Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913566,1730CG42.3% 79.1 / 170.6 111pseudogene (204/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base C (31/33);  new base G (25/22);  total (56/55)
Fisher's exact test for biased strand distribution p-value = 7.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 111 total aligned reads displayed.

CGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCAC  >  NC_000913/566041‑566307
                                                                                                                                     |                                                                                                                                       
cgccgcAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCg                                                                                                                                   >  2:1043569/1‑139 (MQ=255)
  ccgcAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTc                                                                                                                                 >  1:900455/1‑139 (MQ=255)
             gCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                       >  1:931622/1‑139 (MQ=255)
                  ccGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                       <  1:1081978/133‑1 (MQ=255)
                  ccGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                       >  2:1081978/1‑133 (MQ=255)
                  ccGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTAc                                                                                                                >  1:36721/1‑139 (MQ=255)
                        ttgcgcctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCa                                                                                                          >  1:1066239/8‑139 (MQ=255)
                            gcctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCAtccc                                                                                                      >  1:507296/4‑136 (MQ=255)
                             ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCg                                                                                                     <  2:1199378/139‑1 (MQ=255)
                                 cccGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCa                                                                                                 >  1:25041/1‑139 (MQ=255)
                                   cGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAAt                                                                                               <  2:513330/139‑1 (MQ=255)
                                   cGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAAt                                                                                               <  2:1099135/139‑1 (MQ=255)
                                    ggATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACt                                                                                                               >  2:271466/1‑122 (MQ=255)
                                     gATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCa                                                                                             <  1:959593/139‑1 (MQ=255)
                                         ttatCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGAc                                                                                         >  1:1013941/1‑139 (MQ=255)
                                           atCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACAt                                                                                       >  2:759558/1‑139 (MQ=255)
                                            tCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATa                                                                                      >  2:808829/1‑139 (MQ=255)
                                               tGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCGGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATg                                                                                   <  1:1199039/139‑1 (MQ=255)
                                                gAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACa                                                                                        >  1:337428/1‑133 (MQ=255)
                                                gAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACa                                                                                        <  2:337428/133‑1 (MQ=255)
                                                gAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGc                                                                                  >  1:434142/1‑139 (MQ=255)
                                                gAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTAGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACAGAATGc                                                                                  >  1:769750/1‑139 (MQ=255)
                                                 aGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCa                                                                                 >  2:447358/1‑139 (MQ=255)
                                                 aGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCa                                                                                 <  1:808829/139‑1 (MQ=255)
                                                 aGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCa                                                                                 >  2:254751/1‑139 (MQ=255)
                                                    aTGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                       >  2:617184/1‑99 (MQ=255)
                                                    aTGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                       <  1:617184/99‑1 (MQ=255)
                                                      gCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGt                                                                                                                  <  1:820349/101‑1 (MQ=255)
                                                      gCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCt                                                                            >  2:496996/1‑139 (MQ=255)
                                                       cGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACg                                                                                           <  2:1219274/123‑1 (MQ=255)
                                                       cGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACg                                                                                           >  1:1219274/1‑123 (MQ=255)
                                                       cGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCtt                                                                           >  1:408384/1‑139 (MQ=255)
                                                         tCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTTTGCCAGAGCCTCGCCCAGTCTTTCGATGAACTCCGGCACGATCTCGTCAGCAGCGGCCAATGT‑CTTTACATGCCGCGAAGTCACGCCATAATGCAGGCGTTcc                                                                         <  2:427662/139‑2 (MQ=255)
                                                         tCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACa                                                                                        <  2:369864/124‑1 (MQ=255)
                                                         tCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACa                                                                                        >  1:369864/1‑124 (MQ=255)
                                                         tCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                         <  1:154472/139‑1 (MQ=255)
                                                         tCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                         <  2:434142/139‑1 (MQ=255)
                                                         tCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                         <  1:759558/139‑1 (MQ=255)
                                                          cATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCAc                                                                        <  2:36721/139‑1 (MQ=255)
                                                          cATCGCCATTGCA‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTAAATAACGACATAATGCATGCCTTCAc                                                                        >  2:1151461/1‑139 (MQ=255)
                                                             cGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCt                                                                     <  2:881597/139‑1 (MQ=255)
                                                               ccATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTc                                                                   <  1:1185620/139‑1 (MQ=255)
                                                                 aTTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAt                                                                 <  1:1149273/139‑1 (MQ=255)
                                                                   tGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACa                                                                                        <  2:152791/114‑1 (MQ=255)
                                                                   tGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACa                                                                                        >  1:152791/1‑114 (MQ=255)
                                                                   tGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATgc                                                               >  1:32748/1‑139 (MQ=255)
                                                                        ccccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCgg                                                           >  1:677251/1‑139 (MQ=255)
                                                                        ccccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAt                                                                                                                                       <  1:153245/64‑1 (MQ=255)
                                                                          ccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGc                                                                                  <  1:1002590/114‑1 (MQ=255)
                                                                          ccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGc                                                                                  >  2:1002590/1‑114 (MQ=255)
                                                                           cAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAt                                                                                                                                       <  1:611706/61‑1 (MQ=255)
                                                                             aaTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCAt                                                      <  2:541604/139‑1 (MQ=255)
                                                                             aaTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCAt                                                      <  2:507296/139‑1 (MQ=255)
                                                                              aTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGt                                                                                                                                  <  2:405093/63‑1 (MQ=255)
                                                                              aTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGt                                                                                                                                  >  1:405093/1‑63 (MQ=255)
                                                                                aCAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGt                                                   <  2:769750/139‑1 (MQ=255)
                                                                                  aaaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTg                                                 >  1:799207/1‑139 (MQ=255)
                                                                                   aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                       >  1:125842/1‑69 (MQ=255)
                                                                                   aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                       <  2:125842/69‑1 (MQ=255)
                                                                                   aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCggg                                                          <  2:1151710/129‑1 (MQ=255)
                                                                                   aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCggg                                                          >  1:1151710/1‑129 (MQ=255)
                                                                                   aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCTCC‑ATGTACTTTTCATTCCGCTCAATCa                                                                                             <  2:738336/94‑1 (MQ=255)
                                                                                   aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAACCa                                                                                             >  1:738336/1‑94 (MQ=255)
                                                                                     aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                       >  2:1119360/1‑67 (MQ=255)
                                                                                     aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                       <  1:1119360/67‑1 (MQ=255)
                                                                                     aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGt                                                                                                                  <  2:861175/71‑1 (MQ=255)
                                                                                     aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGt                                                                                                                  >  1:861175/1‑71 (MQ=255)
                                                                                     aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                              <  1:254751/139‑1 (MQ=255)
                                                                                     aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                              <  2:32748/139‑1 (MQ=255)
                                                                                         aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGt                                                                                                                  >  2:664539/1‑67 (MQ=255)
                                                                                         aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGt                                                                                                                  <  1:664539/67‑1 (MQ=255)
                                                                                         aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGt                                          >  2:963424/1‑139 (MQ=255)
                                                                                          tttCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCtt                                                                           <  1:948617/105‑1 (MQ=255)
                                                                                          tttCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCtt                                                                           >  2:948617/1‑105 (MQ=255)
                                                                                            tCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTAcc                                       <  2:1013941/139‑1 (MQ=255)
                                                                                              aGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAACGTACCAg                                     >  2:437702/1‑139 (MQ=255)
                                                                                                ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCg                                                                                                                         >  1:993408/1‑54 (MQ=255)
                                                                                                ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGc                                   >  1:19326/1‑139 (MQ=255)
                                                                                                ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                       <  1:1114995/56‑1 (MQ=255)
                                                                                                ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                       >  2:1114995/1‑56 (MQ=255)
                                                                                                    tGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                       >  1:626524/1‑52 (MQ=255)
                                                                                                    tGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                       <  2:626524/52‑1 (MQ=255)
                                                                                                    tGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGc                                                                                                                        <  2:178951/51‑1 (MQ=255)
                                                                                                    tGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGc                                                                                                                        >  1:178951/1‑51 (MQ=255)
                                                                                                    tGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCAttt                               >  2:835964/1‑137 (MQ=255)
                                                                                                          gTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTcgc                         >  2:948758/1‑139 (MQ=255)
                                                                                                               ttttttCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGt                                                                                                                  <  2:786350/45‑1 (MQ=255)
                                                                                                               ttttttCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGt                                                                                                                  >  1:786350/1‑45 (MQ=255)
                                                                                                               ttttttCGATGAACTACGGCACGATCTCGTCAAAACTCGCC‑ATGTAATTTTCGTCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCAc                    >  1:274392/1‑139 (MQ=255)
                                                                                                                 ttttCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc                  <  1:849756/139‑1 (MQ=255)
                                                                                                                    tCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACTACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCcaca               <  2:887337/139‑1 (MQ=255)
                                                                                                                    tCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCcaca               >  2:945549/1‑139 (MQ=255)
                                                                                                                     cGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                              >  1:673755/1‑107 (MQ=255)
                                                                                                                     cGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                              <  2:673755/107‑1 (MQ=255)
                                                                                                                      gATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGTCATTTTTTCGCGTCACCCACTTg             <  2:357222/139‑1 (MQ=255)
                                                                                                                       aTGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGc            <  1:406494/139‑1 (MQ=255)
                                                                                                                       aTGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGc            <  2:931622/139‑1 (MQ=255)
                                                                                                                               cGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACa                                                                                        <  1:508419/55‑1 (MQ=255)
                                                                                                                               cGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACa                                                                                        >  2:508419/1‑55 (MQ=255)
                                                                                                                                 gCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCAc  <  1:496996/139‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                       
CGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCAC  >  NC_000913/566041‑566307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑