| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,185,875 | (G)7→6 | intergenic (‑79/‑42) | rcnR ← / → rcnA | transcriptional repressor of rcnA/membrane protein conferring nickel and cobalt resistance |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,185,869 | 0 | G | . | 100.0% | 238.1 / NA | 56 | intergenic (‑73/‑48) | rcnR/rcnA | transcriptional repressor of rcnA/membrane protein conferring nickel and cobalt resistance |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (32/24); total (32/24) | |||||||||||
ACCTGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCT > NC_000913/2185732‑2186002 | aCCTGGCCCTTAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTgg < 2:807897/139‑1 (MQ=255) cccTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTggggggag > 1:167876/1‑137 (MQ=255) aaTCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGaa > 1:166761/1‑139 (MQ=255) gCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTggg < 2:453350/119‑1 (MQ=255) gCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTggg > 1:453350/1‑119 (MQ=255) gCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGcc > 2:910717/1‑139 (MQ=255) aCGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGa > 2:182994/1‑139 (MQ=255) aCGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGa > 2:1048485/1‑139 (MQ=255) cgcgCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGaa > 2:520088/1‑139 (MQ=255) gcgcTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAAt < 2:268368/139‑1 (MQ=255) cAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACt < 2:97313/139‑1 (MQ=255) cGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATg < 1:182994/139‑1 (MQ=255) aTTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGc > 1:111165/1‑108 (MQ=255) aTTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGc < 2:111165/108‑1 (MQ=255) aTTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAcc < 1:1048485/139‑1 (MQ=255) tATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAt > 2:496133/1‑139 (MQ=255) tGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAttt > 2:1068084/1‑139 (MQ=255) aCATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACaa < 2:326910/139‑1 (MQ=255) aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTggg < 1:1003697/77‑1 (MQ=255) aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTggg > 2:1003697/1‑77 (MQ=255) aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTa > 2:658248/1‑109 (MQ=255) aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTa < 1:658248/109‑1 (MQ=255) ggCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGa > 1:554184/1‑127 (MQ=255) ggCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGa < 2:554184/127‑1 (MQ=255) ggCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActct > 1:552152/1‑139 (MQ=255) ggTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGaa < 1:99303/101‑1 (MQ=255) ggTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGaa > 2:99303/1‑101 (MQ=255) cAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCGGAATTAATATTAAGAATTATTTTCATGACCGAATTTACAACACTTATTCAGCAAGGaaaa > 2:832902/1‑138 (MQ=255) cAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAAc > 2:537939/1‑139 (MQ=255) cAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACg > 2:41274/1‑139 (MQ=255) aGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGc < 1:496133/139‑1 (MQ=255) atatGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGc < 1:312925/73‑1 (MQ=255) atatGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGc > 2:312925/1‑73 (MQ=255) atatGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTg > 2:7458/1‑139 (MQ=255) acgaTTAATCTACTGGGGTGTAGTATCAGGTACT‑GGGGCGAGTAAAATCAGATTGCCGAATTACTACTAAGAATTATTATCATGTCCGAAATTACAACTCTTCTTCAGCAAGGAAACGGCTGGTTCTTCATCCCCAggg < 1:832902/136‑3 (MQ=255) aCTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAgcg < 2:552152/139‑1 (MQ=255) ttAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCAt > 2:784996/1‑139 (MQ=255) ttAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCAt > 1:475537/1‑139 (MQ=255) cTACTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTAc < 1:910717/139‑1 (MQ=255) cTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTaa < 2:661899/58‑1 (MQ=255) cTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTaa > 1:661899/1‑58 (MQ=255) cTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATccc < 1:947659/122‑1 (MQ=255) cTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATccc > 2:947659/1‑122 (MQ=255) cTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTg > 2:562873/1‑139 (MQ=255) cTGGGGGGTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTg > 2:392871/1‑139 (MQ=255) ggggggTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACt > 2:998725/1‑54 (MQ=255) ggggggTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACt < 1:998725/54‑1 (MQ=255) ggggggTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTa > 2:612575/1‑55 (MQ=255) ggggggTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTa < 1:612575/55‑1 (MQ=255) ggggggTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATccc > 2:540544/1‑120 (MQ=255) ggggggTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATccc < 1:540544/120‑1 (MQ=255) ggggggTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTGCTTCATCCCCAGCGCCATCTTACTTGGt > 2:665916/1‑139 (MQ=255) gggggTAGTATCAGGTACT‑GGGGGGAGTAGAAGCAGATTGCCGAATTAATACTAAGAATTATTATCAGGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTg > 1:349258/1‑139 (MQ=255) ggTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACt < 2:315105/50‑1 (MQ=255) ggTAGTATCAGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACt > 1:315105/1‑50 (MQ=255) aGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGc > 2:147557/1‑92 (MQ=255) aGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGc < 1:147557/92‑1 (MQ=255) aGGTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGcc > 2:1042389/1‑139 (MQ=255) ggTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCa > 2:53627/1‑133 (MQ=255) ggTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCa < 1:53627/133‑1 (MQ=255) ggTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCt < 2:349258/139‑1 (MQ=255) ggTACT‑GGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCt < 1:1068084/139‑1 (MQ=255) | ACCTGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCT > NC_000913/2185732‑2186002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |