Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	380,012	1	.	G	68.8%	195.1 / 89.2	80	intergenic (‑131/+57)	frmR/yaiO	regulator protein that represses frmRAB operon/outer membrane protein
Reads supporting (aligned to +/- strand):  ref base . (17/8);  new base G (42/13);  total (59/21)
Fisher's exact test for biased strand distribution p-value = 4.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TTTCGCACCTCATCATCTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCC  >  NC_000913/379881‑380150                                                                                                                                         |                                                                                                                                                   tttCGCACCTCATCATCTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑g‑gg‑gg‑gg                                                                                                                                        >  2:338733/1‑139 (MQ=255)            atcatcTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATATCCCCCTATAGTATATAACACTAGATAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GGAGG‑GGG‑GGCTAATC‑g                                                                                                                            >  2:681319/1‑139 (MQ=255)                           tataCTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGgccgcc                                                                                                            >  2:87941/1‑139 (MQ=255)                                tataGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGa                                                                                                       >  2:235875/1‑139 (MQ=255)                                  taGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGGTAATC‑GGCCGGGGAAGGCCCCCCGGGaa                                                                                                      >  1:773118/1‑138 (MQ=255)                                  taGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATa                                                                                                     >  2:362460/1‑139 (MQ=255)                                  taGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCAGCCCCGGATa                                                                                                     >  2:525994/1‑139 (MQ=255)                                   aGGGGGGTATTCTATATGTCAATGCATACTCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GCCAAATC‑GG‑CACGGAAGGCCGCCCTGGAGAgc                                                                                                   >  2:1029512/1‑139 (MQ=255)                                   aGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAAGC‑GG‑CAGGGAAGGCCGCCCCGGAAAg                                                                                                    >  1:144331/1‑139 (MQ=255)                                   aGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCAAATC‑GG‑CAGGGAAGGCCGCCCCGGATAg                                                                                                    >  2:622451/1‑139 (MQ=255)                                   aGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGGTAAACGGG‑CAGGGAAGGCCCCCCGGGaaac                                                                                                    >  2:538461/1‑136 (MQ=255)                                   aGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAgc                                                                                                   >  2:232130/1‑139 (MQ=255)                                     gggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATGCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGACA‑G‑‑‑G‑GG‑GG‑GGG‑GGACAATC‑GG‑CAGGGAAGGCCGCCCCGGATAgcg                                                                                                  >  1:866747/1‑139 (MQ=255)                                     gggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAgcg                                                                                                  >  2:1094449/1‑139 (MQ=255)                                     gggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAgcgg                                                                                                 >  1:297551/1‑139 (MQ=255)                                       gggTATTTTATATGTTAATGCATACCCCCCTATAAGATATAAACCTGGAAAAAAAAATTTATCCGGGGAATTGGGGCGGGAAAACAAG‑GGGAA‑A‑G‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAgcggg                                                                                                <  1:538461/139‑1 (MQ=255)                                       gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAgg                                                                                                                 >  2:803127/1‑122 (MQ=255)                                       gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAgcgggc                                                                                               >  1:851941/1‑139 (MQ=255)                                       gggTATTCTATATGTCAATGCATACCCCCCTAAAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAgg                                                                                                                 <  1:803127/122‑1 (MQ=255)                                        ggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAgcgggcg                                                                                              >  2:315991/1‑139 (MQ=255)                                                    gtaaaTGCATACCCCCCTATAGTATATAAAACTGGAGAAAAAATTTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AGG‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGaa                                                                                    <  2:292791/136‑1 (MQ=255)                                                    gTCAATGCATACCCCCCTATAGTATATAACACTGGAGAGTAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAAGC‑GG‑CAGGGAAGGCCCCCCCGGATTGCGGGAGGCAGAAGGAATc                                                                                  >  2:169637/1‑139 (MQ=255)                                                    gTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAAt                                                                                   >  1:104304/1‑139 (MQ=255)                                                      cAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAg                                                                                >  1:599472/1‑139 (MQ=255)                                                       aaTGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAgg                                                                                                                 <  2:1065927/106‑1 (MQ=255)                                                       aaTGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAgg                                                                                                                 >  1:1065927/1‑106 (MQ=255)                                                         tGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGaa                                                                              >  2:139250/1‑139 (MQ=255)                                                         tGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAAAAGGAATGAGaa                                                                              >  1:869375/1‑139 (MQ=255)                                                         tGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAAGC‑GG‑CAGGGAAGGCCGCCCTGGATAGCGGGAGGCGGAAGGAATCAGaa                                                                              >  1:545083/1‑139 (MQ=255)                                                         tGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAAt                                                                             >  1:546750/1‑139 (MQ=255)                                                             aagagcaaaataGTATATAACACTGGAGAGTAAAATTTATCCGGTGAA‑AGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTc                                                                          <  2:831547/130‑1 (MQ=255)                                                               ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCa                                                                        >  1:510723/1‑139 (MQ=255)                                                               ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑g‑gg‑gg‑ggg                                                                                                                                       >  1:944985/1‑78 (MQ=255)                                                               ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑g‑gg‑gg‑ggg                                                                                                                                       <  2:944985/78‑1 (MQ=255)                                                                   ccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTc                                                                    >  2:624316/1‑139 (MQ=255)                                                                    cTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCa                                                                   >  1:67490/1‑139 (MQ=255)                                                                     tataGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGccc                                                                                                           >  1:344297/1‑98 (MQ=255)                                                                     tataGTATATAACACGGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGccc                                                                                                           <  2:344297/98‑1 (MQ=255)                                                                      taagaaaaaaaCACGGGGGAATAAAATTTTACAGGAGAA‑AGTGGCCGGAATATAAA‑GGGAA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa                                                                 <  1:346542/130‑1 (MQ=255)                                                                      ataGTATATAACTTTGTGGAAAAAAATTTGTCCGGCGAA‑TGAGGTCAGAAAAATAA‑GGGGA‑G‑A‑‑‑G‑GG‑GGTGGG‑GGTTATTC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa                                                                 <  1:515172/139‑1 (MQ=255)                                                                       taGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AGG‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa                                                                 >  1:1092593/1‑139 (MQ=255)                                                                          tatataACACTGGAGAATAAAATTTATCCGGGGAA‑TGGGGGCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACggg                                                             <  1:917789/139‑1 (MQ=255)                                                                            tataACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATG‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCt                                                           >  2:226341/1‑139 (MQ=255)                                                                            tataACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGGAGAAGGAATCAGAATTTCAAGGTGAGACGGGCt                                                           >  1:884235/1‑139 (MQ=255)                                                                            tataACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCt                                                           >  2:39815/1‑139 (MQ=255)                                                                            tataACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGGTGGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCt                                                           >  2:851728/1‑139 (MQ=255)                                                                               aaCACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCTGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCa                                                        >  1:1076783/1‑139 (MQ=255)                                                                               aaCACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCa                                                        >  2:921445/1‑139 (MQ=255)                                                                               aaCACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAACC‑GG‑CAGGGAAGGCCTCCCGGGATAGCGGGCGGCAGAAGGAATCAGAATTTACAGGTCAGACGGGATGCa                                                        >  2:515172/1‑139 (MQ=255)                                                                               aaCACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCGAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGGAGAAGGAAACAGAATTTCCAGGGCAGACGGGCTGaaa                                                       >  1:295122/1‑139 (MQ=255)                                                                                 cacTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAg                                                      >  2:548877/1‑139 (MQ=255)                                                                                 cacTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAg                                                      >  1:395325/1‑139 (MQ=255)                                                                                 cacTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GGAGG‑GGG‑GGTTAATC‑GG‑CTGGGAAGGCCGCCCGGGAGAGGGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGaacctggctctt                                                      >  1:831547/1‑128 (MQ=255)                                                                                    tGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTg                                                   >  1:88691/1‑139 (MQ=255)                                                                                    tGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTg                                                   >  1:330936/1‑139 (MQ=255)                                                                                    tGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTg                                                   >  2:917789/1‑139 (MQ=255)                                                                                    tGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTg                                                   >  2:348606/1‑139 (MQ=255)                                                                                    tGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTg                                                   >  1:1086399/1‑139 (MQ=255)                                                                                    tGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑g‑gg‑gg‑ggg‑gggcta                                                                                                                                >  2:513499/1‑59 (MQ=255)                                                                                    tGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑g‑gg‑gg‑ggg‑gggcta                                                                                                                                <  1:513499/63‑5 (MQ=255)                                                                                    tGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGc                                                  >  1:109092/1‑139 (MQ=255)                                                                                      gagaATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AGGGG‑GG‑GG‑GGG‑GGTTAATC‑GG‑CAGGGAAGGCCCCCCCGGATGGGGGGCGGCAGAAGGAATCAAAATTTCAAGTTCAGACGGGCTGCAGGTTg                                                   >  1:110284/1‑139 (MQ=255)                                                                                      gagaATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCCGACGGGCTGCAAGTTGCa                                                 >  1:386462/1‑139 (MQ=255)                                                                                      gagaATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCa                                                 >  2:176482/1‑139 (MQ=255)                                                                                      gagaATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCa                                                 >  2:1099286/1‑139 (MQ=255)                                                                                      gagaATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCa                                                 <  1:176482/139‑1 (MQ=255)                                                                                      gagaATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCa                                                 >  2:725/1‑139 (MQ=255)                                                                                      gagaATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAg                                                <  1:232130/139‑1 (MQ=255)                                                                                      gagaATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGCA‑A‑A‑‑‑GTGG‑GG‑GGG‑GGCTAATC‑GG‑CAGGCAAGGCCGCCCCGAGTAGCGGGCGGCAGAAGGAATCATGATTTCCAGGACAAACGGGCTCCAAGTTgga                                                 >  1:265956/1‑137 (MQ=255)                                                                                         aaTAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGAc                                              >  2:1094600/1‑139 (MQ=255)                                                                                           tAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCg                                            >  1:145207/1‑139 (MQ=255)                                                                                             aaaTTTATCCGGTGAA‑TGTGGTCGGAAAAACAA‑GAGGA‑AGG‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGtt                                          <  1:921445/139‑1 (MQ=255)                                                                                                tttATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTaaa                                       >  2:344317/1‑139 (MQ=255)                                                                                                       ggTGAA‑TGTGGTCGGAAAACAAA‑GGGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTc                                                                          <  1:277472/97‑1 (MQ=255)                                                                                                       ggTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTc                                                                          >  2:277472/1‑97 (MQ=255)                                                                                                           aa‑TGTGGGGGGAAAAGAAG‑GGGGAGA‑G‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTg                            <  1:87941/139‑1 (MQ=255)                                                                                                              tgtgGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTgggg                         <  2:851941/139‑1 (MQ=255)                                                                                                              tgaggTGGGAAAAAAAA‑GAAGA‑A‑AT‑‑G‑GG‑GG‑GGT‑GGCTAAAC‑AG‑AAGTGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGATCGTTAAAATCATCGGTTggg                          <  1:990025/136‑1 (MQ=255)                                                                                                               gtgGTCGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTgggg                         <  1:1070080/139‑1 (MQ=255)                                                                                                                 ggTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGgtgt                      >  2:895675/1‑139 (MQ=255)                                                                                                                  ggcGGAAAACAAAGGGGGA‑A‑G‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGgtgt                      <  1:338733/137‑1 (MQ=255)                                                                                                                  gTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTc                     <  2:599472/139‑1 (MQ=255)                                                                                                                    cGGAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCCCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCg                    >  2:389988/1‑139 (MQ=255)                                                                                                                     ggAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTa                  <  1:895675/139‑1 (MQ=255)                                                                                                                      gAAAACAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTa                  <  1:1094449/139‑1 (MQ=255)                                                                                                                       aaaaCAAA‑GAGGA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTAc                 <  1:348606/139‑1 (MQ=255)                                                                                                                        aaaCAAA‑GAGGA‑A‑AGG‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTAc                 <  2:1092593/139‑1 (MQ=255)                                                                                                                                  ggA‑A‑AG‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATAAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTAc       >  2:362514/1‑139 (MQ=255)                                                                                                                                        a‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGcc  >  2:1100407/1‑139 (MQ=255)                                                                                                                                         |                                                                                                                                                   TTTCGCACCTCATCATCTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAA‑TGTGGTCGGAAAACAAA‑GAGGA‑A‑A‑‑‑G‑GG‑GG‑GGG‑GGCTAATC‑GG‑CAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCC  >  NC_000913/379881‑380150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑