ=255)
                                      aaaaaTTTAATGCCCCCCCCTTGAGAATCGGGAAAAAAAATGAAAGCGTGTCCCTTG‑ACACAAATAAAAAATTTTC‑AACACCCTTATCTACTCAAA‑TTTGGCTTGCACCCGAAAAAACCA‑GG‑T‑C‑CCCGCCATTAAAATAGCGATATTCAcc                                                                                                                <  1:304610/147‑1 (MQ=255)
                                         gATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGCATACAAAATTTTC‑AACACACTTATCTACTCGAC‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCAtt                                                                                                             >  2:1023557/1‑151 (MQ=255)
                                          aTTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTa                                                                                                            >  1:462843/1‑151 (MQ=255)
                                          aTTTAATCCCTCCCCCTTGAGCATGGGGAAAAAAAATAAAAGCGTGCCCCTTG‑ACAAGAAAAAAAAATTTTC‑AACACACTTATCTACTCAAA‑TTGGGCTTGCCCCCGAAAAACCCA‑GG‑T‑C‑CCCGCCATTAAAATAGCGATATTCACCAt                                                                                                              <  1:36055/149‑1 (MQ=255)
                                           tttAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTaa                                                                                                           >  2:1151091/1‑151 (MQ=255)
                                           tttAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTaa                                                                                                           >  1:481534/1‑151 (MQ=255)
                                            ttAATGCCTCCTCCTGGAGCATCGGGAAAAATAATGAAAGCGTGTCCTTTG‑ACACGAATAAAAAATTTTC‑AACACACTTATCTTCAAGAA‑TTGGGCTTGCACCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAc                                                                                                          <  2:885783/151‑1 (MQ=255)
                                             tattGCCCCCTCCTTGAGCAGCGGAAAAAATAATGAAGGCGTGTCCGTTA‑ACAAGAATAAAAAATTTTC‑AACACCCTTATCTCCTCAAT‑TTTGGTTGGCATCC‑AAAAAACCC‑GG‑TGC‑CCCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  2:170679/148‑1 (MQ=255)
                                             taagccctccccctTGAGCATCGGGAAAAATAATAAAAGCGTCCCCCTTA‑ACACAAATACAAAATTTTC‑AACCCATTTATTAACTAAAT‑TTTGCCTTCCACCCGCAAAACCAA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:46322/146‑1 (MQ=255)
                                             tAATGCCTCCTCCGTGAGAATGGGAAAAAAAAAGAAAAGCTTGTCCCTTG‑AAACGAATAAAAAATTTCC‑AACACTCTTATATACACGAT‑TTGGGCTTGCACCCAAAAAAACCA‑GG‑C‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  2:766753/151‑1 (MQ=255)
                                             tAATGCCCCCTCCTTGAGCATCGGGAAAAATAATGAAGGCGTGCCCTTGG‑ACAAGAATAAAAAATTTCC‑AACCCATTTATCTCCTCAAT‑TTGGGCTTGCACCCGAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  2:557069/151‑1 (MQ=255)
                                             tAATGCCCCCCCCTTGACCATCGGGAAAAATAATGAAAGCGTGTCCCTTA‑ACACAAATAAAAAATTTTC‑AACACCCTTATCTACTCGAT‑TTTGGCTTGCACCCCAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:1257865/151‑1 (MQ=255)
                                             tAATCCTTCTTCCTTGACCATGGTGAAAAAGAAGGAAGGCTTATCCTTAA‑ACACTAATACAAAATTTTA‑AACCCACTTATCTATTCGTA‑TTGGGCTTGC‑CCCCAAAAAACCC‑TG‑T‑CTACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  2:732103/151‑1 (MQ=255)
                                             tAATCCCTCCTCCTTAACCATCGGAAAAAAAAATGAAGGTTTTTCCCTTA‑CCACAAATAAAAATTTTCC‑AACACCCTTTTCTACCCAAT‑TTGGGCTTGCACCCAAAAAAACCG‑GG‑C‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  2:947743/151‑1 (MQ=255)
                                             tAATCCCCCCTCTTGGAGCACGGGGAAAAAAAATAAAAGCGTGCCCTTTG‑ACAAAAAAAAAAAATTTCA‑AACACATTTATCTACTAAAT‑TTTGGCTTCCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:60255/151‑1 (MQ=255)
                                             tAATCCCCCCTCCTTGAGCATGGGGAAAAAAAATAAACGCGTCTCCTTTG‑ACACAAAAAAAAAATTTTC‑AACCCCCTTACCAACTAGAA‑TTGGGTTCCCACCCGAAAAACCCG‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  2:589251/151‑1 (MQ=255)
                                             tAATCCCCCCTCCTGGAGCATGGGGAAAAAAAATAAAAGCGTTCCCCTTG‑ACAAAAATAAAAAATTTTC‑AACACACTTATCTTCTCGAT‑TTTGGCTTGCACCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:398747/151‑1 (MQ=255)
                                             tAATCCCCCCCCCTTGAGCATCGGGAAAAATAAAGAAAGCGTGCCCCTTG‑ACAAAAATAAAAAATTTTC‑AACACATTTATCTCCTCAAT‑TTTGGCTTGCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:370462/151‑1 (MQ=255)
                                             aaaTCCCTCCTCTTGGACCATCGGGAAAAAAAATGAAAGCGTTCCCTTTG‑ACACAATTACAAAATTTCC‑ACCCCCCTTATCTTCTCAAT‑TTTGCCTTCCACCCGCAAAACCCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  2:96577/150‑1 (MQ=255)
                                               atccctcctcctTGAGCATGGGGAAAAAAAATGAAGGCGTGCCCCTTG‑ACACAAAAAAAAAATTTTC‑AACCCACTTATCTACCCAAA‑TTTGGCTTGCATCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCAt                                                                                                       <  1:1070638/148‑1 (MQ=255)
                                                  cctcctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGt                                                                                                    >  2:280085/1‑151 (MQ=255)
                                                   cccctcttGGAGCATCGGGAAAAAAAATGAAAGCGTGCCCCTTG‑ACACAAAAAAAAAATTTAC‑AACACTCTTATCTCCGCAAA‑TTTGGCTTGCACCCGAAAAAACCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                                                                                   <  1:901161/149‑1 (MQ=255)
                                                    tcctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTga                                                                                                  >  1:53928/1‑151 (MQ=255)
                                                       tcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                                                                                               >  2:802349/1‑151 (MQ=255)
                                                       tcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                                                                                               >  2:233722/1‑151 (MQ=255)
                                                        cctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat                                                                                              >  1:521964/1‑151 (MQ=255)
                                                             accATGGGGAGAAAAAATAAAGGCGTGCCCCTGG‑ACAAAAATAAAAATTTTTA‑AACACACTTATCTACTCGAT‑TTTGGTTTGCACCCAAAAAACCAA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  2:1013059/149‑1 (MQ=255)
                                                             accATCGGAAAAAATAAAGAAAGCTTGTCCTTGG‑CCACAAAAAAAAAATTTAA‑AACACACTTATCTACGCGAA‑TTTGCTTAGCATCCGAAAAACCCA‑GG‑C‑A‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  1:847636/149‑1 (MQ=255)
                                                              caaaggggAAAAAAAATAAAAGCTTTCCCTTTG‑ACCCAAATACAAAATTTCC‑ACCCCATTTTTCTCCTCAAT‑TTTGGCTTGCACCCAAAAAAACCA‑GG‑G‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  1:398025/145‑1 (MQ=255)
                                                              acATCGGAAGAAATAATAAAAGCGTCTCCTTTG‑ACACAAATACAAAATTTAC‑AACACACTTATCTACTAAAA‑TTTGTCTTCCACCCGAAAAAACCA‑GG‑C‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  2:772007/149‑1 (MQ=255)
                                                               cctcgagaaaaaagatGAAAGCGTGCCCTTTG‑ACAGAAAAAAAAAATTTAC‑ACCCCCCTTATCTACTGGAA‑TTTGTCTTCCACCCAAAAAACCCG‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  2:1075075/135‑1 (MQ=255)
                                                               cATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTa                                                                                       >  2:752146/1‑151 (MQ=255)
                                                               aaTCGGGAAAAATAATGAAAGCGTGCCCTTTG‑ACAAAAAAAAAAATTTTCC‑ACCACCCTTCTCTACTCAAT‑TTTGTTTTGCACCCGAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  2:1182713/148‑1 (MQ=255)
                                                               aaTCGGGAAAAATAATAAAAGCGTGTCCTTTG‑ACAAAAATAAAAAATTTAC‑AACACACTTATCTCCTAGAT‑TTTGGTTTGCACCCAAAAAAACCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTa                                                                                       <  2:948242/150‑1 (MQ=255)
                                                                 tgggaaaaaaTAATAAAAGC‑TTTCCCTTGAACACAAATACAAAATTTTA‑ACCACACTT‑TTAACCAGAATTTTTTGTTGCACCAGAAAAAACAA‑GG‑T‑C‑CCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg                                                                                     <  2:208921/144‑1 (MQ=255)
                                                                  cGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACAAATACAAAATTTTC‑AACACACTTATCTCCTCAAT‑TTTGGTTTGCATCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt                                                                                    <  2:31546/151‑1 (MQ=255)
                                                                  cGGAAGAAATAATGAAAGCGTGTCCCTTG‑ACCCAAATACAAAATTTTC‑AACACACTAATCTACACGAA‑TTTGTTTTGCACCCTAAAAAACCG‑GA‑A‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt                                                                                    <  2:881907/151‑1 (MQ=255)
                                                                   gggAGAAATAATGAAAGCGTGCCCCTTG‑ACAAGAATAAAAAATTTTC‑AACACCCTTTTCTACCCAAT‑TTTGGTTTGCACCCGAAAAACCCG‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt                                                                                    <  2:539092/150‑1 (MQ=255)
                                                                   ggaaaaaaTAATAAAGGCGTTTCCCTTG‑ACAAAAATAAAAATTTTAA‑AACACATTTATCTACACAAT‑TTTGTTTTCCACCCAAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt                                                                                    <  2:757840/145‑1 (MQ=255)
                                                                    ggAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt                                                                                    >  1:1037809/1‑149 (MQ=255)
                                                                    ggAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTCTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt                                                                                    >  1:1019820/1‑149 (MQ=255)
                                                                           taataaAAGCGTGTCCCTTG‑ACACAAATAAAAAATTTCC‑AACCCCCTTATCTACTCGAT‑TTTGGTTTGCACCCAAAAAAACCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc                                                                           <  1:323529/151‑1 (MQ=255)
                                                                           taatGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa                                                                            >  1:232297/1‑150 (MQ=255)
                                                                             atGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACg                                                                          >  1:793398/1‑150 (MQ=255)
                                                                             atGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACg                                                                          >  1:438909/1‑150 (MQ=255)
                                                                             aaaaaaGCGTGTCCCTTG‑ACACAAATAAAAATTTTTC‑AACACTTTTATCTCCTCGAA‑TTTGGCTTGCACCCGAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGc                                                                         <  1:299592/148‑1 (MQ=255)
                                                                                  aGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTa                                                                    >  2:445955/1‑151 (MQ=255)
                                                                                  aGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTa                                                                    >  2:358548/1‑151 (MQ=255)
                                                                                      tttCCCTGG‑ACACAAAAAAAAAATTTAC‑AACACACTTATCAACACAAT‑TTTGGCTTCCATCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                 <  2:1114064/148‑1 (MQ=255)
                                                                                      ttccccTTG‑ACACAAATAAAAAATTTTC‑AACACACTTATCTCCTCGAT‑TTTGGCTTGCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                 <  1:90004/147‑1 (MQ=255)
                                                                                      ttccccTTG‑ACACAAATAAAAAATTTCC‑AACACATTTATCTCCTCGAT‑TTTGGCTTGCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                 <  1:935411/147‑1 (MQ=255)
                                                                                      tctCCCTTG‑ACAAGAATAAAAAATTTAC‑AACACTCTTATCTACTCAAA‑TTTGGCTTGAATCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                 <  2:569717/148‑1 (MQ=255)
                                                                                          ccTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCGATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTc                                                            <  2:43779/151‑1 (MQ=255)
                                                                                          ccTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAtt                                                             >  2:1134343/1‑150 (MQ=255)
                                                                                                 cacGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGt                                                      >  2:611621/1‑151 (MQ=255)
                                                                                                   caaaTAAAAAATTTTC‑AACACACTTATCCACTCAAT‑TTTGGCTTGCACCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAg                                                    <  1:976563/149‑1 (MQ=255)
                                                                                                    gaaaaaaaaaTTTTCAAAAAAACTTTTCTTCCCAAT‑TTTGGCTAGCAACCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATg                                                       <  1:1230147/142‑1 (MQ=255)
                                                                                                     aaaaaaaaaTTTCC‑AACCCACTTATCTAATCAAT‑TTGGGCTTGCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTg                                                  <  2:660524/146‑1 (MQ=255)
                                                                                                      aTACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGa                                                 >  2:627323/1‑151 (MQ=255)
                                                                                                        aCAAATTTTTC‑AACACCCTTATCTACTAAAT‑TTTGGTTTACATCCGAAAAAACAA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGAtt                                               <  1:740331/151‑1 (MQ=255)
                                                                                                            atttttA‑AACACTTTTATCTCCTCAAA‑TTTGGCTTCCCCCCAAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt                                           <  1:1262325/149‑1 (MQ=255)
                                                                                                            aatatac‑AACACTCTTATCTACAAAAT‑TTTGGTTTCCCTCCGCAAAAACCC‑GG‑T‑T‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt                                           <  2:165515/145‑1 (MQ=255)
                                                                                                            aaTTTAC‑AACACCCTTATCTACTCAAT‑TTTGCTTTGCACCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt                                           <  2:462694/151‑1 (MQ=255)
                                                                                                             aTTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATa                                          >  2:378606/1‑151 (MQ=255)
                                                                                                              tttcC‑AACACCCTTATCTACTCAAT‑TTTGGCTTGCATCCG‑AAAAACCA‑GGTT‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAA‑TAGACAATTCCCATGTAGTGATTGCATAGt                                        <  1:1137716/151‑1 (MQ=255)
                                                                                                               tttC‑AACACCCTAATCTACTCAAT‑TTTGGTTTGCACCCAAAAAAACCG‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt                                        <  1:627614/151‑1 (MQ=255)
                                                                                                               tttC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt                                        >  2:757903/1‑151 (MQ=255)
                                                                                                                       ccacTTATCTACTAGAA‑TTTGGCTTGCACCCGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATGGTTGACTTa                                 <  2:580070/150‑1 (MQ=255)
                                                                                                                        cacTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa                                >  2:532064/1‑151 (MQ=255)
                                                                                                                        cacTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa                                >  1:1030003/1‑151 (MQ=255)
                                                                                                                        cacTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa                                >  2:460040/1‑151 (MQ=255)
                                                                                                                           ttttctatccGAA‑TTGGGTTTGAACCCACAAAACCCG‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                             <  2:909675/142‑1 (MQ=255)
                                                                                                                           ttATCTCCTCAAA‑TTTGGCTTGCACCCAAAAAAACCA‑GC‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                             <  1:90384/151‑1 (MQ=255)
                                                                                                                              tctcctgaaa‑TTTGCCTTCCCCCCGAAAAACCCA‑GT‑A‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTAc                          <  1:1023929/143‑1 (MQ=255)
                                                                                                                                    nnan‑TTTGGCTTCCACCCAAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAAc                    <  1:512334/149‑1 (MQ=255)
                                                                                                                                     caattttGGTTTCCATCCGAAAAACCCA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAAc                    <  1:92407/147‑1 (MQ=255)
                                                                                                                                      aa‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACat                  >  2:250134/1‑151 (MQ=255)
                                                                                                                                       attttGGCTTGCACCAAAAAAACCCG‑GG‑T‑A‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACat                  <  2:481362/149‑1 (MQ=255)
                                                                                                                                             gtttGCATCC‑CAAAAACCAGGG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc             <  1:233771/148‑1 (MQ=255)
                                                                                                                                             gcttccccccGAAAAACCCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc             <  1:584951/142‑1 (MQ=255)
                                                                                                                                             gCTTGAATCCGCAAAACCAA‑GT‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc             <  1:204938/150‑1 (MQ=255)
                                                                                                                                             gCTTCCACCCGAAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc             <  1:478569/150‑1 (MQ=255)
                                                                                                                                              cTTACACCCGCAAAAACCT‑GC‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTg           <  1:625446/151‑1 (MQ=255)
                                                                                                                                                      cGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTaa   >  1:358231/1‑151 (MQ=255)
                                                                                                                                                       gCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAAt  >  1:231780/1‑151 (MQ=255)
                                                                                                                                                        |                                                                                                                                                         
GTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTC‑AACACACTTATCTACTCGAA‑TTTGGCTTGCATCCGCAAAAACCA‑GG‑T‑C‑ACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAAT  >  NC_000913/3665553‑3665851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑