| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,304,813 | (C)7→8 | coding (1005/1245 nt) | mtr ← | tryptophan transporter of high affinity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,304,806 | 1 | . | C | 92.3% | 38.8 / ‑2.2 | 13 | coding (1012/1245 nt) | mtr | tryptophan transporter of high affinity |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (8/4); total (9/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.30e-01 | |||||||||||
GGCTGCCAAAGCGTTTACGCGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGCCCACAGCCGAGTCGTCGAAACCAAA‑CAGATCTGCCAGATAGTCAAACAAACCCAGCGTTACGCCGAGGAACG > NC_000913/3304689‑3304928 | ggCTGCCAAAGCGTTTACGCGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCAGAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCCCCCCACAACTGGCgggg < 1:571095/139‑1 (MQ=255) gCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTc > 1:421372/1‑139 (MQ=255) aaCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGcc > 2:200132/1‑139 (MQ=255) ccGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGCCCACAACCg > 1:7138/1‑139 (MQ=255) ccGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGCCCACAACCg > 2:449307/1‑139 (MQ=255) aTGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGCCCACAACCGAGTCGTCGAAACCAAA‑CAg < 1:328627/138‑1 (MQ=255) aTGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGCCCACAACCGAGTCGTCGAAACCAAA‑CAg > 2:328627/1‑138 (MQ=255) gCTAAACCCGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACACCAGC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGCCCACAACCGAGTCGTCGAAACCAAA‑CAGATCTGCCAGa < 2:374926/139‑1 (MQ=255) gCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGCCCACAACCGAGTCGTCGAAACCAAA‑CAGATCTGCCAGa < 2:7138/139‑1 (MQ=255) ggCGTACAGGAATCCGTTCGGGAACAACAGC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGCCCACAACCGAGTCGTCGAAACCAAA‑CAGATCTGCCAGATAGTCAAACAAACCCAGCGt > 1:16616/1‑139 (MQ=255) aGGAATCCGTTCGGGAACAACAG‑‑CCCCCCCCCCACTGGCCGGGCAAAGGGCAGCCATGCCGGTTTCAAGCCGCCCCAAACCCGAG‑CGGCGAAACCAAACCAGACTTCCAAGTTAG‑CAAACAAAccccaccgttagccga > 2:637648/1‑126 (MQ=255) tCCGTTCGGGAACAACAGC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCTATGCCGTTTTCAAG‑CGGCCCACAACCGAGTCGTCGAAACCAAA‑CAGATCTGCCAGATAGTCAAACAAACCCAGCGTTACGCCGAGgaa > 2:123370/1‑139 (MQ=255) cGTTCGGGAACAACAGC‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGCCCACAACCGAGTCGTCGAAACCAAA‑CAGATCTGCCAGATAGTCAAACAAACCCAGCGTTACGCCGAGgaacg > 1:447075/1‑139 (MQ=255) | GGCTGCCAAAGCGTTTACGCGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑‑CCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAG‑CGGCCCACAGCCGAGTCGTCGAAACCAAA‑CAGATCTGCCAGATAGTCAAACAAACCCAGCGTTACGCCGAGGAACG > NC_000913/3304689‑3304928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |