| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380012 | 18 (0.360) | 24 (0.450) +GGG |
17/200 | 1.4 | 56.6% | intergenic (‑131/+57) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| ? | NC_000913 | 380013 = | 18 (0.330) | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein | |||||
TATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTAC > NC_000913/379907‑380135 | tataCTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGccc > 1:62343/1‑139 (MQ=255) taggggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGTGGGGTT‑AATCGGAAGGAAAGGCCGCCCCGgac > 2:1036057‑M2/102‑138 (MQ=255) taGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATa > 1:967210/1‑139 (MQ=255) gggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaagggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAg > 1:645315‑M2/100‑139 (MQ=255) gggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGAGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAgcgg > 1:809618/1‑139 (MQ=255) gggtattctctatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCA‑AACCGGCAGGAAAGCCCGCCCGGGA‑Agcggg > 2:933445‑M2/97‑139 (MQ=255) gggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCGCGGATAgcgg > 1:607862‑M2/97‑139 (MQ=255) gggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAgcgg > 1:178462‑M2/97‑139 (MQ=255) gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAgcggg > 1:437705/1‑139 (MQ=255) gtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAgcgggc > 1:266048‑M2/95‑139 (MQ=255) tATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg > 1:400248/1‑139 (MQ=255) atttgtcaaggcatacccccctatagtatataacactggagaaaaaaatttatccggtgaatgtgggcggaaaaaaaaaaggaaagggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGa < 1:732183‑M2/51‑1 (MQ=255) gtaaatgcatacccccctatagtatataacactggagaataaaatttatccgctgaatgtggtcggaaaacaaagaggaaacggGGGGGGGGGGCT‑AATGGGCGGGGAAGGCCGCCCCGGAAAGGGGGCGGCAGAAGGa > 2:700416‑M2/85‑139 (MQ=255) gTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAAt > 2:920519/1‑139 (MQ=255) aaTGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGTGGCAGAAGGAATCAg > 1:192108/1‑139 (MQ=255) tGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAAt > 1:882985/1‑139 (MQ=255) ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAg < 2:62343/139‑1 (MQ=255) cctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGt > 1:226949‑M2/69‑139 (MQ=255) tatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCGGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCa > 2:453755‑M2/67‑139 (MQ=255) tataGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAg > 1:401510/1‑138 (MQ=255) tataGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAg < 2:401510/138‑1 (MQ=255) gacagataaaaaactggagaataaaatttatccggggaattggggcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAg < 2:767075‑M2/74‑1 (MQ=255) taggttaaaaaactggggaaaaaaatttatccggggaatggggtgggaaaaccaagggggagggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa < 2:226949‑M2/75‑1 (MQ=255) aaataacacgggaaaataaaatttatccggggaatggggtgggaaaaaaaagagggaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACggg < 2:48757‑M2/79‑1 (MQ=255) tataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGc > 1:554752‑M2/60‑139 (MQ=255) ataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc < 2:809618/139‑1 (MQ=255) acactggagaataaaatttatccggggaatgtgggcggaaaacaaagaggaaagggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc < 1:700416‑M2/83‑1 (MQ=255) cactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaagggGGGGGGGGGGCA‑AATCGGAAGGAAAGGCGCCCCCGGATAGCGGGCGGCAGAAGAAATAAGAATTTCAAGTCCGGACGGGctgaa > 2:387684‑M2/56‑137 (MQ=255) cactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCaa > 1:526447‑M2/55‑139 (MQ=255) tggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaagggGGGGGGGGGGCT‑AATGGGCGGGGAAGGCCGCCCCGGATAGGGGGCGGAGGAAGGAATCAGAATTTCCAGGTCAGACGGGCCGCAAGt > 1:363769‑M2/53‑139 (MQ=255) tggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCCCCCCGGATAGCGGGGGGAAGAGGGAATAAGAATTCCCGGGGCAGCCGGGCGGCAAGtt > 2:921014‑M2/52‑139 (MQ=255) tGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGGTAAATGGGAAGGGAAGCCCCCCCGGGATAGGGGGGGCAAGAGGGAAACAAAATTCCCGGGTCAGGGGGGCTGCAAttt > 1:79285/1‑139 (MQ=255) tGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTg > 2:204895/1‑139 (MQ=255) ggAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCa < 2:882985/139‑1 (MQ=255) gagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCCCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGgctgcaactgtc > 1:767075‑M2/50‑134 (MQ=255) tAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGGGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCg > 1:636051/1‑139 (MQ=255) aTCCGGTGAATGTGGTGGGAAAACAAAGAGGAAAGGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAatc < 1:920519/139‑1 (MQ=255) aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAatc > 2:1202381/1‑139 (MQ=255) gaatgtggtcggaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGAAAGCGGGCGGCAGAAGGAATAAGAATTTCCAGGGCAGACGGGCTGAAAGTTGAAGACCGTTAAAAACATCGGt > 2:961529‑M2/30‑139 (MQ=255) gaaaacaaagaggaaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGt > 1:449571‑M2/19‑139 (MQ=255) aacaaagagggaagggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTAc < 1:387684‑M2/123‑1 (MQ=255) aaaaaaagagggaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTAc < 1:11586‑M2/123‑1 (MQ=255) ggaaagGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTgggg > 1:131633‑M2/7‑121 (MQ=255) ggaaagGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTgggg < 2:131633‑M2/115‑1 (MQ=255) aaaggGGGGGGGGGGCT‑AATCGGCCGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGa > 1:869988‑M2/6‑98 (MQ=255) aaaggGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGa < 2:869988‑M2/93‑1 (MQ=255) aagGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCa > 1:996854‑M2/4‑62 (MQ=255) aagGGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCa < 2:996854‑M2/59‑1 (MQ=255) | TATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGGCT‑AATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTAC > NC_000913/379907‑380135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |