| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,190,061 | (G)6→7 | coding (387/672 nt) | phoP ← | response regulator in two‑component regulatory system with PhoQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,190,055 | 1 | . | G | 97.9% | 361.6 / ‑0.7 | 96 | coding (393/672 nt) | phoP | response regulator in two‑component regulatory system with PhoQ |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (51/43); total (52/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 101 total aligned reads displayed.
TTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑GGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAA > NC_000913/1189917‑1190177 | ttGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAc > 2:1089413/1‑139 (MQ=255) tGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑g < 1:1371016/139‑1 (MQ=255) ttGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGAcc < 2:1291283/139‑1 (MQ=255) cTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGTCa < 2:349084/139‑1 (MQ=255) tttGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAg > 1:514837/1‑139 (MQ=255) tGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAAt < 2:542776/122‑1 (MQ=255) tGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAAt > 1:542776/1‑122 (MQ=255) ttattGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTa > 1:1371529/1‑139 (MQ=255) ttattGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTa > 2:400976/1‑139 (MQ=255) tATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcgccg > 1:168477/1‑139 (MQ=255) tATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcgccg > 2:429730/1‑139 (MQ=255) tATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcg < 2:598583/136‑1 (MQ=255) tATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcg > 1:598583/1‑136 (MQ=255) tCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGcc > 2:283480/1‑139 (MQ=255) ccATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCt > 2:650525/1‑139 (MQ=255) ataGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCAtt > 2:848878/1‑139 (MQ=255) ataGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCAtt > 2:299964/1‑139 (MQ=255) ataGTGTATTCGAACGCGGTCAGATTGATCACTTCGTCATTAATAGATAATTCACAGCGAGAGAGAGCAACCTGAAAA‑GGGGGAGAGCGAAATAACCAGTGAAACGAAAAAGGTATTAGGCCACATTAATGATTGCaat > 2:26524/1‑137 (MQ=255) gtgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgc > 1:671641/1‑139 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGACACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg > 2:1480658/1‑139 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGaa < 1:338426/87‑1 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGaa > 2:338426/1‑87 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg > 1:472069/1‑139 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg > 2:1230719/1‑139 (MQ=255) gtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCgcgc > 2:1223202/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGa < 1:612199/89‑1 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGa < 2:1258442/89‑1 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGa > 2:612199/1‑89 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGa > 1:1258442/1‑89 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCa < 2:423015/101‑1 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCa > 1:423015/1‑101 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc > 1:258989/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc > 1:1238882/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc > 2:1334444/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc < 2:168477/139‑1 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc > 1:1412585/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc < 1:1416885/139‑1 (MQ=255) aTTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAg < 1:359917/101‑1 (MQ=255) aTTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAg > 2:359917/1‑101 (MQ=255) ttCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt < 1:429730/139‑1 (MQ=255) ttCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt > 2:1146859/1‑139 (MQ=255) tCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCa < 1:946681/98‑1 (MQ=255) tCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCa > 2:946681/1‑98 (MQ=255) gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 2:472069/139‑1 (MQ=255) gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 2:597900/139‑1 (MQ=255) cgcgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑ggggg‑gg > 2:962517/1‑70 (MQ=255) cgcgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑ggggg‑gg < 1:962517/71‑2 (MQ=255) gTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc > 1:855237/1‑132 (MQ=255) gTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 2:855237/132‑1 (MQ=255) tttGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATg > 1:803934/1‑139 (MQ=255) ttGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGa < 1:26524/139‑1 (MQ=255) ttGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGa < 1:299964/139‑1 (MQ=255) tGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGaa < 1:1146859/139‑1 (MQ=255) cACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACgg > 2:542449/1‑139 (MQ=255) cACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACgg > 2:807923/1‑139 (MQ=255) cTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt < 2:514837/139‑1 (MQ=255) cTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt < 1:1223202/139‑1 (MQ=255) ttCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGttt > 1:244572/1‑139 (MQ=255) tCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTa < 1:848878/139‑1 (MQ=255) tCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTa < 2:1238882/139‑1 (MQ=255) tCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTa > 1:770253/1‑139 (MQ=255) tCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑GGGGG‑GAGCGAAATGACCTGTGAAGCCAGAc > 1:378890/1‑76 (MQ=255) tCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑GGGGG‑GAGCGAAATGACCTGTGAAGCCAGAc < 2:378890/76‑1 (MQ=255) aTTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTcac > 1:522822/1‑139 (MQ=255) ttAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTcaca < 1:1345346/139‑1 (MQ=255) ttAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTcaca < 1:542449/139‑1 (MQ=255) ttAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTcaca < 2:244572/139‑1 (MQ=255) aTAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATg < 1:1125851/52‑1 (MQ=255) aTAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATg > 2:1125851/1‑52 (MQ=255) aTAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt < 2:2369/105‑1 (MQ=255) aTAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt > 1:2369/1‑105 (MQ=255) aTAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATaa > 1:949852/1‑139 (MQ=255) aGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatc < 2:949852/139‑1 (MQ=255) aTTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTa < 1:132766/66‑1 (MQ=255) aTTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTa > 2:132766/1‑66 (MQ=255) aTTCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAg < 2:803934/139‑1 (MQ=255) ttCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGa > 2:1040576/1‑59 (MQ=255) ttCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGa < 1:1040576/59‑1 (MQ=255) ttCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGc > 1:409271/1‑139 (MQ=255) ttCACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGc > 1:1152401/1‑139 (MQ=255) cACGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCAc < 1:1089413/139‑1 (MQ=255) cGGCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCg < 1:748551/139‑1 (MQ=255) ggCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 2:1399985/95‑1 (MQ=255) ggCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc > 1:1399985/1‑95 (MQ=255) ggCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCtt > 1:655709/1‑100 (MQ=255) ggCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCtt < 2:655709/100‑1 (MQ=255) ggCGAGAGAGATCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCgg > 1:57848/1‑139 (MQ=255) gagagaTCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCa < 1:990518/47‑1 (MQ=255) gagagaTCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATc > 1:314198/1‑88 (MQ=255) gagagaTCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATc < 2:314198/88‑1 (MQ=255) gagagaTCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACtt > 1:583774/1‑139 (MQ=255) gagaTCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTaa < 2:258989/139‑1 (MQ=255) aTCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGAc > 1:355176/1‑45 (MQ=255) aTCAACCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGAc < 2:355176/45‑1 (MQ=255) aCCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCa > 1:488459/1‑38 (MQ=255) aCCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCa < 2:488459/38‑1 (MQ=255) aCCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCAc > 2:1504652/1‑122 (MQ=255) aCCTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCAc < 1:1504652/122‑1 (MQ=255) ccTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 2:330220/80‑1 (MQ=255) ccTGAAACGGGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc > 1:330220/1‑80 (MQ=255) | TTGGAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑GGGGG‑GAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAA > NC_000913/1189917‑1190177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |