| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,686,028 | 0 | T | C | 54.9% | 75.6 / 127.2 | 93 | E1049G (GAG→GGG) | bcsC | cellulose synthase subunit |
| Reads supporting (aligned to +/- strand): ref base T (28/13); new base C (0/50); total (28/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.88e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.50e-14 | |||||||||||
CGCGCCGTGTAGCCGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCATGTTGTTCAGGCC > NC_000913/3685878‑3686170 | cgcgCCGTGTAGCCGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCt < 2:553494/151‑1 (MQ=255) gcgcCGTGTAGCCGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCt > 1:1434732/1‑150 (MQ=255) ccGTGTAGCCGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCa < 2:204629/151‑1 (MQ=255) cGTGTAGCCGAATCCCTGGCTGCTGCCCCCGTCCTTGGATTGCCGCGCAGCTTCTTCCTGACAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGTCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTcccg < 1:1555785/150‑2 (MQ=255) gtgtAGCCGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACg > 2:918896/1‑151 (MQ=255) gtgtAGCCGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACg > 2:555296/1‑151 (MQ=255) gtgtAGCCGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACg > 2:362482/1‑151 (MQ=255) gtgtAGCCGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACAACGAGCCAGACGCACCCAGCTCCCACg > 1:88699/1‑151 (MQ=255) tgtAGCCAAAGCCCTGGCTGCTGCCGCCAACGTTGGTTTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGGCCACGAGCCAGACGCACCCAGCTCCCACg < 2:913325/150‑1 (MQ=255) gCCGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAg > 1:172478/1‑151 (MQ=255) ccGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAg < 2:1355204/150‑1 (MQ=255) ccGAAGCCCTGACTGCTGCCCCCATCGTGGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCTACCACGAGCCAGACGCACCCAGCTCCCACGACCAg < 1:379758/150‑1 (MQ=255) aaGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑ttt < 2:796690/150‑1 (MQ=255) gCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑c > 1:77632/1‑150 (MQ=255) gCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑c > 1:1196476/1‑150 (MQ=255) cccTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑c < 1:406895/149‑1 (MQ=255) tgctgcCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTc < 1:280238/151‑1 (MQ=255) tCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCa > 2:1365774/1‑151 (MQ=255) ctttGGTTTGCCGCGCAGTTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGTTTTTGGTGCGTG‑AATGCGCCCCCGAGCCAGACGCCCCCAGCCCCCACGCCCAT‑TTTT‑CC‑GTG‑CGCCCCCGCCACATCAc < 1:955502/149‑1 (MQ=255) cGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCa > 2:1061377/1‑150 (MQ=255) tGGTTTGCCGCCCGCCTTTTCCCTGCCGGTCGGTCGGGATAAAATCCATCAGGGGAAAACGGGGCATGTTTTTGGTGCGTG‑AATGCGCCCACGAGCCAGACGCCCCCAGCCCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCgg < 2:1280475/151‑1 (MQ=255) tGGATGGCCGCGCAGCTTCTTCCTGCCAGTCGGTGGGGATCAGATTCATCAGCGGAAAACGCGGCATGTTTTTGGGGCGTG‑AATGCGCCCACGAGCCAGCCGCCCCCAGCCCCCCCGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCgg < 1:1380794/151‑1 (MQ=255) tttcccgcccggtttctccCTGCCAGTCGGTGGGGATAAGATTCATCAGCGGATAGCGCGGCATTGTTTTGGGGCGTA‑AATGCGACCACGAGCCAGACGCCCCCAGCCCCCCCGACCGG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTa < 2:88728/137‑1 (MQ=255) ttcgCCGCGCATTTTCTCCCGGCCGGTCGGCGGGGATCAGATTCATCAGCGAATAACGCGGCATGTTTTTGGTGCGTG‑ATTGCGCCCACGACCCAGCCCCCCCCAGCCCCCCCGCCCAG‑TTTT‑CG‑GTG‑CGCTCCCGCCACATCACCGGTAt < 1:969266/148‑1 (MQ=255) ttGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATg > 1:68026/1‑151 (MQ=255) tgcgccgcattttctccCCGCCAGTCGGTAGGGATCAGATTCATCAGCGGATACCGCGGCATGGTTTTGGGGCGGG‑AAGGCGCCCACGACCCAGCCGCCCCCTCCCCCCACGACCAT‑TTTT‑CC‑GGG‑CGCCCCCGCCACATCACCGGTATgg < 1:1674530/140‑1 (MQ=255) tGCCGCCCAGCTTTTCCCTGCGGGTCGGGCGGGATCAAATTCAACAGCGGAAAGCGCGCCGTGGTTTTGGGGCGGG‑AATGCGACCACGGGCCAGCCCCCCCCAGCTCCCGCGACCAT‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATgg < 1:40166/151‑1 (MQ=255) cgcattttctccCTCCCAGTCGGTCGGAATCAGATTCATCAGCGAATACCGCGGCATGGTTTTGGTGGGTG‑AATGCGCCCCCGACCCAGACCCCCCCAGCCCCCCCACCCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAAc < 1:1548749/145‑1 (MQ=255) gCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACa > 1:665905/1‑151 (MQ=255) gCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACa > 1:1285119/1‑151 (MQ=255) gCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACa > 1:1363349/1‑151 (MQ=255) gCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACa > 1:322222/1‑151 (MQ=255) tttcttcCTGCCGGTCGGTGGTGACGAGATCCGGGGGGGGATAGCGAGGCATGTTTTTGGTGGGTA‑AAGGCAACCACGAGCCAGACGCACCCGGCACCCACAACAAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGAc < 1:813147/148‑1 (MQ=255) ttcccTGCCGGTGGGTCGGGATCAAATTCACCGGGGGAAACCGCGGCAGGTTTTGGGGGCGTG‑AATGCGCCCACGCCCCGGCCGCCCCCGGCCCCCCCGACCTT‑TTTT‑CG‑GTC‑CCCTCCCGCCACATCACCGGTATGGCAAACGACAGGTa < 1:348902/148‑1 (MQ=255) tccccccgaGTGGGTGGGGATAAGATTCACCAGGGGAAAACGCGGCATTTTTTTGGGGCGAA‑AATGCGACCACAAGCCAGGCGCACCCAGCTCCCCCACCCAT‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTAt < 2:442512/143‑1 (MQ=255) cggccggtggggggggATAAGATCCACCGGGGAATACCGCGGCGGGGTTTGGGGGGGGG‑AAGGAGCCCACGGGCAAAACGCCCCCAGCCCCCCCG‑CCAGTTTTT‑CC‑GTG‑CCCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTcc < 2:1129137/138‑1 (MQ=255) cgcgcAGTGGGTCGGAATCAGATTCATCAGCGAATACCGCGGCTTGTTTTTGGGGCGTG‑AACGCGCCCACGAGCCAGCCGCACCCAGCCCCCACAACCTT‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTcc < 1:1568246/147‑1 (MQ=255) cTGCCAGTGGGTCGGGATCAGATTCACCAGCGAAAACCGCGGCAGGTTTTTGGGGCGTA‑AAGGCGCCCCCGAGCCAGACGCCCCCGGCCCCCACGCCCAT‑TTTT‑CC‑GTG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTcc < 2:1061395/151‑1 (MQ=255) ccggtgggtgggGAGCAGATTCATCAGCGGAAACCGCGGCTTGTTTTGGGGGCGTG‑AATGCGCCCACGAGCCGAACCCCCCCAGCCCCCACGCCCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTg < 1:1496024/144‑1 (MQ=255) tcgggggggATCAGATCCATCAGCGGATACCGCGGCATGTTTTGGGTGCGTG‑AATGCGCCCACGAGCCAGACGCACCCAGCCCCCACGACCAG‑TTTT‑CC‑GGG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGa < 1:402986/144‑1 (MQ=255) gggcggGACAAGATTCAGCGCCGGAAAACGCGGCATGTTTTGGGGGGGTG‑AATGCGCCCCCGAGCCAGACGCCCCCACCCCCCACGCCCAT‑TTTT‑CC‑GGG‑CGCGCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACt < 1:845578/147‑1 (MQ=255) gtcggGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGa > 1:11348/1‑147 (MQ=255) gggacaaGATACACCGGCGAATACCGCGGCGGGGTTTGGGTGCGTG‑AATGCGACCCCGAGCCAGACGCACCCGGCCCCCACAACCGG‑TTTT‑CC‑GGG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTgtag < 1:1356456/144‑1 (MQ=255) gggATAAGATTCATCAGGGGAAACCGGGGCTTGTTTTTGGTGGGGG‑AAGGCGCCCACGAGCCAGACGCCCCCAGCCCCCCCGACCAG‑TTTT‑CC‑GTG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTgtag < 2:114913/150‑1 (MQ=255) ggATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTgtagta > 1:731225/1‑151 (MQ=255) ggACCAAATTCCCCAGGGGAAAACGGGGCATGGTTTTGGGGCGGG‑AATGCGACCACGAGCCAGACCCACCCACCTCCCCCGACCAT‑TTTT‑CC‑GTG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTgtagt < 2:1706749/150‑1 (MQ=255) acaaaactcataaGCGGAAACGGCGTCATGTTTTGGGGGGTTG‑AGTCCGACCACGGCCAAGCCCCCCCCAGCCCCCACACCCAT‑TTTC‑CC‑GTC‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAc < 1:108052/144‑1 (MQ=255) aacAGATTCACCGCGGGAAAAGGCGGCATGG‑TTTGGGGGGTGAAATGCGACCGCGCCCCAGACGCCCCCAGCCCCCACGACCGG‑TTTC‑CG‑GGC‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAc < 1:450279/149‑1 (MQ=255) aacAGATACACCGGCGGAAAACGCGGCTTGGTTTTGGGGCGTG‑AAGGCGACCACGACCCAGCCCCCCCCCGCCCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAc < 2:836966/149‑1 (MQ=255) aTCAGATTCACCAGCGAAACACGCGGCGTGTTTTTGGGGCGTG‑ACTGCGCCCACGAGCCGGCCGCCCCCGCCCCCCACGACCAT‑TTTT‑CC‑TGG‑CCCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAc < 1:1305090/151‑1 (MQ=255) taaGATCCACCGGCGGAAACCGCGGCATGTTTTTGGTCCGGA‑AATGCCCCCACGACCCAGCCGCCCCCCGCCCCCACGACCAT‑TTTC‑CG‑GCT‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAcc < 1:1364377/149‑1 (MQ=255) tCAGTTTCATCGGCGGATACCGCGGCTTGGTTTTGGTGCGGA‑AATGCGCCCACGGCCCAGCCGCCCCCAGCCCCCCCGCCCAT‑TTTT‑CC‑GTG‑CCCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAcc < 2:280687/151‑1 (MQ=255) tCAGATTAACCAGCGAATAACGCGGCGTGTTTTTGGTGTGTG‑AAGGCGACCCCGAGCAAGACGCACCAGGCCCCCCCGCCCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAcc < 1:512608/151‑1 (MQ=255) tCAGATCCACCAGCGGATACCGCGCCATGTTTTTGGTGCGTG‑AATGCGACCACGAGCAAGACCCCCCCACCTCCCCCCCCCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAcc < 2:1628079/151‑1 (MQ=255) aaaGATTCACCAGCGAAAACCGGGGCTTGTTTTGGGTGGGTG‑AAGGCGCCCACGGCCCAGACGCCCCCAGCCCCCACGCCCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAcc < 1:1283476/149‑1 (MQ=255) tttcaccgggggAAAACGCGGCATGTTTTGGGTGGGTA‑AAGGCGCCCCCGAGCCAGACGCACCCGGCCCCCACACCCAT‑TTTT‑CC‑GGG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGccc < 2:1609024/141‑1 (MQ=255) tttCACCAGGGGAAAACGGGGCATGTTTTTGGTGCGTG‑AAGGCGACCCCGAGCCAGACCCCCCCAGCTCCCCCGACCAT‑TTTT‑CC‑GTG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAccc < 2:571026/147‑2 (MQ=255) ctgaGCGAAAAACGCGGCAGGTTTTTGGTGCGTA‑AATGCGCCCACGCCCCAGCCGCCCCCAGCCCCCCCGCCCGT‑TTTC‑CC‑GTC‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGAc < 1:834159/148‑1 (MQ=255) cccgggggAAAACGGGGCATGTTTTTGGTGGGTG‑AAGGCGCCCACGGGCAAGACGCCCCCAGCCCCCACGACCAT‑TTTC‑CC‑GGG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGAc < 2:1360295/145‑1 (MQ=255) tcagggaaaaccgcgGCGTGGTTTTGGGGGGGA‑AATGCGCCCACGACCGAGAGCCCCCCAGCCCCCACGCCCAT‑TTTT‑CC‑GTG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGAcc < 2:1467437/140‑1 (MQ=255) ccaGCGGAAACCGGGGCATGGTTTTGGTGCGTA‑AATGCGACCCCGAGCCAGACGCCCCCAGCCCCCACGACCAG‑TTTT‑CC‑GTG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGAcc < 2:187801/150‑1 (MQ=255) gCGAATACCGCGCCTTGTTTTTGGTGGGTG‑GAGGCGCCCACGAGCCAGACCCCCCAACCCCCCCCGCCCA‑‑TTTC‑CC‑GGG‑GGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCgag < 1:39521/150‑1 (MQ=255) cGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCgagt > 2:1628035/1‑151 (MQ=255) ggATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCgagtg > 1:1728244/1‑151 (MQ=255) gaaaccgcgCCTTGTTTTTGGTGCGTA‑AATGCGCCCCCGCCCCAGCCGCCCCCACCCCCCCCGCCCAT‑TTTT‑CC‑GTG‑CCCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCgagtg < 2:489204/145‑1 (MQ=255) gaaaaCGCGGCATGTTTTTGGTGGGGG‑AAGGCGCCCACGAGCCAGCCGCCCCCAGCCCCCACGACCAT‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCgagtg < 2:344814/147‑1 (MQ=255) gATAACGGGGCGTGGTTTGGGTGCGGA‑AATGCGACCACGGCCCAGACGCCCCCGGCCCCCCCGACCAG‑TTTT‑CC‑GGG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCgagtg < 1:1353330/150‑1 (MQ=255) gATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCgagtga > 2:1253151/1‑151 (MQ=255) aCGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAg > 2:864074/1‑151 (MQ=255) cgcgGTGTGTTTTTGGGGCGGA‑AAGGCCCCCCCGCGCCACACGCCCCCAGCCCCCCCGCCCTG‑TTTT‑CC‑GGG‑CCCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGc < 1:1015189/151‑1 (MQ=255) cgGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCa > 2:950698/1‑151 (MQ=255) gTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGAt > 2:413793/1‑151 (MQ=255) gTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGAt > 2:1594543/1‑151 (MQ=255) gTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGAt > 2:163423/1‑151 (MQ=255) gTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGAt > 2:1551350/1‑151 (MQ=255) ttttGGTGCGTG‑AATGCGCCCACGACCAAGCCGCCCCCGGCCCCCACGACCAG‑TTTC‑CC‑GGG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATc < 2:914662/151‑1 (MQ=255) tttgGGTGCGTG‑AATGGCCCCACGCGCCAGACCCACCCGGC‑CCCCCGGCCAT‑TTTTCCC‑GTG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGagc < 1:1175468/151‑3 (MQ=255) tttgGGGGCGTA‑AATGCCCCCACGGGCCCGCCCCCCCCAGCCCCCGGGACCTT‑TTTT‑CC‑GTC‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATc < 1:680621/151‑1 (MQ=255) ttgtGGTGCGTG‑AATGCCCCCACGAGCCAGACCCCCCCGGCCCCCCCGCCCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATc < 1:1067711/148‑1 (MQ=255) tttggggggggaaaTGCCCCCACGACCCAGCCCCCCCCAGCCCCCACGACCAG‑TTTT‑CC‑GGG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATc < 2:1455827/139‑1 (MQ=255) tttGGGGCGGG‑AAGGCGCCCACGAGCCAGACCCCCCCGGCCCCCACGACCA‑‑TTTT‑CC‑CTGCCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCt < 1:1358736/151‑1 (MQ=255) gTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGt > 2:1032678/1‑151 (MQ=255) gCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCg > 1:1246753/1‑151 (MQ=255) cgcccACGACCCAGACGCCCCCAGCCCCCACGACCAG‑TTTC‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAg < 1:470186/148‑1 (MQ=255) cccccggcccAGACCCCCCCACCCCCCACGACCAT‑TTTC‑CC‑GTG‑CCCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGAt < 2:1153290/143‑1 (MQ=255) cGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCAtg > 1:730588/1‑151 (MQ=255) agccagccCCCCCCACCCCCCCCGCCCAT‑TTTC‑CC‑GTG‑CCCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCAtgt < 2:89030/150‑1 (MQ=255) acccagccccccccAGCCCCCCCGCCCGT‑TTTC‑CC‑GTG‑CCCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCAtgt < 2:1325791/139‑1 (MQ=255) acccagccccccccAGCCCCCCCGACCGT‑TTTC‑CC‑GTG‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCAtgt < 2:1244794/139‑1 (MQ=255) cccagccccccccGGCCCCCACGCCCAT‑TTTC‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCAtgttg < 2:746217/141‑1 (MQ=255) cgccccccccAGCCCCCCCGACCAG‑TTTC‑CC‑GTG‑CCCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCATGTTGTTc < 2:1482162/144‑1 (MQ=255) cgACCCACCCCGCCCCCAGAACCAT‑TTTC‑CC‑GCG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCATGTTGTTc < 1:362366/150‑1 (MQ=255) gccGCCCCCGGCCCCCCCGACCGT‑TTTT‑CG‑GTC‑CGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCATGTTGTTc < 2:1707002/148‑1 (MQ=255) ccccccccACCCCCCCCGCCCAT‑TTTC‑CC‑GGG‑CCCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCATGTTGTTc < 2:228785/144‑1 (MQ=255) cccccAGCCCCCACG‑CCCG‑TTTT‑CCGGTG‑CACACCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCATGTTGTTCAGGcc < 1:187463/149‑1 (MQ=255) | CGCGCCGTGTAGCCGAAGCCCTGACTGCTGCCGCCATCGTTGGATTGCCGCGCAGCTTCTTCCTGCCAGTCGGTCGGGATCAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTG‑AATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAG‑TTTT‑CC‑GTG‑CGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGATCTTTGTCGTAATGCCAGATCATGTTGTTCAGGCC > NC_000913/3685878‑3686170 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |