Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,044,364	T→C	T105A (ACA→GCA)	etp ←	O‑antigen capsule forming protein‑tyrosine‑phosphatase, Etk‑P dephosphorylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,044,364	0	T	C	100.0%	304.9 / NA	81	T105A (ACA→GCA)	etp	O‑antigen capsule forming protein‑tyrosine‑phosphatase, Etk‑P dephosphorylase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (39/42);  total (39/42)

AATTACCGGCTGAGGCGCTTCGCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑TCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCAT  >  NC_000913/1044228‑1044498                                                                                                                                          |                                                                                                                                       aaTTACCGGCTGAGGCGCTTCGCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACACCATTG‑CCt                                                                                                                                      >  1:1088511/1‑139 (MQ=255)  aTTACCGGCTGAGGCGCTTCGCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCtt                                                                                                                                     >  1:829394/1‑139 (MQ=255)        ggCTGAGGCGCTTCGCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCcgcg                                                                                                                               <  1:1179059/139‑1 (MQ=255)          cTGAGGCGCTTCGCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGa                                                                                                                             >  1:1410043/1‑139 (MQ=255)           tGAGGCGCTTCGCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGAc                                                                                                                            <  2:829394/139‑1 (MQ=255)                    tCGCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGc                                                                                                                   >  2:1488132/1‑139 (MQ=255)                      gCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCaa                                                                                                                 <  1:1003691/139‑1 (MQ=255)                      gCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCaa                                                                                                                 <  2:202678/139‑1 (MQ=255)                      gCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCaa                                                                                                                 <  2:662907/139‑1 (MQ=255)                               tGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTaa                                                                                                        >  2:121520/1‑139 (MQ=255)                                gACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAAc                                                                                                       <  2:1410043/139‑1 (MQ=255)                                gACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAAc                                                                                                       <  2:1252564/139‑1 (MQ=255)                                gACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAAc                                                                                                       <  1:631082/139‑1 (MQ=255)                                    ggCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCAATG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGa                                                                                                   <  2:1088511/139‑1 (MQ=255)                                     gcgcgcTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGt                                                                                                          >  2:6581/1‑131 (MQ=255)                                     gcgcgcTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGt                                                                                                          <  1:6581/131‑1 (MQ=255)                                      cgcgcTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGTATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGc                                                                                                 >  2:41376/1‑139 (MQ=255)                                      cgcgcTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGa                                                                                                   >  2:682603/1‑137 (MQ=255)                                      cgcgcTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGa                                                                                                   <  1:682603/137‑1 (MQ=255)                                      cgcgcTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGc                                                                                                 >  2:556590/1‑139 (MQ=255)                                          cTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAata                                                                                             >  1:1071314/1‑139 (MQ=255)                                           tCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAAc                                                                                                       >  2:638340/1‑128 (MQ=255)                                           tCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAAc                                                                                                       <  1:638340/128‑1 (MQ=255)                                                     cGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTc                                                                                  >  1:281697/1‑139 (MQ=255)                                                       tAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTGCCGACTCCa                                                                                >  1:1223399/1‑139 (MQ=255)                                                           cATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTTCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGc                                                                            <  2:711897/139‑1 (MQ=255)                                                           cATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGc                                                                            <  1:1488132/139‑1 (MQ=255)                                                              gTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTccc                                                                                                                                  <  1:1736335/82‑1 (MQ=255)                                                              gTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTccc                                                                                                                                  >  2:1736335/1‑82 (MQ=255)                                                              gTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCcgcg                                                                                                                               <  2:257182/85‑1 (MQ=255)                                                              gTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCcgcg                                                                                                                               >  1:257182/1‑85 (MQ=255)                                                                 cAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAAt                                                                      <  1:556590/139‑1 (MQ=255)                                                                   aaTGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCa                                                                    <  2:466587/139‑1 (MQ=255)                                                                        gTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCg                                                               >  1:1556197/1‑139 (MQ=255)                                                                                ttttACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGTGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCg                                                       >  1:663061/1‑139 (MQ=255)                                                                                 tttACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGt                                                      <  2:247507/139‑1 (MQ=255)                                                                                   tACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGc                                                    <  1:121520/139‑1 (MQ=255)                                                                                   tACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGc                                                    <  2:1036881/139‑1 (MQ=255)                                                                                          gggATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAAt                                                                      >  2:1327488/1‑114 (MQ=255)                                                                                          gggATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAAt                                                                      <  1:1327488/114‑1 (MQ=255)                                                                                               ccGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGt                                        >  2:1620791/1‑139 (MQ=255)                                                                                                cGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTg                                       >  1:996890/1‑139 (MQ=255)                                                                                                cGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTg                                       >  2:1060236/1‑139 (MQ=255)                                                                                                     tctcTTTCTGTTCCAGCCATTGCCCTAACAGTATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCtt                                  <  1:41376/139‑1 (MQ=255)                                                                                                      ctctTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCcgcg                                                                                                                               >  2:172199/1‑45 (MQ=255)                                                                                                      ctctTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCcgcg                                                                                                                               <  1:172199/45‑1 (MQ=255)                                                                                                      ctctTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCa                                                                                <  2:927638/92‑1 (MQ=255)                                                                                                      ctctTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCa                                                                                >  1:927638/1‑92 (MQ=255)                                                                                                         tttCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGt                              >  1:1223244/1‑139 (MQ=255)                                                                                                           tCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCaa                                                                                                                 <  1:203832/54‑1 (MQ=255)                                                                                                           tCTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCaa                                                                                                                 >  2:203832/1‑54 (MQ=255)                                                                                                            cTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTcc                                                                                 >  1:171777/1‑85 (MQ=255)                                                                                                            cTGTTCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTcc                                                                                 <  2:171777/85‑1 (MQ=255)                                                                                                               ttCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGt                                        <  2:1186533/123‑1 (MQ=255)                                                                                                               ttCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGt                                        >  1:1186533/1‑123 (MQ=255)                                                                                                               ttCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCa                        <  2:1223244/139‑1 (MQ=255)                                                                                                               ttCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCa                        <  1:1688201/139‑1 (MQ=255)                                                                                                               ttCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCa                        <  1:1060236/139‑1 (MQ=255)                                                                                                               ttCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCa                        <  2:1007168/139‑1 (MQ=255)                                                                                                               ttCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCa                        >  1:1139440/1‑139 (MQ=255)                                                                                                                tCCAGCCATTGCCCAAACAGCATTGCCCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTgg                                                    >  1:871500/1‑110 (MQ=255)                                                                                                                tCCAGCCATTGCCCAAACAGCATTGCCCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTgg                                                    <  2:871500/111‑2 (MQ=255)                                                                                                                tCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCAt                       >  1:140890/1‑139 (MQ=255)                                                                                                                tCCAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCAt                       >  2:586469/1‑139 (MQ=255)                                                                                                                 ccAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAAt                                                                      <  1:859308/91‑1 (MQ=255)                                                                                                                 ccAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAAt                                                                      >  2:859308/1‑91 (MQ=255)                                                                                                                 ccAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATg                      <  1:687950/139‑1 (MQ=255)                                                                                                                 ccAGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATg                      <  2:1121185/139‑1 (MQ=255)                                                                                                                   aGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCAtct                                               <  1:614044/112‑1 (MQ=255)                                                                                                                   aGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCAtct                                               >  2:614044/1‑112 (MQ=255)                                                                                                                   aGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCAtc                                                <  2:1047846/111‑1 (MQ=255)                                                                                                                   aGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCAtc                                                >  1:1047846/1‑111 (MQ=255)                                                                                                                   aGCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTc                    >  2:1574726/1‑139 (MQ=255)                                                                                                                    gCCATTGCCCAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTcc                   >  1:767527/1‑139 (MQ=255)                                                                                                                            ccAAACAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCAGTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAagag           <  2:1223399/139‑1 (MQ=255)                                                                                                                               aaCAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCt                                                                                                     <  2:533805/46‑1 (MQ=255)                                                                                                                               aaCAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCt                                                                                                     >  1:533805/1‑46 (MQ=255)                                                                                                                               aaCAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATa        >  2:1207986/1‑139 (MQ=255)                                                                                                                                 cAGCATTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACg      <  2:663061/139‑1 (MQ=255)                                                                                                                                     aTTG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCAt  >  2:1771109/1‑139 (MQ=255)                                                                                                                                      ttG‑CCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTAAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTaaa                                                           <  2:1097776/81‑2 (MQ=255)                                                                                                                                          |                                                                                                                                       AATTACCGGCTGAGGCGCTTCGCCCATTCCTGACTGGCGCGCTCCAACATACCGTAGACATGTTCAAATGCGTCCTGACTTTTACGATAGGGATCCGGGATCTCTTTCTGTTCCAGCCATTGCCCAAACAGCATTG‑TCTTCCCGCGGACCTCGGGAGCAATTGCGGTAACCTGAGCAATATGTTCCGACTCCATTGCCAGAATCAGATCGTAATTTCGTGCCATCTCAGCAGTGAGCTTACGTCCGGCATGTCCTTCAAGAGATACGCCAT  >  NC_000913/1044228‑1044498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑